Wall clock time and date at job start Mon Mar 30 2020 06:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47285 * 269.52246 * 3 2 1 5 5 C 1.36785 * 120.00623 * 263.34005 * 4 3 2 6 6 H 1.07993 * 120.00658 * 214.61780 * 5 4 3 7 7 C 1.39083 * 119.99599 * 34.62125 * 5 4 3 8 8 N 1.31348 * 120.00103 * 5.52723 * 7 5 4 9 9 Si 1.86796 * 119.99921 * 185.53041 * 7 5 4 10 10 H 1.48504 * 109.47118 * 90.00146 * 9 7 5 11 11 H 1.48510 * 109.47119 * 209.99707 * 9 7 5 12 12 H 1.48497 * 109.47433 * 329.99983 * 9 7 5 13 13 C 1.34776 * 119.99314 * 83.34313 * 4 3 2 14 14 O 1.21671 * 120.00385 * 5.34805 * 13 4 3 15 15 C 1.47064 * 119.99716 * 185.35030 * 13 4 3 16 16 N 1.30832 * 126.17717 * 355.22856 * 15 13 4 17 17 N 1.26256 * 116.24856 * 180.02562 * 16 15 13 18 18 C 1.30020 * 117.74696 * 359.97438 * 17 16 15 19 19 Cl 1.73602 * 125.53956 * 180.02562 * 18 17 16 20 20 S 1.71267 * 108.91538 * 0.02562 * 18 17 16 21 21 H 1.09005 * 109.46652 * 149.52859 * 3 2 1 22 22 H 1.08996 * 109.47507 * 29.52991 * 3 2 1 23 23 H 0.96996 * 119.99872 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 0.0124 1.3812 5 6 3.4534 1.1940 1.9705 6 1 4.2722 1.2209 2.6741 7 6 2.7618 2.3610 1.6634 8 7 1.6992 2.3113 0.8930 9 14 3.3443 3.9991 2.3467 10 1 4.3078 4.6159 1.3998 11 1 2.1796 4.9027 2.5265 12 1 4.0085 3.7810 3.6568 13 6 3.1939 -1.1413 2.0711 14 8 2.9699 -2.2017 1.5182 15 6 3.5710 -1.1183 3.4924 16 7 3.9216 -0.0629 4.1814 17 7 4.2096 -0.2587 5.3950 18 6 4.1327 -1.4754 5.8467 19 17 4.4804 -1.9718 7.4736 20 16 3.6327 -2.5089 4.5758 21 1 2.9709 0.8866 -0.5212 22 1 2.9718 -0.8933 -0.5065 23 1 1.2167 3.1251 0.6792 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087694759.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:14 Heat of formation + Delta-G solvation = 76.309335 kcal Electronic energy + Delta-G solvation = -16017.257174 eV Core-core repulsion = 13020.402961 eV Total energy + Delta-G solvation = -2996.854212 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 271.988 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.66944 -38.89971 -36.98573 -35.80579 -34.63351 -32.12100 -31.12693 -28.04811 -26.57015 -25.04148 -22.04213 -19.87314 -19.14384 -18.20774 -17.09648 -16.47103 -15.44278 -15.15540 -14.91596 -14.41744 -13.78194 -13.40586 -13.12256 -12.88261 -12.22456 -12.03238 -11.78145 -11.68946 -11.45762 -11.33987 -11.14716 -10.60443 -10.46763 -10.25690 -9.85244 -9.46987 -9.37463 -9.28916 -9.15523 -8.32393 -6.92036 -4.43181 0.30926 0.68158 1.58245 1.92931 2.56809 3.00974 3.07735 3.14761 3.48512 3.77889 3.89420 4.06470 4.43844 4.60710 5.08867 5.16283 5.24177 5.77681 6.17475 6.27263 7.06955 7.16095 7.95979 8.50207 8.69740 8.77552 8.90723 9.22204 10.08923 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.007353 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.705599 B = 3807.037003 C = 4878.098895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.253 3.747 3 C 0.229 3.771 4 N -0.389 5.389 5 C -0.295 4.295 6 H 0.137 0.863 7 C 0.042 3.958 8 N -0.840 5.840 9 Si 0.937 3.063 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.255 1.255 13 C 0.510 3.490 14 O -0.592 6.592 15 C 0.002 3.998 16 N -0.200 5.200 17 N -0.252 5.252 18 C -0.015 4.015 19 Cl 0.030 6.970 20 S 0.207 5.793 21 H 0.124 0.876 22 H 0.100 0.900 23 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.405 -3.946 4.909 8.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.065 4.065 3 C 0.103 3.897 4 N -0.105 5.105 5 C -0.427 4.427 6 H 0.154 0.846 7 C -0.169 4.169 8 N -0.475 5.475 9 Si 0.761 3.239 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.178 1.178 13 C 0.298 3.702 14 O -0.478 6.478 15 C -0.272 4.272 16 N -0.043 5.043 17 N -0.095 5.095 18 C -0.318 4.318 19 Cl 0.058 6.942 20 S 0.448 5.552 21 H 0.142 0.858 22 H 0.118 0.882 23 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.565 -4.148 4.770 7.797 hybrid contribution 0.520 1.110 0.749 1.437 sum 5.084 -3.038 5.519 8.095 Atomic orbital electron populations 1.80864 1.13476 1.12713 1.07853 1.28773 0.94958 0.89829 0.92942 1.18696 0.82127 1.04160 0.84734 1.43602 1.50896 1.06523 1.09519 1.20753 1.14944 0.83032 1.24004 0.84632 1.25783 0.93980 1.01516 0.95584 1.69633 1.14877 1.31054 1.31954 0.85698 0.78636 0.79096 0.80451 1.19528 1.20512 1.17850 1.16524 0.86064 0.85130 0.82492 1.90761 1.58930 1.29750 1.68384 1.29623 1.05161 0.90267 1.02193 1.72680 1.12693 1.22777 0.96190 1.71419 1.14131 1.16778 1.07219 1.29532 1.10650 0.95676 0.95982 1.98390 1.93222 1.88872 1.13759 1.84698 1.60957 1.10254 0.99314 0.85847 0.88183 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.43 18.54 42.15 0.78 -10.65 14 2 C 0.25 5.73 13.07 -20.76 -0.27 5.45 14 3 C 0.23 4.55 5.10 -6.83 -0.03 4.51 14 4 N -0.39 -8.65 2.56 -119.30 -0.31 -8.95 14 5 C -0.29 -6.64 8.11 -15.03 -0.12 -6.76 14 6 H 0.14 3.08 5.71 -52.49 -0.30 2.78 14 7 C 0.04 0.94 5.16 -17.44 -0.09 0.85 14 8 N -0.84 -19.51 9.38 55.50 0.52 -18.98 14 9 Si 0.94 18.06 29.56 -169.99 -5.02 13.03 14 10 H -0.27 -4.99 7.11 56.52 0.40 -4.59 14 11 H -0.28 -5.53 7.11 56.52 0.40 -5.13 14 12 H -0.25 -5.07 7.11 56.52 0.40 -4.66 14 13 C 0.51 11.49 7.54 -12.68 -0.10 11.40 14 14 O -0.59 -13.94 16.64 5.21 0.09 -13.85 14 15 C 0.00 0.04 7.33 -14.40 -0.11 -0.07 14 16 N -0.20 -4.30 8.39 32.89 0.28 -4.02 14 17 N -0.25 -5.02 11.60 31.90 0.37 -4.65 14 18 C -0.01 -0.25 8.20 52.00 0.43 0.18 14 19 Cl 0.03 0.40 29.33 -51.86 -1.52 -1.12 14 20 S 0.21 3.47 23.15 -107.50 -2.49 0.98 14 21 H 0.12 2.28 7.17 -51.93 -0.37 1.90 14 22 H 0.10 1.74 7.56 -51.93 -0.39 1.35 14 23 H 0.29 6.43 8.31 -40.82 -0.34 6.09 14 LS Contribution 253.72 15.07 3.82 3.82 Total: -1.00 -27.10 253.72 -3.97 -31.07 By element: Atomic # 1 Polarization: -2.06 SS G_CDS: -0.20 Total: -2.26 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: -0.29 Total: 15.56 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 1.64 Total: -47.25 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.85 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.03 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -2.49 Total: 0.98 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -1.52 Total: -1.12 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.10 -3.97 -31.07 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087694759.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.382 kcal (2) G-P(sol) polarization free energy of solvation -27.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds