Wall clock time and date at job start Mon Mar 30 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00479 * 2 1 4 4 H 1.48500 * 109.47465 * 270.00150 * 3 2 1 5 5 H 1.48503 * 109.47030 * 30.00048 * 3 2 1 6 6 H 1.48506 * 109.47221 * 150.00251 * 3 2 1 7 7 C 1.37880 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00263 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99931 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.39893 * 66.46251 * 9 7 2 11 11 O 1.42094 * 106.40405 * 293.54448 * 9 7 2 12 12 N 1.65602 * 107.21923 * 179.97438 * 9 7 2 13 13 C 1.39029 * 119.99471 * 65.00327 * 12 9 7 14 14 C 1.39126 * 119.63803 * 180.02562 * 13 12 9 15 15 C 1.39536 * 118.92060 * 180.25569 * 14 13 12 16 16 C 1.48069 * 120.88725 * 179.70163 * 15 14 13 17 17 O 1.21420 * 119.99779 * 359.97438 * 16 15 14 18 18 O 1.34674 * 119.99961 * 180.02562 * 16 15 14 19 19 C 1.40067 * 118.22803 * 359.43615 * 15 14 13 20 20 C 1.37943 * 119.16686 * 0.58494 * 19 15 14 21 21 N 1.31923 * 121.00825 * 359.67874 * 20 19 15 22 22 H 0.97001 * 119.99380 * 359.97438 * 1 2 3 23 23 H 0.96995 * 120.00391 * 245.00009 * 12 9 7 24 24 H 1.08002 * 120.53754 * 359.97423 * 14 13 12 25 25 H 0.96694 * 116.99470 * 180.02562 * 18 16 15 26 26 H 1.08002 * 120.41404 * 180.30296 * 19 15 14 27 27 H 1.07998 * 119.49810 * 179.70086 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4509 -2.7949 -1.2501 11 8 0.4517 -2.7955 1.2493 12 7 2.2481 -3.9355 -0.0019 13 6 3.0944 -4.1006 1.0886 14 6 4.0370 -5.1239 1.0794 15 6 4.8751 -5.2793 2.1841 16 6 5.8891 -6.3577 2.2231 17 8 5.9992 -7.1217 1.2859 18 8 6.6885 -6.4917 3.2987 19 6 4.7356 -4.3846 3.2526 20 6 3.7748 -3.3973 3.1817 21 7 2.9951 -3.2826 2.1238 22 1 -0.4849 0.8401 0.0004 23 1 2.3164 -4.5323 -0.7635 24 1 4.1155 -5.7900 0.2328 25 1 7.3353 -7.2101 3.2780 26 1 5.3692 -4.4695 4.1231 27 1 3.6593 -2.7076 4.0047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083917006.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:21 Heat of formation + Delta-G solvation = -137.715709 kcal Electronic energy + Delta-G solvation = -18436.483678 eV Core-core repulsion = 15093.179822 eV Total energy + Delta-G solvation = -3343.303856 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.75136 -39.56781 -36.33609 -35.32228 -34.89089 -34.01897 -33.06185 -32.56650 -29.40367 -26.14455 -25.54373 -23.15330 -21.73960 -19.07967 -18.74633 -18.03772 -17.53300 -16.43448 -16.27068 -15.86057 -15.58820 -15.27954 -14.61230 -14.36099 -14.17576 -13.75576 -13.52822 -13.38447 -12.04576 -12.02555 -11.85191 -11.33220 -11.19750 -11.09548 -11.00670 -10.82287 -10.58558 -10.32391 -10.21985 -9.87310 -9.25141 -9.20253 -8.84316 -8.13584 -6.68933 -5.27457 0.59739 1.29910 2.05646 2.50459 2.72729 3.08612 3.14721 3.21812 3.87184 3.96469 4.14053 4.65858 4.68938 4.89020 5.00884 5.03306 5.28419 5.63483 5.76729 5.77333 5.99887 6.18727 6.20485 6.47873 6.74779 7.33534 7.38654 7.63442 7.97765 8.21340 8.90705 10.26285 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.027754 B = 0.005773 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.630638 B = 4849.163343 C = 5336.456061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.134 3.866 3 Si 0.923 3.077 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.994 4.994 8 H 0.100 0.900 9 S 2.698 3.302 10 O -0.998 6.998 11 O -0.972 6.972 12 N -1.043 6.043 13 C 0.402 3.598 14 C -0.157 4.157 15 C -0.056 4.056 16 C 0.533 3.467 17 O -0.508 6.508 18 O -0.508 6.508 19 C -0.171 4.171 20 C 0.146 3.854 21 N -0.471 5.471 22 H 0.291 0.709 23 H 0.422 0.578 24 H 0.148 0.852 25 H 0.415 0.585 26 H 0.148 0.852 27 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.026 -8.302 6.251 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.084 4.084 3 Si 0.747 3.253 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.129 5.129 8 H 0.119 0.881 9 S 2.799 3.201 10 O -0.988 6.988 11 O -0.962 6.962 12 N -0.783 5.783 13 C 0.167 3.833 14 C -0.183 4.183 15 C -0.066 4.066 16 C 0.377 3.623 17 O -0.396 6.396 18 O -0.319 6.319 19 C -0.193 4.193 20 C -0.012 4.012 21 N -0.186 5.186 22 H 0.101 0.899 23 H 0.256 0.744 24 H 0.166 0.834 25 H 0.273 0.727 26 H 0.166 0.834 27 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.910 -7.492 6.020 13.805 hybrid contribution 2.061 -0.242 -0.415 2.117 sum 11.971 -7.734 5.605 15.315 Atomic orbital electron populations 1.69891 1.06732 1.30713 1.40449 1.24706 0.94463 1.00680 0.88513 0.86123 0.80169 0.79949 0.79026 1.19348 1.19975 1.18672 1.30180 1.05713 1.10630 1.66352 0.88125 1.01206 0.72113 0.73644 0.73122 1.93415 1.72100 1.87349 1.45947 1.93393 1.71582 1.86501 1.44687 1.54516 1.50909 1.50066 1.22782 1.17868 0.88282 0.89762 0.87338 1.21647 0.96760 1.00205 0.99679 1.19027 0.95893 0.95410 0.96229 1.20830 0.79357 0.82890 0.79249 1.90886 1.68557 1.43426 1.36779 1.84554 1.48254 1.55919 1.43204 1.22226 1.01253 0.96481 0.99336 1.22610 0.88910 0.95230 0.94493 1.67297 1.25553 1.25476 1.00276 0.89901 0.74421 0.83408 0.72665 0.83444 0.81276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.73 13.19 55.43 0.73 -24.00 15 2 C 0.13 3.71 5.46 -17.82 -0.10 3.62 15 3 Si 0.92 20.59 29.54 -169.99 -5.02 15.57 15 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 15 7 C -0.99 -27.24 9.33 30.60 0.29 -26.96 15 8 H 0.10 2.58 7.81 -52.49 -0.41 2.17 15 9 S 2.70 71.25 4.65 -107.50 -0.50 70.74 15 10 O -1.00 -28.65 18.02 -57.17 -1.03 -29.68 15 11 O -0.97 -28.23 16.89 -57.17 -0.97 -29.19 15 12 N -1.04 -20.83 5.85 31.12 0.18 -20.65 15 13 C 0.40 7.55 7.33 -155.07 -1.14 6.41 15 14 C -0.16 -2.38 9.51 -38.77 -0.37 -2.75 15 15 C -0.06 -0.76 5.90 -104.69 -0.62 -1.37 15 16 C 0.53 6.37 8.30 34.76 0.29 6.66 15 17 O -0.51 -7.31 17.23 -19.20 -0.33 -7.64 15 18 O -0.51 -4.16 12.78 -40.42 -0.52 -4.68 15 19 C -0.17 -2.09 9.70 -39.00 -0.38 -2.46 15 20 C 0.15 2.17 11.16 -17.62 -0.20 1.97 15 21 N -0.47 -9.37 8.29 -12.48 -0.10 -9.47 15 22 H 0.29 7.62 8.31 -40.82 -0.34 7.28 15 23 H 0.42 6.72 8.82 -34.47 -0.30 6.42 15 24 H 0.15 1.97 7.74 -52.49 -0.41 1.57 15 25 H 0.41 1.42 9.11 45.56 0.42 1.84 15 26 H 0.15 1.32 7.71 -52.49 -0.40 0.92 15 27 H 0.17 1.98 8.06 -52.49 -0.42 1.56 15 LS Contribution 272.00 15.07 4.10 4.10 Total: -1.00 -37.82 272.00 -6.34 -44.17 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -0.67 Total: 5.62 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -2.22 Total: -14.89 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.81 Total: -54.12 kcal Atomic # 8 Polarization: -68.35 SS G_CDS: -2.84 Total: -71.19 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 71.25 SS G_CDS: -0.50 Total: 70.74 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -37.82 -6.34 -44.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083917006.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.548 kcal (2) G-P(sol) polarization free energy of solvation -37.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds