Wall clock time and date at job start Mon Mar 30 2020 06:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86791 * 120.00422 * 2 1 4 4 H 1.48503 * 109.47220 * 270.00378 * 3 2 1 5 5 H 1.48506 * 109.47246 * 30.00182 * 3 2 1 6 6 H 1.48497 * 109.47289 * 149.99899 * 3 2 1 7 7 C 1.37876 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99940 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00334 * 0.02562 * 7 2 1 10 10 O 1.42103 * 106.40483 * 66.45844 * 9 7 2 11 11 O 1.42098 * 106.40135 * 293.54032 * 9 7 2 12 12 N 1.65598 * 107.22030 * 179.97438 * 9 7 2 13 13 C 1.38846 * 120.00238 * 67.76163 * 12 9 7 14 14 C 1.39218 * 120.61119 * 324.64352 * 13 12 9 15 15 N 1.31550 * 120.76376 * 179.73808 * 14 13 12 16 16 C 1.31954 * 122.19714 * 0.25320 * 15 14 13 17 17 C 1.37900 * 121.14193 * 359.97438 * 16 15 14 18 18 C 1.40039 * 119.08795 * 0.02562 * 17 16 15 19 19 C 1.47604 * 120.98606 * 179.97438 * 18 17 16 20 20 O 1.21484 * 120.00232 * 179.97438 * 19 18 17 21 21 O 1.34727 * 120.00038 * 359.97438 * 19 18 17 22 22 H 0.97006 * 120.00083 * 359.97438 * 1 2 3 23 23 H 0.96998 * 119.99778 * 247.76403 * 12 9 7 24 24 H 1.07997 * 119.61565 * 0.02562 * 14 13 12 25 25 H 1.08001 * 119.42517 * 179.97438 * 16 15 14 26 26 H 1.08001 * 120.45822 * 179.97438 * 17 16 15 27 27 H 0.96705 * 117.00323 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1234 -2.7200 -0.0019 10 8 0.4517 -2.7945 -1.2519 11 8 0.4508 -2.7961 1.2475 12 7 2.2481 -3.9355 -0.0030 13 6 3.0536 -4.1370 1.1098 14 6 3.4969 -3.0575 1.8689 15 7 4.2560 -3.2453 2.9268 16 6 4.6355 -4.4479 3.3153 17 6 4.2491 -5.5761 2.6228 18 6 3.4403 -5.4348 1.4883 19 6 3.0027 -6.6138 0.7154 20 8 2.3008 -6.4706 -0.2657 21 8 3.3816 -7.8487 1.0982 22 1 -0.4850 0.8401 0.0004 23 1 2.3441 -4.5066 -0.7811 24 1 3.2105 -2.0546 1.5887 25 1 5.2596 -4.5503 4.1908 26 1 4.5664 -6.5550 2.9503 27 1 3.0699 -8.5899 0.5609 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083916957.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:18 Heat of formation + Delta-G solvation = -170.598767 kcal Electronic energy + Delta-G solvation = -18952.193524 eV Core-core repulsion = 15607.463752 eV Total energy + Delta-G solvation = -3344.729772 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.97481 -40.50504 -37.67762 -37.45816 -36.40775 -36.34471 -35.27866 -33.58403 -30.60414 -28.48568 -26.48370 -24.51473 -22.87198 -21.11918 -19.95929 -19.35588 -18.81116 -18.51061 -18.39997 -17.25035 -16.90634 -16.57814 -16.14752 -15.95706 -15.85209 -15.04667 -14.96446 -14.42710 -14.05558 -13.82953 -13.17807 -13.02253 -12.96291 -12.71416 -12.69068 -12.63088 -12.37895 -12.26775 -12.00682 -11.27680 -11.03964 -10.91563 -10.61160 -9.54533 -8.82435 -7.59495 -0.57779 -0.09495 0.13107 1.36815 1.37606 1.41803 1.55023 1.81977 2.17997 2.52437 2.56106 2.70178 3.44676 3.51328 3.60126 3.75139 3.84238 4.10691 4.31256 4.49259 4.76636 4.82443 5.04891 5.21085 5.39034 5.53311 5.78477 5.99704 6.68618 6.83882 6.86655 8.15040 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.025414 B = 0.007460 C = 0.006172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.503589 B = 3752.376081 C = 4535.415123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.995 3.005 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.241 1.241 7 C -1.033 5.033 8 H 0.134 0.866 9 S 2.698 3.302 10 O -1.030 7.030 11 O -1.024 7.024 12 N -1.045 6.045 13 C 0.175 3.825 14 C 0.026 3.974 15 N -0.443 5.443 16 C 0.058 3.942 17 C -0.064 4.064 18 C -0.145 4.145 19 C 0.540 3.460 20 O -0.542 6.542 21 O -0.487 6.487 22 H 0.303 0.697 23 H 0.429 0.571 24 H 0.174 0.826 25 H 0.213 0.787 26 H 0.198 0.802 27 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.615 -10.944 5.532 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.139 4.139 3 Si 0.812 3.188 4 H -0.179 1.179 5 H -0.186 1.186 6 H -0.164 1.164 7 C -1.167 5.167 8 H 0.152 0.848 9 S 2.801 3.199 10 O -1.020 7.020 11 O -1.014 7.014 12 N -0.792 5.792 13 C 0.071 3.929 14 C -0.135 4.135 15 N -0.152 5.152 16 C -0.099 4.099 17 C -0.084 4.084 18 C -0.159 4.159 19 C 0.385 3.615 20 O -0.433 6.433 21 O -0.301 6.301 22 H 0.113 0.887 23 H 0.270 0.730 24 H 0.191 0.809 25 H 0.230 0.770 26 H 0.215 0.785 27 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 11.597 -9.908 6.020 16.398 hybrid contribution -0.347 -0.375 -1.617 1.696 sum 11.250 -10.283 4.404 15.865 Atomic orbital electron populations 1.69981 1.08915 1.32801 1.40131 1.26043 0.95376 1.05318 0.87147 0.85056 0.79364 0.74242 0.80144 1.17905 1.18632 1.16406 1.30758 1.07282 1.10882 1.67765 0.84780 1.00870 0.72778 0.74227 0.72023 1.93340 1.74132 1.87988 1.46560 1.93352 1.73714 1.87842 1.46470 1.53697 1.51865 1.51305 1.22375 1.18785 0.91155 0.94312 0.88599 1.23644 0.96810 0.99493 0.93548 1.67528 1.08290 1.28110 1.11280 1.23584 0.99165 0.86015 1.01141 1.22831 0.91902 1.03385 0.90266 1.19512 1.07001 0.89022 1.00338 1.20445 0.75878 0.83894 0.81239 1.90822 1.37072 1.86952 1.28422 1.84460 1.71274 1.15733 1.58592 0.88705 0.72989 0.80905 0.77013 0.78500 0.69924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.96 13.19 21.45 0.28 -51.68 15 2 C 0.08 4.08 5.46 84.65 0.46 4.55 15 3 Si 0.99 39.97 29.54 68.60 2.03 42.00 15 4 H -0.25 -9.72 7.11 99.48 0.71 -9.02 15 5 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 6 H -0.24 -8.96 7.11 99.48 0.71 -8.26 15 7 C -1.03 -55.33 7.66 67.73 0.52 -54.81 15 8 H 0.13 6.34 6.77 -2.91 -0.02 6.32 15 9 S 2.70 149.91 4.66 -56.49 -0.26 149.65 15 10 O -1.03 -63.66 18.02 -128.00 -2.31 -65.97 15 11 O -1.02 -62.39 17.51 -128.00 -2.24 -64.63 15 12 N -1.04 -46.42 5.13 -50.63 -0.26 -46.68 15 13 C 0.17 6.82 6.18 38.85 0.24 7.06 15 14 C 0.03 1.03 10.23 84.97 0.87 1.90 15 15 N -0.44 -14.47 10.32 -195.43 -2.02 -16.49 15 16 C 0.06 1.28 11.15 84.59 0.94 2.23 15 17 C -0.06 -1.32 9.70 22.63 0.22 -1.10 15 18 C -0.15 -4.37 5.92 -19.79 -0.12 -4.49 15 19 C 0.54 14.94 8.28 70.29 0.58 15.52 15 20 O -0.54 -19.01 14.88 19.89 0.30 -18.71 15 21 O -0.49 -7.85 12.78 -56.37 -0.72 -8.57 15 22 H 0.30 15.82 8.31 -92.70 -0.77 15.05 15 23 H 0.43 17.93 6.69 -96.75 -0.65 17.28 15 24 H 0.17 7.55 4.44 -2.91 -0.01 7.54 15 25 H 0.21 2.50 8.06 -2.91 -0.02 2.48 15 26 H 0.20 2.17 7.71 -2.91 -0.02 2.14 15 27 H 0.44 3.03 9.11 -74.05 -0.67 2.35 15 Total: -1.00 -82.07 263.02 -1.53 -83.60 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -0.05 Total: 26.62 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 3.72 Total: -29.15 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -1.99 Total: -114.84 kcal Atomic # 8 Polarization: -152.91 SS G_CDS: -4.97 Total: -157.88 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Atomic # 16 Polarization: 149.91 SS G_CDS: -0.26 Total: 149.65 kcal Total: -82.07 -1.53 -83.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083916957.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.998 kcal (2) G-P(sol) polarization free energy of solvation -82.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds