Wall clock time and date at job start Mon Mar 30 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99862 * 2 1 4 4 C 1.53000 * 109.46758 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47243 * 66.65103 * 4 3 2 6 6 C 1.46905 * 110.99458 * 283.12730 * 5 4 3 7 7 C 1.50697 * 109.47265 * 304.33916 * 6 5 4 8 8 H 1.08000 * 120.00225 * 354.87431 * 7 6 5 9 9 C 1.37881 * 120.00154 * 174.86170 * 7 6 5 10 10 N 1.31507 * 120.00321 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99588 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47286 * 269.99619 * 11 9 7 13 13 H 1.48499 * 109.47473 * 29.99563 * 11 9 7 14 14 H 1.48498 * 109.47004 * 149.99698 * 11 9 7 15 15 C 1.46896 * 110.99975 * 159.17934 * 5 4 3 16 16 C 1.53008 * 109.47083 * 199.76326 * 15 5 4 17 17 C 1.53000 * 109.46969 * 183.82563 * 16 15 5 18 18 C 1.53007 * 109.46710 * 180.02562 * 17 16 15 19 19 H 1.09000 * 110.27692 * 54.29651 * 18 17 16 20 20 C 1.54946 * 110.30742 * 176.39109 * 18 17 16 21 21 C 1.55414 * 100.89252 * 155.28507 * 20 18 17 22 22 C 1.54383 * 102.30934 * 325.98928 * 21 20 18 23 23 O 1.43236 * 107.58832 * 21.28268 * 22 21 20 24 24 H 1.08995 * 109.47032 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47170 * 300.00145 * 1 2 3 26 26 H 1.09004 * 109.46918 * 59.99921 * 1 2 3 27 27 H 1.09002 * 109.47338 * 59.99844 * 3 2 1 28 28 H 1.09003 * 109.46880 * 299.99917 * 3 2 1 29 29 H 1.08999 * 109.47078 * 306.64473 * 4 3 2 30 30 H 1.09006 * 109.46914 * 186.64501 * 4 3 2 31 31 H 1.09007 * 109.46924 * 184.34202 * 6 5 4 32 32 H 1.08993 * 109.47040 * 64.34378 * 6 5 4 33 33 H 0.97004 * 120.00397 * 180.02562 * 10 9 7 34 34 H 1.08996 * 109.47075 * 319.75668 * 15 5 4 35 35 H 1.08996 * 109.47576 * 79.76625 * 15 5 4 36 36 H 1.08997 * 109.46738 * 303.82558 * 16 15 5 37 37 H 1.09000 * 109.47174 * 63.82685 * 16 15 5 38 38 H 1.09000 * 109.46950 * 299.99333 * 17 16 15 39 39 H 1.08993 * 109.47702 * 60.00258 * 17 16 15 40 40 H 1.09002 * 111.12559 * 273.27746 * 20 18 17 41 41 H 1.09001 * 111.12953 * 37.43736 * 20 18 17 42 42 H 1.09002 * 110.88363 * 207.75497 * 21 20 18 43 43 H 1.09003 * 110.93658 * 84.24683 * 21 20 18 44 44 H 1.09004 * 109.82810 * 261.77334 * 22 21 20 45 45 H 1.08996 * 109.90749 * 140.84101 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9797 0.5990 -1.2724 6 6 3.7462 -0.8512 -1.2942 7 6 4.4244 -1.4871 -0.1081 8 1 5.0421 -0.8890 0.5454 9 6 4.2561 -2.8324 0.1429 10 7 4.8475 -3.3872 1.1782 11 14 3.1879 -3.8668 -0.9877 12 1 1.7872 -3.8533 -0.4947 13 1 3.2342 -3.3065 -2.3622 14 1 3.6930 -5.2632 -1.0052 15 6 5.3925 0.9086 -1.5295 16 6 5.6898 0.7339 -3.0202 17 6 7.1813 0.9633 -3.2731 18 6 7.4784 0.7892 -4.7639 19 1 6.8306 1.4355 -5.3562 20 6 8.9667 1.1061 -5.0561 21 6 9.1932 0.2812 -6.3537 22 6 8.2860 -0.9469 -6.1256 23 8 7.3020 -0.5829 -5.1505 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8495 0.5443 0.8236 30 1 3.9783 2.1735 0.1183 31 1 4.1537 -1.2711 -2.2139 32 1 2.6751 -1.0474 -1.2486 33 1 4.7294 -4.3337 1.3546 34 1 5.5980 1.9380 -1.2363 35 1 6.0235 0.2333 -0.9517 36 1 5.4202 -0.2762 -3.3285 37 1 5.1088 1.4561 -3.5937 38 1 7.4508 1.9735 -2.9648 39 1 7.7624 0.2411 -2.6997 40 1 9.1138 2.1712 -5.2352 41 1 9.6093 0.7528 -4.2497 42 1 10.2369 -0.0193 -6.4458 43 1 8.8737 0.8417 -7.2323 44 1 8.8808 -1.7825 -5.7567 45 1 7.7965 -1.2251 -7.0589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087248343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:50 Heat of formation + Delta-G solvation = -96.192184 kcal Electronic energy + Delta-G solvation = -21903.737023 eV Core-core repulsion = 18728.239181 eV Total energy + Delta-G solvation = -3175.497843 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.39395 -37.82703 -36.29877 -33.55848 -32.17121 -32.05152 -29.80694 -28.61843 -26.87711 -25.62492 -24.19997 -22.58359 -21.82875 -21.17867 -20.32679 -19.21693 -16.86090 -16.83330 -15.99997 -15.75833 -15.51340 -14.96892 -14.48345 -14.32831 -14.07689 -13.86188 -13.50353 -13.21999 -12.93705 -12.53332 -12.26519 -11.96071 -11.76130 -11.56379 -11.45265 -11.24751 -11.08519 -10.99568 -10.92242 -10.80181 -10.52827 -10.38581 -10.24694 -10.02093 -9.78342 -9.54958 -9.36240 -9.29309 -8.94792 -8.33950 -7.02193 -5.90852 -3.85679 3.45131 3.49932 3.57575 3.89377 4.43886 4.47743 4.60452 4.65172 4.81679 5.01245 5.18308 5.22242 5.44541 5.46919 5.51995 5.61178 5.63520 5.68419 5.70848 5.74620 5.78216 5.89572 5.94348 5.96261 6.00792 6.07788 6.14854 6.16287 6.19958 6.33757 6.45436 6.55949 6.91474 6.94611 7.01319 7.19344 7.22728 7.53568 7.80807 7.87838 8.25614 8.34102 8.64829 9.10723 9.75156 11.22746 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016580 B = 0.005041 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.329176 B = 5552.788117 C = 6468.961707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.074 3.926 4 C 0.052 3.948 5 N -0.533 5.533 6 C 0.149 3.851 7 C -0.530 4.530 8 H 0.070 0.930 9 C 0.072 3.928 10 N -0.908 5.908 11 Si 0.879 3.121 12 H -0.277 1.277 13 H -0.265 1.265 14 H -0.293 1.293 15 C 0.057 3.943 16 C -0.106 4.106 17 C -0.116 4.116 18 C 0.083 3.917 19 H 0.068 0.932 20 C -0.153 4.153 21 C -0.156 4.156 22 C 0.049 3.951 23 O -0.372 6.372 24 H 0.077 0.923 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.021 0.979 32 H 0.050 0.950 33 H 0.260 0.740 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 11.095 -11.187 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C -0.003 4.003 4 C -0.077 4.077 5 N -0.257 5.257 6 C 0.023 3.977 7 C -0.569 4.569 8 H 0.088 0.912 9 C -0.129 4.129 10 N -0.547 5.547 11 Si 0.707 3.293 12 H -0.203 1.203 13 H -0.190 1.190 14 H -0.219 1.219 15 C -0.072 4.072 16 C -0.144 4.144 17 C -0.154 4.154 18 C 0.025 3.975 19 H 0.085 0.915 20 C -0.191 4.191 21 C -0.194 4.194 22 C -0.028 4.028 23 O -0.291 6.291 24 H 0.096 0.904 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.762 10.837 -11.397 15.968 hybrid contribution -0.072 -0.712 0.078 0.719 sum 2.690 10.126 -11.319 15.424 Atomic orbital electron populations 1.22662 0.83413 1.02001 0.98745 1.88263 1.17462 1.27182 1.94865 1.22506 0.94677 0.84810 0.98305 1.22089 0.92599 0.98561 0.94431 1.62433 1.17180 1.15271 1.30770 1.20366 0.98026 0.83150 0.96156 1.21570 1.29771 0.94561 1.10969 0.91244 1.24864 0.95271 0.97899 0.94834 1.69933 1.44543 1.11963 1.28295 0.86787 0.81111 0.79152 0.82250 1.20291 1.18983 1.21911 1.21994 0.90718 0.98822 0.95640 1.21443 0.93479 1.02797 0.96649 1.21712 0.98523 1.01667 0.93509 1.23034 0.94551 0.83421 0.96466 0.91461 1.23349 0.97314 1.00761 0.97638 1.23128 1.00775 0.97019 0.98487 1.23083 0.90199 0.97004 0.92482 1.88530 1.53448 1.27658 1.59511 0.90398 0.95046 0.94921 0.94493 0.93818 0.91214 0.91953 0.96110 0.93209 0.93084 0.93397 0.93203 0.90939 0.92626 0.91269 0.91078 0.90152 0.90194 0.90337 0.90817 0.91529 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.36 -7.51 7.98 -35.23 -0.28 -7.79 16 3 C 0.07 1.34 6.26 37.16 0.23 1.57 16 4 C 0.05 1.03 5.35 -3.83 -0.02 1.01 16 5 N -0.53 -11.47 4.56 -236.07 -1.08 -12.55 16 6 C 0.15 3.79 3.74 -4.97 -0.02 3.78 16 7 C -0.53 -15.31 7.68 -34.44 -0.26 -15.57 16 8 H 0.07 2.16 6.39 -52.49 -0.34 1.82 16 9 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 10 N -0.91 -28.73 13.96 55.43 0.77 -27.96 16 11 Si 0.88 23.07 27.37 -169.99 -4.65 18.42 16 12 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 13 H -0.27 -6.81 6.69 56.52 0.38 -6.43 16 14 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 15 C 0.06 1.10 4.86 -3.82 -0.02 1.08 16 16 C -0.11 -1.85 5.30 -26.73 -0.14 -1.99 16 17 C -0.12 -1.68 4.95 -26.73 -0.13 -1.81 16 18 C 0.08 1.09 3.41 -25.70 -0.09 1.00 16 19 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.15 -1.55 6.58 -24.42 -0.16 -1.71 16 21 C -0.16 -1.44 7.02 -24.73 -0.17 -1.61 16 22 C 0.05 0.58 7.80 37.88 0.30 0.88 16 23 O -0.37 -5.89 10.75 -35.23 -0.38 -6.27 16 24 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.64 5.89 -51.93 -0.31 1.33 16 30 H 0.06 1.05 7.58 -51.93 -0.39 0.66 16 31 H 0.02 0.55 6.03 -51.93 -0.31 0.24 16 32 H 0.05 1.32 4.91 -51.93 -0.25 1.06 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 34 H 0.05 0.81 7.58 -51.93 -0.39 0.42 16 35 H 0.05 1.12 6.67 -51.93 -0.35 0.77 16 36 H 0.07 1.50 6.51 -51.93 -0.34 1.16 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -33.18 346.86 -8.04 -41.22 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -8.18 Total: -0.57 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 0.52 Total: -9.74 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: -0.30 Total: -40.51 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.66 Total: -14.05 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.65 Total: 18.42 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.18 -8.04 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087248343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.971 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds