Wall clock time and date at job start Mon Mar 30 2020 06:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99722 * 2 1 4 4 H 1.48495 * 109.46950 * 239.99859 * 3 2 1 5 5 H 1.48496 * 109.47007 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47004 * 120.00193 * 3 2 1 7 7 C 1.37875 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00057 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00110 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.39985 * 71.33570 * 9 7 2 11 11 O 1.42102 * 106.40181 * 298.41803 * 9 7 2 12 12 N 1.65598 * 107.21843 * 184.87517 * 9 7 2 13 13 C 1.39190 * 119.99822 * 64.20668 * 12 9 7 14 14 C 1.39413 * 120.83305 * 255.15532 * 13 12 9 15 15 C 1.38250 * 119.27276 * 180.02562 * 14 13 12 16 16 N 1.31628 * 120.99849 * 0.02562 * 15 14 13 17 17 C 1.32865 * 121.82713 * 359.65857 * 16 15 14 18 18 C 1.48087 * 119.69394 * 180.34160 * 17 16 15 19 19 O 1.21425 * 119.99736 * 180.29334 * 18 17 16 20 20 O 1.34674 * 120.00084 * 0.28842 * 18 17 16 21 21 C 1.39075 * 120.60968 * 0.62911 * 17 16 15 22 22 H 0.96993 * 120.00253 * 359.97438 * 1 2 3 23 23 H 0.96994 * 119.99722 * 244.20709 * 12 9 7 24 24 H 1.08004 * 120.36166 * 0.02562 * 14 13 12 25 25 H 1.08001 * 119.50292 * 180.02562 * 15 14 13 26 26 H 0.96700 * 116.99565 * 180.02562 * 20 18 17 27 27 H 1.08000 * 120.51835 * 179.68128 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.5447 -2.8491 -1.2918 11 8 0.3616 -2.7435 1.1987 12 7 2.2435 -3.9325 0.1332 13 6 3.0192 -4.0397 1.2840 14 6 4.3587 -3.6534 1.2813 15 6 5.0994 -3.7741 2.4424 16 7 4.5587 -4.2474 3.5453 17 6 3.2850 -4.6220 3.5963 18 6 2.7232 -5.1410 4.8644 19 8 1.5613 -5.4898 4.9159 20 8 3.5011 -5.2261 5.9605 21 6 2.4760 -4.5367 2.4683 22 1 -0.4850 0.8400 0.0004 23 1 2.3589 -4.5680 -0.5904 24 1 4.8128 -3.2641 0.3820 25 1 6.1373 -3.4756 2.4447 26 1 3.0900 -5.5715 6.7648 27 1 1.4422 -4.8464 2.5101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083916355.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:28 Heat of formation + Delta-G solvation = -140.715865 kcal Electronic energy + Delta-G solvation = -18561.312002 eV Core-core repulsion = 15217.878049 eV Total energy + Delta-G solvation = -3343.433953 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65889 -39.36492 -36.08055 -35.59502 -35.22504 -34.17446 -33.20592 -31.52191 -29.97912 -26.28103 -25.28899 -23.19132 -21.55647 -19.32578 -18.57793 -17.76920 -17.57609 -16.54397 -16.33710 -15.77051 -15.68983 -15.45008 -14.95710 -14.29204 -14.04618 -13.57824 -13.52118 -13.34637 -12.20721 -12.07071 -11.53493 -11.49189 -11.27762 -11.09701 -10.86284 -10.70633 -10.50471 -10.40204 -9.86758 -9.62619 -9.35292 -9.31958 -9.21684 -8.82261 -6.81972 -5.46654 0.57794 1.17568 2.04388 2.48290 2.88632 3.02205 3.07184 3.11660 3.84117 3.94095 4.25394 4.42898 4.53551 4.99326 5.02351 5.08093 5.44606 5.52104 5.61643 5.82833 6.18580 6.31223 6.40094 6.44704 6.64868 7.19962 7.54600 7.65904 7.80532 8.00713 8.76037 10.12734 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.021677 B = 0.006508 C = 0.006126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.397214 B = 4301.306959 C = 4569.923443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.134 3.866 3 Si 0.923 3.077 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.263 1.263 7 C -1.018 5.018 8 H 0.104 0.896 9 S 2.699 3.301 10 O -0.995 6.995 11 O -0.987 6.987 12 N -1.084 6.084 13 C 0.203 3.797 14 C -0.138 4.138 15 C 0.100 3.900 16 N -0.441 5.441 17 C 0.089 3.911 18 C 0.545 3.455 19 O -0.501 6.501 20 O -0.494 6.494 21 C -0.094 4.094 22 H 0.294 0.706 23 H 0.417 0.583 24 H 0.151 0.849 25 H 0.169 0.831 26 H 0.410 0.590 27 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.211 -6.921 4.878 13.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.085 4.085 3 Si 0.747 3.253 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.152 5.152 8 H 0.122 0.878 9 S 2.801 3.199 10 O -0.986 6.986 11 O -0.977 6.977 12 N -0.833 5.833 13 C 0.098 3.902 14 C -0.161 4.161 15 C -0.061 4.061 16 N -0.154 5.154 17 C -0.047 4.047 18 C 0.387 3.613 19 O -0.388 6.388 20 O -0.304 6.304 21 C -0.118 4.118 22 H 0.104 0.896 23 H 0.253 0.747 24 H 0.168 0.832 25 H 0.186 0.814 26 H 0.268 0.732 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.338 -6.915 5.348 12.791 hybrid contribution 0.210 0.892 -0.607 1.100 sum 9.548 -6.023 4.740 12.244 Atomic orbital electron populations 1.69878 1.06789 1.31125 1.39255 1.24747 0.94523 1.00869 0.88394 0.86151 0.79899 0.79432 0.79863 1.18716 1.19988 1.18741 1.30358 1.06006 1.11132 1.67694 0.87802 1.01138 0.72212 0.73367 0.73213 1.93407 1.75643 1.87199 1.42327 1.93403 1.68409 1.86994 1.48907 1.53965 1.57615 1.48920 1.22846 1.17316 0.90481 0.95135 0.87226 1.22887 0.94405 0.97760 1.01009 1.22685 1.00473 0.95833 0.87078 1.67610 1.10933 1.08174 1.28648 1.19686 0.90958 1.02869 0.91199 1.20442 0.83091 0.74359 0.83399 1.90931 1.17570 1.45507 1.84815 1.84677 1.46059 1.78375 1.21325 1.22599 1.02300 0.95277 0.91588 0.89600 0.74716 0.83165 0.81422 0.73213 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.08 13.10 55.43 0.73 -23.35 15 2 C 0.13 3.60 5.46 -17.82 -0.10 3.51 15 3 Si 0.92 19.90 29.54 -169.99 -5.02 14.88 15 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 15 5 H -0.28 -5.71 7.11 56.52 0.40 -5.30 15 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 7 C -1.02 -26.69 9.66 30.60 0.30 -26.39 15 8 H 0.10 2.43 7.81 -52.49 -0.41 2.02 15 9 S 2.70 68.34 5.01 -107.50 -0.54 67.80 15 10 O -1.00 -27.70 18.02 -57.17 -1.03 -28.73 15 11 O -0.99 -27.92 17.05 -57.17 -0.97 -28.90 15 12 N -1.08 -20.05 5.72 32.52 0.19 -19.86 15 13 C 0.20 3.51 5.83 -83.63 -0.49 3.02 15 14 C -0.14 -1.93 10.06 -39.14 -0.39 -2.33 15 15 C 0.10 1.29 11.17 -17.63 -0.20 1.09 15 16 N -0.44 -6.76 10.12 -9.90 -0.10 -6.86 15 17 C 0.09 1.49 6.74 -83.07 -0.56 0.93 15 18 C 0.55 8.52 8.32 34.77 0.29 8.81 15 19 O -0.50 -8.95 17.10 -19.21 -0.33 -9.28 15 20 O -0.49 -5.93 13.24 -40.42 -0.54 -6.47 15 21 C -0.09 -1.70 8.94 -38.82 -0.35 -2.05 15 22 H 0.29 7.57 8.31 -40.82 -0.34 7.23 15 23 H 0.42 6.21 8.95 -34.46 -0.31 5.90 15 24 H 0.15 1.71 8.06 -52.48 -0.42 1.29 15 25 H 0.17 1.48 8.06 -52.49 -0.42 1.06 15 26 H 0.41 2.68 9.11 45.56 0.42 3.09 15 27 H 0.16 3.02 7.59 -52.49 -0.40 2.62 15 LS Contribution 274.31 15.07 4.13 4.13 Total: -1.00 -36.57 274.31 -5.66 -42.23 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -0.68 Total: 7.79 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -1.50 Total: -13.40 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.81 Total: -50.07 kcal Atomic # 8 Polarization: -70.50 SS G_CDS: -2.87 Total: -73.37 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 68.34 SS G_CDS: -0.54 Total: 67.80 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -36.57 -5.66 -42.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083916355.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.481 kcal (2) G-P(sol) polarization free energy of solvation -36.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds