Wall clock time and date at job start Mon Mar 30 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47285 * 269.52246 * 3 2 1 5 5 C 1.36785 * 120.00623 * 263.34005 * 4 3 2 6 6 H 1.07993 * 120.00658 * 214.61780 * 5 4 3 7 7 C 1.39083 * 119.99599 * 34.62125 * 5 4 3 8 8 N 1.31348 * 120.00103 * 5.52723 * 7 5 4 9 9 Si 1.86796 * 119.99921 * 185.53041 * 7 5 4 10 10 H 1.48504 * 109.47118 * 90.00146 * 9 7 5 11 11 H 1.48510 * 109.47119 * 209.99707 * 9 7 5 12 12 H 1.48497 * 109.47433 * 329.99983 * 9 7 5 13 13 C 1.34776 * 119.99314 * 83.34313 * 4 3 2 14 14 O 1.21671 * 120.00385 * 5.34805 * 13 4 3 15 15 C 1.47064 * 119.99716 * 185.35030 * 13 4 3 16 16 N 1.30832 * 126.17717 * 355.22856 * 15 13 4 17 17 N 1.26256 * 116.24856 * 180.02562 * 16 15 13 18 18 C 1.30020 * 117.74696 * 359.97438 * 17 16 15 19 19 Cl 1.73602 * 125.53956 * 180.02562 * 18 17 16 20 20 S 1.71267 * 108.91538 * 0.02562 * 18 17 16 21 21 H 1.09005 * 109.46652 * 149.52859 * 3 2 1 22 22 H 1.08996 * 109.47507 * 29.52991 * 3 2 1 23 23 H 0.96996 * 119.99872 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 0.0124 1.3812 5 6 3.4534 1.1940 1.9705 6 1 4.2722 1.2209 2.6741 7 6 2.7618 2.3610 1.6634 8 7 1.6992 2.3113 0.8930 9 14 3.3443 3.9991 2.3467 10 1 4.3078 4.6159 1.3998 11 1 2.1796 4.9027 2.5265 12 1 4.0085 3.7810 3.6568 13 6 3.1939 -1.1413 2.0711 14 8 2.9699 -2.2017 1.5182 15 6 3.5710 -1.1183 3.4924 16 7 3.9216 -0.0629 4.1814 17 7 4.2096 -0.2587 5.3950 18 6 4.1327 -1.4754 5.8467 19 17 4.4804 -1.9718 7.4736 20 16 3.6327 -2.5089 4.5758 21 1 2.9709 0.8866 -0.5212 22 1 2.9718 -0.8933 -0.5065 23 1 1.2167 3.1251 0.6792 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087694759.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:12 Heat of formation + Delta-G solvation = 59.076760 kcal Electronic energy + Delta-G solvation = -16018.004434 eV Core-core repulsion = 13020.402961 eV Total energy + Delta-G solvation = -2997.601473 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 271.988 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -42.24039 -40.57774 -38.25598 -37.54678 -36.39622 -33.77475 -32.69631 -29.64641 -28.14772 -26.68113 -23.64140 -21.46573 -20.70727 -19.80443 -18.72107 -18.07737 -16.99428 -16.72411 -16.59485 -15.95738 -15.44874 -15.04217 -14.67852 -14.50662 -13.85330 -13.52242 -13.32535 -13.18845 -12.99716 -12.88987 -12.82238 -12.19224 -12.07502 -11.79028 -11.40576 -11.06734 -10.86263 -10.83728 -10.74014 -10.00407 -8.55331 -6.16628 -1.16595 -0.75187 0.08183 0.53701 0.99812 1.48668 1.51608 1.61528 1.81899 2.10832 2.27060 2.34860 2.78061 2.95711 3.46727 3.59863 3.69779 4.14395 4.64199 4.74745 5.41413 5.51591 6.27976 6.84510 7.01087 7.06909 7.34329 7.53704 8.46019 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.020378 B = 0.007353 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.705599 B = 3807.037003 C = 4878.098895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.265 3.735 3 C 0.229 3.771 4 N -0.400 5.400 5 C -0.316 4.316 6 H 0.131 0.869 7 C 0.016 3.984 8 N -0.873 5.873 9 Si 0.988 3.012 10 H -0.256 1.256 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.606 6.606 15 C -0.034 4.034 16 N -0.209 5.209 17 N -0.282 5.282 18 C -0.003 4.003 19 Cl 0.072 6.928 20 S 0.289 5.711 21 H 0.136 0.864 22 H 0.125 0.875 23 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.497 -5.074 6.449 11.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.053 4.053 3 C 0.103 3.897 4 N -0.117 5.117 5 C -0.447 4.447 6 H 0.148 0.852 7 C -0.191 4.191 8 N -0.509 5.509 9 Si 0.812 3.188 10 H -0.180 1.180 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.297 3.703 14 O -0.493 6.493 15 C -0.310 4.310 16 N -0.053 5.053 17 N -0.125 5.125 18 C -0.306 4.306 19 Cl 0.099 6.901 20 S 0.530 5.470 21 H 0.153 0.847 22 H 0.143 0.857 23 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.676 -5.259 6.305 9.981 hybrid contribution 0.286 1.135 0.595 1.313 sum 5.962 -4.123 6.900 10.008 Atomic orbital electron populations 1.80844 1.14684 1.14238 1.09121 1.29332 0.95567 0.88588 0.91776 1.18954 0.80475 1.05888 0.84377 1.43680 1.51338 1.06390 1.10251 1.20672 1.15657 0.83321 1.25029 0.85223 1.26285 0.93848 1.03384 0.95602 1.69693 1.16132 1.31087 1.33968 0.84949 0.77882 0.76453 0.79538 1.18030 1.21486 1.18990 1.16800 0.85369 0.85021 0.83149 1.90730 1.59309 1.30225 1.69044 1.29608 1.06492 0.92497 1.02357 1.72682 1.11874 1.23824 0.96935 1.71455 1.16060 1.18137 1.06854 1.29984 1.07517 0.95243 0.97846 1.98421 1.92662 1.88280 1.10729 1.84458 1.58381 1.07191 0.96947 0.84651 0.85723 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.07 18.54 20.01 0.37 -24.70 14 2 C 0.26 12.06 13.07 89.44 1.17 13.22 14 3 C 0.23 9.04 5.10 84.57 0.43 9.47 14 4 N -0.40 -17.75 2.56 -649.57 -1.66 -19.41 14 5 C -0.32 -14.30 8.11 84.12 0.68 -13.62 14 6 H 0.13 5.94 5.71 -2.91 -0.02 5.92 14 7 C 0.02 0.70 5.16 84.97 0.44 1.14 14 8 N -0.87 -41.14 9.38 21.69 0.20 -40.93 14 9 Si 0.99 37.40 29.56 68.60 2.03 39.42 14 10 H -0.26 -8.98 7.11 99.48 0.71 -8.27 14 11 H -0.29 -11.23 7.11 99.48 0.71 -10.52 14 12 H -0.27 -10.37 7.11 99.48 0.71 -9.66 14 13 C 0.51 22.60 7.54 86.56 0.65 23.25 14 14 O -0.61 -27.86 16.64 -4.26 -0.07 -27.93 14 15 C -0.03 -1.38 7.33 87.16 0.64 -0.74 14 16 N -0.21 -8.80 8.39 -49.85 -0.42 -9.22 14 17 N -0.28 -10.68 11.60 -52.97 -0.61 -11.29 14 18 C 0.00 -0.09 8.20 130.51 1.07 0.98 14 19 Cl 0.07 1.64 29.33 -2.72 -0.08 1.56 14 20 S 0.29 8.85 23.15 -56.49 -1.31 7.54 14 21 H 0.14 5.00 7.17 -2.38 -0.02 4.98 14 22 H 0.13 4.24 7.56 -2.39 -0.02 4.22 14 23 H 0.28 12.95 8.31 -92.71 -0.77 12.18 14 Total: -1.00 -57.24 253.72 4.83 -52.41 By element: Atomic # 1 Polarization: -2.46 SS G_CDS: 1.30 Total: -1.16 kcal Atomic # 6 Polarization: 28.62 SS G_CDS: 5.08 Total: 33.71 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -2.12 Total: -105.56 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.07 Total: -27.93 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.42 kcal Atomic # 16 Polarization: 8.85 SS G_CDS: -1.31 Total: 7.54 kcal Atomic # 17 Polarization: 1.64 SS G_CDS: -0.08 Total: 1.56 kcal Total: -57.24 4.83 -52.41 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087694759.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.482 kcal (2) G-P(sol) polarization free energy of solvation -57.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds