Wall clock time and date at job start Mon Mar 30 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99862 * 2 1 4 4 C 1.53000 * 109.46758 * 180.02562 * 3 2 1 5 5 N 1.46895 * 109.47243 * 66.65103 * 4 3 2 6 6 C 1.46905 * 110.99458 * 283.12730 * 5 4 3 7 7 C 1.50697 * 109.47265 * 304.33916 * 6 5 4 8 8 H 1.08000 * 120.00225 * 354.87431 * 7 6 5 9 9 C 1.37881 * 120.00154 * 174.86170 * 7 6 5 10 10 N 1.31507 * 120.00321 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99588 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47286 * 269.99619 * 11 9 7 13 13 H 1.48499 * 109.47473 * 29.99563 * 11 9 7 14 14 H 1.48498 * 109.47004 * 149.99698 * 11 9 7 15 15 C 1.46896 * 110.99975 * 159.17934 * 5 4 3 16 16 C 1.53008 * 109.47083 * 199.76326 * 15 5 4 17 17 C 1.53000 * 109.46969 * 183.82563 * 16 15 5 18 18 C 1.53007 * 109.46710 * 180.02562 * 17 16 15 19 19 H 1.09000 * 110.27692 * 54.29651 * 18 17 16 20 20 C 1.54946 * 110.30742 * 176.39109 * 18 17 16 21 21 C 1.55414 * 100.89252 * 155.28507 * 20 18 17 22 22 C 1.54383 * 102.30934 * 325.98928 * 21 20 18 23 23 O 1.43236 * 107.58832 * 21.28268 * 22 21 20 24 24 H 1.08995 * 109.47032 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47170 * 300.00145 * 1 2 3 26 26 H 1.09004 * 109.46918 * 59.99921 * 1 2 3 27 27 H 1.09002 * 109.47338 * 59.99844 * 3 2 1 28 28 H 1.09003 * 109.46880 * 299.99917 * 3 2 1 29 29 H 1.08999 * 109.47078 * 306.64473 * 4 3 2 30 30 H 1.09006 * 109.46914 * 186.64501 * 4 3 2 31 31 H 1.09007 * 109.46924 * 184.34202 * 6 5 4 32 32 H 1.08993 * 109.47040 * 64.34378 * 6 5 4 33 33 H 0.97004 * 120.00397 * 180.02562 * 10 9 7 34 34 H 1.08996 * 109.47075 * 319.75668 * 15 5 4 35 35 H 1.08996 * 109.47576 * 79.76625 * 15 5 4 36 36 H 1.08997 * 109.46738 * 303.82558 * 16 15 5 37 37 H 1.09000 * 109.47174 * 63.82685 * 16 15 5 38 38 H 1.09000 * 109.46950 * 299.99333 * 17 16 15 39 39 H 1.08993 * 109.47702 * 60.00258 * 17 16 15 40 40 H 1.09002 * 111.12559 * 273.27746 * 20 18 17 41 41 H 1.09001 * 111.12953 * 37.43736 * 20 18 17 42 42 H 1.09002 * 110.88363 * 207.75497 * 21 20 18 43 43 H 1.09003 * 110.93658 * 84.24683 * 21 20 18 44 44 H 1.09004 * 109.82810 * 261.77334 * 22 21 20 45 45 H 1.08996 * 109.90749 * 140.84101 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9797 0.5990 -1.2724 6 6 3.7462 -0.8512 -1.2942 7 6 4.4244 -1.4871 -0.1081 8 1 5.0421 -0.8890 0.5454 9 6 4.2561 -2.8324 0.1429 10 7 4.8475 -3.3872 1.1782 11 14 3.1879 -3.8668 -0.9877 12 1 1.7872 -3.8533 -0.4947 13 1 3.2342 -3.3065 -2.3622 14 1 3.6930 -5.2632 -1.0052 15 6 5.3925 0.9086 -1.5295 16 6 5.6898 0.7339 -3.0202 17 6 7.1813 0.9633 -3.2731 18 6 7.4784 0.7892 -4.7639 19 1 6.8306 1.4355 -5.3562 20 6 8.9667 1.1061 -5.0561 21 6 9.1932 0.2812 -6.3537 22 6 8.2860 -0.9469 -6.1256 23 8 7.3020 -0.5829 -5.1505 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8495 0.5443 0.8236 30 1 3.9783 2.1735 0.1183 31 1 4.1537 -1.2711 -2.2139 32 1 2.6751 -1.0474 -1.2486 33 1 4.7294 -4.3337 1.3546 34 1 5.5980 1.9380 -1.2363 35 1 6.0235 0.2333 -0.9517 36 1 5.4202 -0.2762 -3.3285 37 1 5.1088 1.4561 -3.5937 38 1 7.4508 1.9735 -2.9648 39 1 7.7624 0.2411 -2.6997 40 1 9.1138 2.1712 -5.2352 41 1 9.6093 0.7528 -4.2497 42 1 10.2369 -0.0193 -6.4458 43 1 8.8737 0.8417 -7.2323 44 1 8.8808 -1.7825 -5.7567 45 1 7.7965 -1.2251 -7.0589 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087248343.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:49 Heat of formation + Delta-G solvation = -119.964137 kcal Electronic energy + Delta-G solvation = -21904.767853 eV Core-core repulsion = 18728.239181 eV Total energy + Delta-G solvation = -3176.528672 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38920 -39.41467 -37.85716 -35.03094 -34.27611 -32.98110 -31.18223 -30.31512 -28.43621 -26.94590 -25.67365 -24.37816 -22.87681 -22.25330 -21.54159 -21.06567 -19.00297 -17.84074 -17.40966 -17.07284 -16.81206 -16.45372 -16.11294 -15.70259 -15.57832 -15.55654 -14.87405 -14.41527 -14.31989 -14.01571 -13.81410 -13.49816 -13.08137 -12.91115 -12.85541 -12.60537 -12.52208 -12.35131 -12.29228 -12.19999 -12.10358 -11.86380 -11.68732 -11.62461 -11.55928 -11.25922 -11.16593 -10.71831 -10.40336 -10.30696 -8.88811 -8.25051 -6.23173 1.33360 1.35064 1.47215 2.38580 2.97361 3.10289 3.15377 3.30921 3.63872 3.86508 4.03681 4.14146 4.22619 4.31022 4.37572 4.38958 4.49197 4.52951 4.59317 4.60747 4.64790 4.75393 4.80815 4.86178 4.87075 4.88128 4.92642 4.92796 4.99814 5.05580 5.15308 5.21471 5.25546 5.29248 5.41203 5.44854 5.56669 5.65682 6.18375 6.23586 6.43502 6.47904 6.63623 6.79649 7.40866 8.91775 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016580 B = 0.005041 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.329176 B = 5552.788117 C = 6468.961707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.075 3.925 4 C 0.049 3.951 5 N -0.527 5.527 6 C 0.165 3.835 7 C -0.521 4.521 8 H 0.034 0.966 9 C 0.012 3.988 10 N -0.952 5.952 11 Si 0.941 3.059 12 H -0.266 1.266 13 H -0.258 1.258 14 H -0.287 1.287 15 C 0.058 3.942 16 C -0.096 4.096 17 C -0.111 4.111 18 C 0.076 3.924 19 H 0.078 0.922 20 C -0.147 4.147 21 C -0.147 4.147 22 C 0.037 3.963 23 O -0.414 6.414 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.097 0.903 31 H 0.007 0.993 32 H 0.048 0.952 33 H 0.262 0.738 34 H 0.081 0.919 35 H 0.009 0.991 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.062 0.938 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.538 13.215 -13.117 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.001 4.001 4 C -0.079 4.079 5 N -0.250 5.250 6 C 0.038 3.962 7 C -0.560 4.560 8 H 0.052 0.948 9 C -0.184 4.184 10 N -0.594 5.594 11 Si 0.765 3.235 12 H -0.191 1.191 13 H -0.182 1.182 14 H -0.213 1.213 15 C -0.071 4.071 16 C -0.134 4.134 17 C -0.149 4.149 18 C 0.019 3.981 19 H 0.096 0.904 20 C -0.185 4.185 21 C -0.184 4.184 22 C -0.040 4.040 23 O -0.335 6.335 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.115 0.885 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.028 0.972 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.080 0.920 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.223 12.980 -13.336 18.742 hybrid contribution 0.118 -1.292 0.742 1.495 sum 2.341 11.688 -12.593 17.340 Atomic orbital electron populations 1.22831 0.81073 1.02547 1.00720 1.88168 1.20234 1.28976 1.95264 1.22568 0.92826 0.84309 1.00404 1.22214 0.94770 0.99105 0.91804 1.62475 1.18364 1.12547 1.31616 1.20069 0.97067 0.85481 0.93603 1.21786 1.28626 0.94360 1.11184 0.94820 1.25714 0.96899 0.99377 0.96434 1.70067 1.46570 1.12429 1.30362 0.85803 0.79659 0.77517 0.80475 1.19107 1.18181 1.21291 1.22084 0.88837 0.99611 0.96526 1.21344 0.96023 1.00892 0.95158 1.21685 0.95787 1.02619 0.94772 1.23167 0.97034 0.82701 0.95210 0.90408 1.23335 0.94728 1.02498 0.97905 1.23119 1.01163 0.95550 0.98573 1.23303 0.90289 0.98343 0.92016 1.88491 1.55035 1.29262 1.60707 0.90697 0.92973 0.92921 0.91854 0.91982 0.95672 0.88471 0.97454 0.93458 0.92954 0.90037 0.97218 0.94857 0.90874 0.88273 0.93491 0.87515 0.90759 0.88560 0.89155 0.91964 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -16.58 7.98 -148.98 -1.19 -17.77 16 3 C 0.08 2.57 6.26 71.98 0.45 3.02 16 4 C 0.05 1.93 5.35 86.30 0.46 2.40 16 5 N -0.53 -22.60 4.56 -900.80 -4.11 -26.71 16 6 C 0.17 8.55 3.74 85.56 0.32 8.87 16 7 C -0.52 -31.34 7.68 25.60 0.20 -31.14 16 8 H 0.03 2.22 6.39 -2.91 -0.02 2.21 16 9 C 0.01 0.77 5.47 84.66 0.46 1.23 16 10 N -0.95 -62.49 13.96 21.45 0.30 -62.19 16 11 Si 0.94 48.52 27.37 68.60 1.88 50.40 16 12 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 13 H -0.26 -12.86 6.69 99.48 0.67 -12.20 16 14 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 15 C 0.06 2.24 4.86 86.31 0.42 2.66 16 16 C -0.10 -3.35 5.30 30.60 0.16 -3.19 16 17 C -0.11 -3.13 4.95 30.60 0.15 -2.97 16 18 C 0.08 1.89 3.41 31.26 0.11 2.00 16 19 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 20 C -0.15 -2.61 6.58 32.09 0.21 -2.40 16 21 C -0.15 -2.32 7.02 31.89 0.22 -2.10 16 22 C 0.04 0.84 7.80 72.45 0.56 1.41 16 23 O -0.41 -13.18 10.75 -148.98 -1.60 -14.78 16 24 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.02 1.22 5.89 -2.39 -0.01 1.20 16 30 H 0.10 3.07 7.58 -2.38 -0.02 3.06 16 31 H 0.01 0.40 6.03 -2.38 -0.01 0.39 16 32 H 0.05 2.51 4.91 -2.39 -0.01 2.50 16 33 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 34 H 0.08 2.61 7.58 -2.39 -0.02 2.59 16 35 H 0.01 0.44 6.67 -2.39 -0.02 0.43 16 36 H 0.03 1.41 6.51 -2.39 -0.02 1.39 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.40 8.06 -2.39 -0.02 1.38 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -75.65 346.86 1.15 -74.50 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.89 Total: 14.78 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 4.98 Total: -18.24 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -3.81 Total: -88.90 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -2.79 Total: -32.55 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 1.88 Total: 50.40 kcal Total: -75.65 1.15 -74.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087248343.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.462 kcal (2) G-P(sol) polarization free energy of solvation -75.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds