Wall clock time and date at job start Mon Mar 30 2020 06:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99807 * 2 1 4 4 C 1.52998 * 109.46775 * 174.87943 * 3 2 1 5 5 N 1.46898 * 109.46982 * 70.99190 * 4 3 2 6 6 C 1.46898 * 110.99913 * 292.38521 * 5 4 3 7 7 C 1.50703 * 109.47310 * 297.67140 * 6 5 4 8 8 H 1.08007 * 119.99776 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00394 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00205 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99953 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47209 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47112 * 120.00005 * 11 9 7 14 14 H 1.48505 * 109.46703 * 239.99856 * 11 9 7 15 15 C 1.46901 * 111.00589 * 56.33827 * 5 4 3 16 16 H 1.08999 * 109.47003 * 292.40881 * 15 5 4 17 17 C 1.53004 * 109.46751 * 52.40421 * 15 5 4 18 18 C 1.52999 * 109.46724 * 180.02562 * 17 15 5 19 19 C 1.52996 * 109.47792 * 300.00182 * 18 17 15 20 20 C 1.53003 * 109.46936 * 59.99733 * 19 18 17 21 21 H 1.09001 * 109.47411 * 180.02562 * 20 19 18 22 22 O 1.42905 * 109.46980 * 60.00564 * 20 19 18 23 23 C 1.42897 * 114.00258 * 89.99593 * 22 20 19 24 24 C 1.52994 * 109.47378 * 172.40861 * 15 5 4 25 25 H 1.08999 * 109.47495 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47686 * 299.99864 * 1 2 3 27 27 H 1.09001 * 109.47499 * 59.99637 * 1 2 3 28 28 H 1.09000 * 109.47212 * 294.88162 * 3 2 1 29 29 H 1.09000 * 109.46932 * 54.88218 * 3 2 1 30 30 H 1.09006 * 109.46893 * 190.98149 * 4 3 2 31 31 H 1.08997 * 109.47467 * 310.98882 * 4 3 2 32 32 H 1.09004 * 109.47391 * 57.66790 * 6 5 4 33 33 H 1.09001 * 109.47345 * 177.67224 * 6 5 4 34 34 H 0.96998 * 120.00428 * 180.02562 * 10 9 7 35 35 H 1.08992 * 109.47193 * 300.00244 * 17 15 5 36 36 H 1.08999 * 109.46991 * 60.00454 * 17 15 5 37 37 H 1.08999 * 109.47109 * 60.00411 * 18 17 15 38 38 H 1.09006 * 109.46940 * 180.02562 * 18 17 15 39 39 H 1.08993 * 109.47626 * 179.97438 * 19 18 17 40 40 H 1.08999 * 109.46981 * 300.00308 * 19 18 17 41 41 H 1.09005 * 109.47296 * 300.00555 * 23 22 20 42 42 H 1.09000 * 109.46582 * 60.00060 * 23 22 20 43 43 H 1.09000 * 109.47263 * 180.02562 * 23 22 20 44 44 H 1.08999 * 109.47071 * 299.99979 * 24 15 5 45 45 H 1.08997 * 109.47131 * 60.00052 * 24 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5301 1.1869 0.1287 5 7 4.0871 0.6520 -1.1209 6 6 3.6766 -0.7435 -1.3253 7 6 4.2183 -1.5956 -0.2066 8 1 4.8090 -1.1455 0.5777 9 6 3.9600 -2.9497 -0.1842 10 7 3.2404 -3.4978 -1.1388 11 14 4.6310 -4.0057 1.2030 12 1 5.4026 -3.1548 2.1442 13 1 3.5040 -4.6480 1.9258 14 1 5.5205 -5.0539 0.6413 15 6 3.7046 1.4867 -2.2677 16 1 2.6306 1.4047 -2.4345 17 6 4.0661 2.9453 -1.9799 18 6 3.6671 3.8146 -3.1740 19 6 4.4142 3.3407 -4.4223 20 6 4.0527 1.8821 -4.7099 21 1 4.5853 1.5443 -5.5990 22 8 2.6445 1.7745 -4.9281 23 6 2.2536 1.9373 -6.2929 24 6 4.4521 1.0125 -3.5155 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.7629 1.8132 -0.9323 29 1 1.6178 1.8778 0.8406 30 1 3.9560 2.1711 0.3243 31 1 3.7738 0.5154 0.9520 32 1 2.5883 -0.8046 -1.3342 33 1 4.0683 -1.1018 -2.2773 34 1 3.0584 -4.4504 -1.1229 35 1 3.5335 3.2830 -1.0910 36 1 5.1401 3.0272 -1.8131 37 1 2.5930 3.7325 -3.3404 38 1 3.9251 4.8537 -2.9693 39 1 4.1296 3.9597 -5.2730 40 1 5.4883 3.4228 -4.2559 41 1 2.5590 2.9234 -6.6431 42 1 2.7330 1.1710 -6.9020 43 1 1.1708 1.8423 -6.3745 44 1 5.5262 1.0945 -3.3487 45 1 4.1946 -0.0266 -3.7204 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070329066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:26 Heat of formation + Delta-G solvation = -109.872899 kcal Electronic energy + Delta-G solvation = -23141.199394 eV Core-core repulsion = 19965.108310 eV Total energy + Delta-G solvation = -3176.091083 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83666 -39.21857 -37.66083 -35.85018 -34.39903 -31.82780 -30.56038 -30.12994 -27.77856 -27.35130 -26.83714 -24.56733 -23.68861 -22.94016 -21.22050 -20.14644 -18.44448 -17.59453 -17.40038 -16.91187 -16.67061 -16.57510 -16.22275 -15.75106 -15.56178 -15.28179 -14.91314 -14.45455 -14.14549 -13.76658 -13.43694 -13.37645 -13.21544 -13.11491 -12.88502 -12.80446 -12.55763 -12.50607 -12.38149 -12.15503 -12.06093 -11.91529 -11.71311 -11.48055 -11.22161 -10.97179 -10.82480 -10.56017 -10.31161 -10.23159 -8.69908 -8.03636 -6.07894 1.41640 1.42085 1.54798 2.48574 2.95543 3.04936 3.30151 3.42563 3.82387 3.93411 4.11510 4.22991 4.30402 4.34065 4.37535 4.45795 4.47633 4.51639 4.54323 4.57882 4.62950 4.64106 4.72935 4.78221 4.82314 4.83850 4.85770 5.04334 5.11823 5.18086 5.25622 5.30834 5.35520 5.42073 5.55017 5.60339 5.75029 5.85893 6.27374 6.38783 6.48433 6.55291 6.88777 7.08661 7.57148 9.08050 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.018591 B = 0.006030 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.704720 B = 4642.646837 C = 4966.027085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.390 6.390 3 C 0.027 3.973 4 C 0.061 3.939 5 N -0.539 5.539 6 C 0.204 3.796 7 C -0.496 4.496 8 H 0.053 0.947 9 C 0.001 3.999 10 N -0.936 5.936 11 Si 0.957 3.043 12 H -0.265 1.265 13 H -0.284 1.284 14 H -0.282 1.282 15 C 0.094 3.906 16 H 0.016 0.984 17 C -0.108 4.108 18 C -0.105 4.105 19 C -0.132 4.132 20 C 0.092 3.908 21 H 0.069 0.931 22 O -0.407 6.407 23 C 0.026 3.974 24 C -0.107 4.107 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.004 0.996 33 H -0.011 1.011 34 H 0.256 0.744 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 16.648 -5.726 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.309 6.309 3 C -0.051 4.051 4 C -0.067 4.067 5 N -0.262 5.262 6 C 0.078 3.922 7 C -0.535 4.535 8 H 0.072 0.928 9 C -0.196 4.196 10 N -0.578 5.578 11 Si 0.784 3.216 12 H -0.189 1.189 13 H -0.210 1.210 14 H -0.208 1.208 15 C -0.015 4.015 16 H 0.034 0.966 17 C -0.145 4.145 18 C -0.143 4.143 19 C -0.170 4.170 20 C 0.034 3.966 21 H 0.087 0.913 22 O -0.327 6.327 23 C -0.070 4.070 24 C -0.144 4.144 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.022 0.978 33 H 0.007 0.993 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.014 16.292 -5.589 17.254 hybrid contribution -0.916 -1.150 0.194 1.483 sum -1.931 15.142 -5.395 16.190 Atomic orbital electron populations 1.22768 0.81910 1.02210 1.00089 1.88381 1.19603 1.28020 1.94941 1.23382 0.96600 0.85044 1.00055 1.22270 0.89924 1.00640 0.93905 1.62273 1.58803 1.03260 1.01849 1.19536 0.94407 0.83865 0.94421 1.21413 1.30581 0.92784 1.08682 0.92845 1.25731 0.96029 0.99391 0.98433 1.70121 1.41176 1.11511 1.34950 0.85516 0.77915 0.78645 0.79564 1.18926 1.21025 1.20809 1.21435 0.95947 0.93712 0.90378 0.96569 1.21647 1.01934 0.92319 0.98630 1.21368 1.00033 0.99135 0.93767 1.21987 1.01384 0.94700 0.98884 1.22191 0.81566 0.95922 0.96887 0.91318 1.87958 1.23789 1.93395 1.27545 1.22913 1.01361 1.00557 0.82203 1.21659 1.00541 0.97984 0.94258 0.91038 0.92518 0.94317 0.93685 0.91898 0.87750 0.91876 0.97809 0.99317 0.93492 0.91560 0.91014 0.92864 0.89816 0.90317 0.89815 0.92337 0.94030 0.89403 0.90117 0.94951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 11.01 113.37 1.25 2.19 16 2 O -0.39 -17.63 7.72 -148.98 -1.15 -18.78 16 3 C 0.03 1.00 5.45 71.98 0.39 1.39 16 4 C 0.06 2.39 5.12 86.30 0.44 2.83 16 5 N -0.54 -23.96 4.60 -875.52 -4.03 -27.99 16 6 C 0.20 11.37 4.09 85.56 0.35 11.72 16 7 C -0.50 -29.44 8.38 25.60 0.21 -29.22 16 8 H 0.05 3.13 6.89 -2.91 -0.02 3.11 16 9 C 0.00 0.04 5.46 84.65 0.46 0.50 16 10 N -0.94 -59.40 13.29 21.45 0.28 -59.11 16 11 Si 0.96 46.98 29.54 68.60 2.03 49.01 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 14 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 15 C 0.09 3.50 1.15 44.91 0.05 3.55 16 16 H 0.02 0.70 5.99 -2.39 -0.01 0.69 16 17 C -0.11 -2.98 4.59 30.60 0.14 -2.84 16 18 C -0.11 -2.37 5.78 30.59 0.18 -2.20 16 19 C -0.13 -2.81 5.63 30.59 0.17 -2.64 16 20 C 0.09 2.58 2.92 30.61 0.09 2.67 16 21 H 0.07 1.71 7.79 -2.39 -0.02 1.69 16 22 O -0.41 -12.54 9.00 -148.98 -1.34 -13.88 16 23 C 0.03 0.56 10.82 113.37 1.23 1.79 16 24 C -0.11 -3.87 4.83 30.61 0.15 -3.73 16 25 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.64 5.67 -2.39 -0.01 1.62 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.10 3.28 6.43 -2.38 -0.02 3.26 16 31 H 0.06 2.82 6.42 -2.39 -0.02 2.81 16 32 H 0.00 0.27 5.31 -2.38 -0.01 0.26 16 33 H -0.01 -0.69 6.11 -2.39 -0.01 -0.70 16 34 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.07 1.73 5.99 -2.39 -0.01 1.72 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.34 7.68 -2.39 -0.02 1.33 16 38 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.08 1.36 7.87 -2.39 -0.02 1.35 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 0.99 7.87 -2.38 -0.02 0.97 16 42 H 0.04 0.86 8.09 -2.39 -0.02 0.84 16 43 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.03 1.43 6.36 -2.39 -0.02 1.42 16 Total: -1.00 -72.43 336.74 1.85 -70.57 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.95 Total: 14.17 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 5.11 Total: -13.99 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -3.74 Total: -87.10 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -2.49 Total: -32.66 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -72.43 1.85 -70.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070329066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.301 kcal (2) G-P(sol) polarization free energy of solvation -72.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds