Wall clock time and date at job start Mon Mar 30 2020 05:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 114.00163 * 2 1 4 4 C 1.52998 * 109.46990 * 184.73809 * 3 2 1 5 5 N 1.46899 * 109.47054 * 58.41190 * 4 3 2 6 6 C 1.46904 * 110.99540 * 195.85916 * 5 4 3 7 7 C 1.52995 * 109.47064 * 74.83488 * 6 5 4 8 8 C 1.50695 * 115.55410 * 53.91589 * 7 6 5 9 9 H 1.07992 * 120.00132 * 215.69366 * 8 7 6 10 10 C 1.37878 * 119.99845 * 35.69891 * 8 7 6 11 11 N 1.31512 * 120.00117 * 198.57968 * 10 8 7 12 12 Si 1.86803 * 120.00073 * 18.57849 * 10 8 7 13 13 H 1.48507 * 109.46935 * 266.89944 * 12 10 8 14 14 H 1.48501 * 109.47255 * 26.89809 * 12 10 8 15 15 H 1.48500 * 109.47366 * 146.90117 * 12 10 8 16 16 C 1.53006 * 117.49714 * 199.58835 * 7 6 5 17 17 C 1.53004 * 117.49484 * 268.24560 * 7 6 5 18 18 C 1.46895 * 111.00222 * 71.90650 * 5 4 3 19 19 H 1.09001 * 109.47371 * 148.31946 * 18 5 4 20 20 C 1.52999 * 109.47059 * 268.31772 * 18 5 4 21 21 C 1.53002 * 109.47163 * 28.31819 * 18 5 4 22 22 O 1.42898 * 109.47265 * 63.27436 * 21 18 5 23 23 C 1.42897 * 113.99910 * 184.61496 * 22 21 18 24 24 H 1.09003 * 109.46802 * 304.95760 * 1 2 3 25 25 H 1.08997 * 109.46921 * 64.95134 * 1 2 3 26 26 H 1.08992 * 109.47135 * 184.95457 * 1 2 3 27 27 H 1.08997 * 109.47068 * 64.73208 * 3 2 1 28 28 H 1.09010 * 109.47003 * 304.73587 * 3 2 1 29 29 H 1.08994 * 109.47143 * 298.40895 * 4 3 2 30 30 H 1.08999 * 109.46933 * 178.41087 * 4 3 2 31 31 H 1.08999 * 109.47121 * 314.82992 * 6 5 4 32 32 H 1.09003 * 109.47099 * 194.83200 * 6 5 4 33 33 H 0.97005 * 120.00194 * 179.97438 * 11 10 8 34 34 H 1.08994 * 117.50048 * 215.00252 * 16 7 6 35 35 H 1.09006 * 117.49858 * 0.02562 * 16 7 6 36 36 H 1.08997 * 117.49928 * 359.97438 * 17 7 6 37 37 H 1.08996 * 117.49809 * 144.97857 * 17 7 6 38 38 H 1.09001 * 109.47199 * 56.63867 * 20 18 5 39 39 H 1.09003 * 109.47347 * 176.63916 * 20 18 5 40 40 H 1.09000 * 109.47255 * 296.63754 * 20 18 5 41 41 H 1.09003 * 109.47124 * 183.27546 * 21 18 5 42 42 H 1.09000 * 109.47048 * 303.26801 * 21 18 5 43 43 H 1.08999 * 109.47232 * 295.05617 * 23 22 21 44 44 H 1.09006 * 109.47569 * 55.05787 * 23 22 21 45 45 H 1.08998 * 109.47284 * 175.05865 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5310 1.1866 -0.1192 5 7 3.8706 0.4653 -1.3530 6 6 5.2645 0.0024 -1.3254 7 6 5.3840 -1.2004 -0.3875 8 6 4.4431 -2.3426 -0.6721 9 1 4.0277 -2.9159 0.1433 10 6 4.1128 -2.6557 -1.9736 11 7 3.0444 -3.3803 -2.2247 12 14 5.1827 -2.0507 -3.3802 13 1 4.6506 -0.7603 -3.8873 14 1 6.5733 -1.8568 -2.8965 15 1 5.1748 -3.0538 -4.4752 16 6 6.7769 -1.5477 0.1420 17 6 5.7366 -0.9232 1.0753 18 6 3.6155 1.2973 -2.5364 19 1 4.3309 1.0450 -3.3191 20 6 2.1945 1.0418 -3.0428 21 6 3.7664 2.7737 -2.1641 22 8 5.1142 3.0285 -1.7635 23 6 5.3394 4.3593 -1.2942 24 1 -0.3633 0.5888 0.8423 25 1 -0.3633 0.4351 -0.9310 26 1 -0.3633 -1.0237 0.0887 27 1 1.7574 1.8158 0.9293 28 1 1.6231 1.8756 -0.8446 29 1 3.9212 0.6408 0.7399 30 1 3.9722 2.1829 -0.1476 31 1 5.9075 0.8069 -0.9685 32 1 5.5707 -0.2886 -2.3303 33 1 2.8118 -3.6003 -3.1404 34 1 7.0127 -2.6022 0.2845 35 1 7.6080 -0.9189 -0.1775 36 1 5.8838 0.1160 1.3693 37 1 5.2877 -1.5668 1.8318 38 1 1.4824 1.2370 -2.2410 39 1 1.9843 1.7022 -3.8842 40 1 2.1044 0.0041 -3.3641 41 1 3.5205 3.3929 -3.0267 42 1 3.0917 3.0118 -1.3418 43 1 5.1841 5.0638 -2.1113 44 1 4.6434 4.5820 -0.4853 45 1 6.3622 4.4473 -0.9280 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088259410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:21 Heat of formation + Delta-G solvation = -22.674396 kcal Electronic energy + Delta-G solvation = -23862.582200 eV Core-core repulsion = 20690.272328 eV Total energy + Delta-G solvation = -3172.309872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.41885 -37.23085 -36.83729 -35.23388 -31.84064 -31.05149 -29.59265 -27.40433 -26.11025 -25.50078 -24.99586 -23.87010 -22.06272 -21.09510 -19.45651 -18.73174 -16.96490 -16.44912 -16.07130 -15.77437 -15.41368 -15.23771 -14.59607 -14.35426 -13.92821 -13.71052 -13.17535 -12.91273 -12.80848 -12.30870 -12.18780 -12.15763 -11.99880 -11.61470 -11.37143 -11.25210 -11.09594 -10.85671 -10.63501 -10.46515 -10.31964 -10.10955 -9.89529 -9.63182 -9.60686 -9.16178 -8.96104 -8.88278 -8.39917 -7.95318 -7.20851 -5.82244 -3.65463 3.44058 3.56560 3.60347 3.82038 4.41884 4.55798 4.69152 5.07875 5.12116 5.24671 5.32244 5.42962 5.45774 5.55363 5.59529 5.62862 5.67022 5.73555 5.82534 5.84989 5.87264 5.96775 6.03574 6.07193 6.14796 6.21219 6.25903 6.40774 6.50079 6.55124 6.63025 6.68913 6.85270 6.88826 6.93082 7.22703 7.24495 7.34200 7.80625 7.97039 8.07156 8.17708 8.83121 9.24526 9.89602 11.31184 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.010058 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.476791 B = 2783.229821 C = 3289.794973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.338 6.338 3 C 0.061 3.939 4 C 0.050 3.950 5 N -0.475 5.475 6 C 0.091 3.909 7 C 0.029 3.971 8 C -0.457 4.457 9 H 0.069 0.931 10 C 0.103 3.897 11 N -0.884 5.884 12 Si 0.872 3.128 13 H -0.273 1.273 14 H -0.273 1.273 15 H -0.308 1.308 16 C -0.217 4.217 17 C -0.194 4.194 18 C 0.074 3.926 19 H 0.079 0.921 20 C -0.137 4.137 21 C 0.027 3.973 22 O -0.383 6.383 23 C 0.031 3.969 24 H 0.025 0.975 25 H 0.030 0.970 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.026 0.974 32 H 0.058 0.942 33 H 0.257 0.743 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.036 0.964 44 H 0.038 0.962 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 14.856 1.225 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.255 6.255 3 C -0.017 4.017 4 C -0.078 4.078 5 N -0.197 5.197 6 C -0.036 4.036 7 C 0.027 3.973 8 C -0.493 4.493 9 H 0.087 0.913 10 C -0.100 4.100 11 N -0.521 5.521 12 Si 0.705 3.295 13 H -0.201 1.201 14 H -0.198 1.198 15 H -0.237 1.237 16 C -0.256 4.256 17 C -0.231 4.231 18 C -0.035 4.035 19 H 0.097 0.903 20 C -0.194 4.194 21 C -0.051 4.051 22 O -0.302 6.302 23 C -0.066 4.066 24 H 0.044 0.956 25 H 0.048 0.952 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.702 14.022 1.046 14.163 hybrid contribution 0.696 1.620 -0.745 1.914 sum -1.006 15.642 0.302 15.677 Atomic orbital electron populations 1.22659 0.83334 1.02290 0.98226 1.88361 1.17147 1.25253 1.94727 1.22734 0.94773 0.86204 0.97956 1.22326 0.93303 0.97023 0.95174 1.61880 1.22719 1.35692 0.99375 1.21845 0.87256 0.95317 0.99134 1.19320 0.92866 0.95088 0.90003 1.19982 1.24260 1.12026 0.93050 0.91302 1.24623 0.93420 0.94022 0.97895 1.70018 1.22779 1.39783 1.19517 0.87226 0.82297 0.77497 0.82522 1.20058 1.19838 1.23702 1.23160 0.94359 0.99751 1.08312 1.22767 1.05927 0.98532 0.95879 1.21993 0.98708 0.87549 0.95292 0.90262 1.21895 0.95022 1.02825 0.99700 1.23484 0.83683 0.99243 0.98650 1.87999 1.28454 1.29438 1.84286 1.22696 1.01711 0.84398 0.97769 0.95628 0.95153 0.89860 0.94826 0.93764 0.89264 0.93434 0.95600 0.92432 0.93335 0.89928 0.91973 0.91667 0.90282 0.91818 0.93872 0.90689 0.93760 0.92404 0.94519 0.94325 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.34 -6.83 10.36 -35.23 -0.37 -7.19 16 3 C 0.06 1.01 4.90 37.16 0.18 1.19 16 4 C 0.05 0.91 4.64 -3.83 -0.02 0.90 16 5 N -0.47 -9.96 3.57 -226.65 -0.81 -10.77 16 6 C 0.09 2.07 3.42 -3.82 -0.01 2.06 16 7 C 0.03 0.70 1.12 -155.66 -0.17 0.53 16 8 C -0.46 -13.12 9.20 -34.44 -0.32 -13.44 16 9 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 10 C 0.10 3.00 5.28 -17.82 -0.09 2.91 16 11 N -0.88 -27.12 13.96 55.43 0.77 -26.35 16 12 Si 0.87 22.53 24.10 -169.99 -4.10 18.43 16 13 H -0.27 -6.66 5.00 56.52 0.28 -6.38 16 14 H -0.27 -6.97 7.02 56.52 0.40 -6.58 16 15 H -0.31 -8.12 7.11 56.52 0.40 -7.72 16 16 C -0.22 -4.87 9.96 -26.69 -0.27 -5.14 16 17 C -0.19 -4.19 8.43 -26.69 -0.22 -4.42 16 18 C 0.07 1.37 2.34 -67.71 -0.16 1.21 16 19 H 0.08 1.61 5.83 -51.93 -0.30 1.31 16 20 C -0.14 -2.36 9.24 37.16 0.34 -2.02 16 21 C 0.03 0.41 4.44 37.16 0.17 0.57 16 22 O -0.38 -5.98 8.30 -35.23 -0.29 -6.27 16 23 C 0.03 0.35 10.99 101.05 1.11 1.46 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.67 4.27 -51.92 -0.22 0.45 16 29 H 0.09 1.80 5.58 -51.93 -0.29 1.51 16 30 H 0.05 0.79 4.74 -51.93 -0.25 0.54 16 31 H 0.03 0.56 7.13 -51.93 -0.37 0.19 16 32 H 0.06 1.39 2.64 -51.93 -0.14 1.25 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.28 7.72 -51.93 -0.40 0.87 16 37 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 38 H 0.06 1.05 4.64 -51.93 -0.24 0.81 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.80 4.82 -51.93 -0.25 0.55 16 43 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -31.94 333.94 -5.75 -37.69 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.64 Total: 2.01 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 1.65 Total: -12.57 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.04 Total: -37.12 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.66 Total: -13.47 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.10 Total: 18.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.94 -5.75 -37.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.012 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds