Wall clock time and date at job start Mon Mar 30 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00479 * 2 1 4 4 H 1.48500 * 109.47465 * 270.00150 * 3 2 1 5 5 H 1.48503 * 109.47030 * 30.00048 * 3 2 1 6 6 H 1.48506 * 109.47221 * 150.00251 * 3 2 1 7 7 C 1.37880 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00263 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99931 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.39893 * 66.46251 * 9 7 2 11 11 O 1.42094 * 106.40405 * 293.54448 * 9 7 2 12 12 N 1.65602 * 107.21923 * 179.97438 * 9 7 2 13 13 C 1.39029 * 119.99471 * 65.00327 * 12 9 7 14 14 C 1.39126 * 119.63803 * 180.02562 * 13 12 9 15 15 C 1.39536 * 118.92060 * 180.25569 * 14 13 12 16 16 C 1.48069 * 120.88725 * 179.70163 * 15 14 13 17 17 O 1.21420 * 119.99779 * 359.97438 * 16 15 14 18 18 O 1.34674 * 119.99961 * 180.02562 * 16 15 14 19 19 C 1.40067 * 118.22803 * 359.43615 * 15 14 13 20 20 C 1.37943 * 119.16686 * 0.58494 * 19 15 14 21 21 N 1.31923 * 121.00825 * 359.67874 * 20 19 15 22 22 H 0.97001 * 119.99380 * 359.97438 * 1 2 3 23 23 H 0.96995 * 120.00391 * 245.00009 * 12 9 7 24 24 H 1.08002 * 120.53754 * 359.97423 * 14 13 12 25 25 H 0.96694 * 116.99470 * 180.02562 * 18 16 15 26 26 H 1.08002 * 120.41404 * 180.30296 * 19 15 14 27 27 H 1.07998 * 119.49810 * 179.70086 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4509 -2.7949 -1.2501 11 8 0.4517 -2.7955 1.2493 12 7 2.2481 -3.9355 -0.0019 13 6 3.0944 -4.1006 1.0886 14 6 4.0370 -5.1239 1.0794 15 6 4.8751 -5.2793 2.1841 16 6 5.8891 -6.3577 2.2231 17 8 5.9992 -7.1217 1.2859 18 8 6.6885 -6.4917 3.2987 19 6 4.7356 -4.3846 3.2526 20 6 3.7748 -3.3973 3.1817 21 7 2.9951 -3.2826 2.1238 22 1 -0.4849 0.8401 0.0004 23 1 2.3164 -4.5323 -0.7635 24 1 4.1155 -5.7900 0.2328 25 1 7.3353 -7.2101 3.2780 26 1 5.3692 -4.4695 4.1231 27 1 3.6593 -2.7076 4.0047 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083917006.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:21 Heat of formation + Delta-G solvation = -169.763872 kcal Electronic energy + Delta-G solvation = -18437.873390 eV Core-core repulsion = 15093.179822 eV Total energy + Delta-G solvation = -3344.693569 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.81634 -40.63580 -37.44750 -37.15716 -36.35052 -36.16749 -35.13120 -33.76441 -30.68174 -28.24741 -26.64251 -24.37633 -22.84275 -20.98282 -19.91441 -19.54546 -18.74882 -18.34478 -17.52334 -17.10589 -16.76812 -16.69591 -16.24224 -16.02431 -15.60497 -15.27773 -15.16508 -14.34787 -13.99222 -13.38793 -13.11834 -12.99175 -12.76163 -12.69414 -12.58122 -12.42011 -12.39254 -12.28623 -11.98629 -11.21911 -11.08685 -10.90980 -10.50437 -9.45393 -8.72949 -7.42252 -0.48247 0.09672 0.16515 1.34860 1.36203 1.50834 1.52366 1.84624 2.20621 2.49673 2.61530 2.76790 3.46610 3.61640 3.74945 3.87993 3.94267 4.15324 4.46162 4.63914 4.69535 4.93193 5.01007 5.29150 5.48684 5.56870 5.90216 5.91959 6.80753 6.90772 6.97492 8.24409 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.027754 B = 0.005773 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.630638 B = 4849.163343 C = 5336.456061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.992 3.008 4 H -0.256 1.256 5 H -0.261 1.261 6 H -0.251 1.251 7 C -1.011 5.011 8 H 0.111 0.889 9 S 2.712 3.288 10 O -1.035 7.035 11 O -1.010 7.010 12 N -1.038 6.038 13 C 0.366 3.634 14 C -0.150 4.150 15 C -0.063 4.063 16 C 0.547 3.453 17 O -0.536 6.536 18 O -0.491 6.491 19 C -0.134 4.134 20 C 0.131 3.869 21 N -0.523 5.523 22 H 0.299 0.701 23 H 0.436 0.564 24 H 0.161 0.839 25 H 0.439 0.561 26 H 0.191 0.809 27 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.959 -8.318 7.749 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.810 3.190 4 H -0.180 1.180 5 H -0.185 1.185 6 H -0.174 1.174 7 C -1.145 5.145 8 H 0.129 0.871 9 S 2.814 3.186 10 O -1.025 7.025 11 O -1.000 7.000 12 N -0.784 5.784 13 C 0.133 3.867 14 C -0.175 4.175 15 C -0.072 4.072 16 C 0.390 3.610 17 O -0.426 6.426 18 O -0.305 6.305 19 C -0.155 4.155 20 C -0.027 4.027 21 N -0.239 5.239 22 H 0.109 0.891 23 H 0.273 0.727 24 H 0.179 0.821 25 H 0.302 0.698 26 H 0.208 0.792 27 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 12.871 -7.552 7.541 16.720 hybrid contribution 1.300 -0.380 -0.725 1.536 sum 14.170 -7.932 6.816 17.612 Atomic orbital electron populations 1.69980 1.08641 1.32277 1.41762 1.25941 0.95362 1.05067 0.87580 0.85109 0.79080 0.74888 0.79896 1.18030 1.18538 1.17389 1.30478 1.06355 1.11499 1.66193 0.87074 1.00361 0.72365 0.74100 0.71746 1.93353 1.73911 1.88168 1.47073 1.93331 1.73413 1.87336 1.45887 1.53681 1.50928 1.49382 1.24444 1.17999 0.89765 0.91750 0.87162 1.21676 0.95892 0.99077 1.00900 1.19278 0.95933 0.96166 0.95854 1.20404 0.79158 0.81848 0.79545 1.90895 1.69390 1.44300 1.38057 1.84482 1.48101 1.56944 1.41002 1.22623 0.99457 0.93809 0.99641 1.23173 0.88946 0.96640 0.93935 1.67160 1.27761 1.27135 1.01889 0.89115 0.72650 0.82139 0.69814 0.79174 0.78747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.46 13.19 21.45 0.28 -53.17 15 2 C 0.07 4.08 5.46 84.65 0.46 4.54 15 3 Si 0.99 41.63 29.54 68.60 2.03 43.65 15 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 15 5 H -0.26 -10.28 7.11 99.48 0.71 -9.57 15 6 H -0.25 -9.90 7.11 99.48 0.71 -9.19 15 7 C -1.01 -56.32 9.33 67.73 0.63 -55.69 15 8 H 0.11 5.74 7.81 -2.91 -0.02 5.71 15 9 S 2.71 148.46 4.65 -56.49 -0.26 148.20 15 10 O -1.03 -61.94 18.02 -128.00 -2.31 -64.24 15 11 O -1.01 -61.12 16.89 -128.00 -2.16 -63.28 15 12 N -1.04 -42.65 5.85 -55.47 -0.32 -42.97 15 13 C 0.37 13.76 7.33 133.08 0.98 14.74 15 14 C -0.15 -4.38 9.51 22.80 0.22 -4.16 15 15 C -0.06 -1.51 5.90 -19.91 -0.12 -1.62 15 16 C 0.55 11.15 8.30 70.43 0.58 11.74 15 17 O -0.54 -14.04 17.23 20.09 0.35 -13.70 15 18 O -0.49 -5.71 12.78 -55.84 -0.71 -6.42 15 19 C -0.13 -2.78 9.70 22.64 0.22 -2.56 15 20 C 0.13 3.62 11.16 84.61 0.94 4.56 15 21 N -0.52 -20.77 8.29 -193.41 -1.60 -22.38 15 22 H 0.30 16.00 8.31 -92.71 -0.77 15.23 15 23 H 0.44 14.42 8.82 -96.75 -0.85 13.56 15 24 H 0.16 4.13 7.74 -2.91 -0.02 4.11 15 25 H 0.44 0.92 9.11 -74.06 -0.67 0.25 15 26 H 0.19 2.30 7.71 -2.91 -0.02 2.28 15 27 H 0.20 4.10 8.06 -2.91 -0.02 4.07 15 Total: -1.00 -84.69 272.00 -1.07 -85.75 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -0.27 Total: 17.02 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 3.92 Total: -28.46 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -1.65 Total: -118.53 kcal Atomic # 8 Polarization: -142.81 SS G_CDS: -4.84 Total: -147.64 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 148.46 SS G_CDS: -0.26 Total: 148.20 kcal Total: -84.69 -1.07 -85.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083917006.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.010 kcal (2) G-P(sol) polarization free energy of solvation -84.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds