Wall clock time and date at job start Mon Mar 30 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00282 * 2 1 4 4 H 1.48508 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46979 * 299.99605 * 3 2 1 6 6 H 1.48501 * 109.47331 * 59.99746 * 3 2 1 7 7 C 1.37881 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99899 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00098 * 359.97438 * 7 2 1 10 10 O 1.42094 * 106.40024 * 71.33355 * 9 7 2 11 11 O 1.42098 * 106.39903 * 298.41540 * 9 7 2 12 12 N 1.65599 * 107.21904 * 184.87393 * 9 7 2 13 13 C 1.39748 * 119.99920 * 64.21091 * 12 9 7 14 14 C 1.39037 * 120.42170 * 255.15990 * 13 12 9 15 15 N 1.31861 * 120.98616 * 180.02562 * 14 13 12 16 16 C 1.31679 * 121.96456 * 359.97438 * 15 14 13 17 17 C 1.39584 * 120.73118 * 359.97438 * 16 15 14 18 18 C 1.47734 * 120.52795 * 179.97438 * 17 16 15 19 19 O 1.21470 * 120.00119 * 180.02562 * 18 17 16 20 20 O 1.34706 * 120.00209 * 0.02586 * 18 17 16 21 21 C 1.39007 * 120.42304 * 75.18566 * 13 12 9 22 22 H 0.96997 * 119.99476 * 0.02562 * 1 2 3 23 23 H 0.97002 * 119.99877 * 244.21190 * 12 9 7 24 24 H 1.08005 * 119.50679 * 0.02562 * 14 13 12 25 25 H 1.08000 * 119.63199 * 180.02562 * 16 15 14 26 26 H 0.96701 * 117.00064 * 180.02562 * 20 18 17 27 27 H 1.07995 * 120.89139 * 0.24386 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1235 -2.7201 -0.0005 10 8 0.5445 -2.8491 -1.2918 11 8 0.3616 -2.7434 1.1987 12 7 2.2433 -3.9327 0.1332 13 6 3.0220 -4.0404 1.2886 14 6 4.3571 -3.6526 1.2764 15 7 5.1022 -3.7499 2.3600 16 6 4.6237 -4.2138 3.4956 17 6 3.2932 -4.6240 3.5945 18 6 2.7611 -5.1443 4.8708 19 8 1.6018 -5.4990 4.9460 20 8 3.5616 -5.2253 5.9511 21 6 2.4717 -4.5370 2.4645 22 1 -0.4849 0.8401 -0.0004 23 1 2.3587 -4.5682 -0.5905 24 1 4.7905 -3.2660 0.3658 25 1 5.2677 -4.2768 4.3604 26 1 3.1687 -5.5725 6.7636 27 1 1.4390 -4.8504 2.5043 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083916296.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:53 Heat of formation + Delta-G solvation = -175.827184 kcal Electronic energy + Delta-G solvation = -18558.739770 eV Core-core repulsion = 15213.783277 eV Total energy + Delta-G solvation = -3344.956494 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.84114 -40.56879 -37.53654 -37.15351 -36.51686 -36.24833 -35.19488 -33.54882 -30.64582 -28.30859 -26.40830 -24.45542 -22.67110 -21.19468 -19.86476 -19.19911 -18.91577 -18.35614 -17.97358 -17.53225 -17.12196 -16.75256 -16.66236 -15.93495 -15.62142 -14.80215 -14.52934 -14.30488 -14.05056 -13.73972 -13.38695 -13.05043 -12.96500 -12.64203 -12.61207 -12.52198 -12.28023 -12.05263 -11.73081 -11.28539 -11.08657 -10.91671 -10.49888 -10.07242 -8.79104 -7.52675 -0.65871 -0.19297 0.31404 1.33639 1.35090 1.40130 1.52816 1.88351 2.18653 2.55730 2.60901 2.74413 3.35624 3.55823 3.65210 3.70192 3.81132 4.07578 4.33475 4.48158 4.79842 4.86091 4.96122 5.24185 5.42185 5.50717 5.86631 6.17241 6.66624 6.75343 6.92297 8.17995 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.021637 B = 0.006503 C = 0.006119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.784449 B = 4304.676138 C = 4574.515055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.990 3.010 4 H -0.242 1.242 5 H -0.259 1.259 6 H -0.263 1.263 7 C -1.033 5.033 8 H 0.127 0.873 9 S 2.708 3.292 10 O -1.034 7.034 11 O -1.030 7.030 12 N -1.061 6.061 13 C 0.079 3.921 14 C 0.147 3.853 15 N -0.486 5.486 16 C 0.172 3.828 17 C -0.185 4.185 18 C 0.545 3.455 19 O -0.546 6.546 20 O -0.490 6.490 21 C -0.023 4.023 22 H 0.299 0.701 23 H 0.430 0.570 24 H 0.192 0.808 25 H 0.211 0.789 26 H 0.438 0.562 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.643 -7.056 7.731 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.142 4.142 3 Si 0.808 3.192 4 H -0.165 1.165 5 H -0.183 1.183 6 H -0.188 1.188 7 C -1.167 5.167 8 H 0.145 0.855 9 S 2.810 3.190 10 O -1.024 7.024 11 O -1.019 7.019 12 N -0.817 5.817 13 C -0.019 4.019 14 C -0.012 4.012 15 N -0.194 5.194 16 C 0.013 3.987 17 C -0.189 4.189 18 C 0.389 3.611 19 O -0.438 6.438 20 O -0.304 6.304 21 C -0.051 4.051 22 H 0.109 0.891 23 H 0.269 0.731 24 H 0.209 0.791 25 H 0.228 0.772 26 H 0.301 0.699 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.192 -6.727 7.388 15.763 hybrid contribution -1.121 0.188 0.059 1.138 sum 11.071 -6.540 7.447 14.859 Atomic orbital electron populations 1.69999 1.08812 1.32373 1.41146 1.26006 0.95347 1.05356 0.87483 0.85098 0.79831 0.75038 0.79245 1.16456 1.18344 1.18769 1.30798 1.07397 1.11623 1.66880 0.85469 1.00494 0.72653 0.74056 0.71760 1.93343 1.77400 1.87998 1.43653 1.93339 1.70513 1.87898 1.50194 1.53095 1.56761 1.47758 1.24046 1.18240 0.93010 1.03267 0.87365 1.23856 0.89060 0.90032 0.98217 1.67959 1.37379 1.14793 0.99304 1.23771 0.91076 0.87280 0.96525 1.20085 0.97109 1.09680 0.92013 1.20396 0.82745 0.73695 0.84277 1.90924 1.20029 1.47445 1.85420 1.84460 1.45244 1.78445 1.22286 1.22233 1.00503 0.90590 0.91793 0.89065 0.73090 0.79079 0.77199 0.69908 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.23 13.10 21.45 0.28 -51.95 15 2 C 0.07 3.86 5.46 84.66 0.46 4.32 15 3 Si 0.99 40.04 29.54 68.60 2.03 42.07 15 4 H -0.24 -8.96 7.11 99.48 0.71 -8.25 15 5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 7 C -1.03 -54.29 9.66 67.74 0.65 -53.64 15 8 H 0.13 5.86 7.81 -2.91 -0.02 5.83 15 9 S 2.71 140.67 5.02 -56.49 -0.28 140.38 15 10 O -1.03 -59.52 18.02 -128.00 -2.31 -61.82 15 11 O -1.03 -60.50 17.04 -128.00 -2.18 -62.68 15 12 N -1.06 -39.59 5.72 -51.19 -0.29 -39.88 15 13 C 0.08 2.68 5.82 38.26 0.22 2.90 15 14 C 0.15 4.19 11.11 84.88 0.94 5.13 15 15 N -0.49 -12.72 10.34 -194.21 -2.01 -14.73 15 16 C 0.17 3.98 10.78 85.04 0.92 4.89 15 17 C -0.18 -5.24 5.89 -20.02 -0.12 -5.36 15 18 C 0.54 14.25 8.28 70.33 0.58 14.84 15 19 O -0.55 -18.69 17.20 19.93 0.34 -18.35 15 20 O -0.49 -7.54 12.70 -56.16 -0.71 -8.25 15 21 C -0.02 -0.80 8.98 22.88 0.21 -0.59 15 22 H 0.30 15.73 8.31 -92.71 -0.77 14.96 15 23 H 0.43 12.92 8.95 -96.74 -0.87 12.05 15 24 H 0.19 4.46 8.06 -2.91 -0.02 4.44 15 25 H 0.21 3.12 7.62 -2.91 -0.02 3.10 15 26 H 0.44 2.64 9.11 -74.06 -0.67 1.97 15 27 H 0.13 5.29 7.69 -2.91 -0.02 5.27 15 Total: -1.00 -80.56 273.53 -1.55 -82.10 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -0.28 Total: 20.62 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 3.87 Total: -27.50 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -2.02 Total: -106.56 kcal Atomic # 8 Polarization: -146.25 SS G_CDS: -4.86 Total: -151.11 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Atomic # 16 Polarization: 140.67 SS G_CDS: -0.28 Total: 140.38 kcal Total: -80.56 -1.55 -82.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083916296.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.725 kcal (2) G-P(sol) polarization free energy of solvation -80.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds