Wall clock time and date at job start Mon Mar 30 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 114.00163 * 2 1 4 4 C 1.52998 * 109.46990 * 184.73809 * 3 2 1 5 5 N 1.46899 * 109.47054 * 58.41190 * 4 3 2 6 6 C 1.46904 * 110.99540 * 195.85916 * 5 4 3 7 7 C 1.52995 * 109.47064 * 74.83488 * 6 5 4 8 8 C 1.50695 * 115.55410 * 53.91589 * 7 6 5 9 9 H 1.07992 * 120.00132 * 215.69366 * 8 7 6 10 10 C 1.37878 * 119.99845 * 35.69891 * 8 7 6 11 11 N 1.31512 * 120.00117 * 198.57968 * 10 8 7 12 12 Si 1.86803 * 120.00073 * 18.57849 * 10 8 7 13 13 H 1.48507 * 109.46935 * 266.89944 * 12 10 8 14 14 H 1.48501 * 109.47255 * 26.89809 * 12 10 8 15 15 H 1.48500 * 109.47366 * 146.90117 * 12 10 8 16 16 C 1.53006 * 117.49714 * 199.58835 * 7 6 5 17 17 C 1.53004 * 117.49484 * 268.24560 * 7 6 5 18 18 C 1.46895 * 111.00222 * 71.90650 * 5 4 3 19 19 H 1.09001 * 109.47371 * 148.31946 * 18 5 4 20 20 C 1.52999 * 109.47059 * 268.31772 * 18 5 4 21 21 C 1.53002 * 109.47163 * 28.31819 * 18 5 4 22 22 O 1.42898 * 109.47265 * 63.27436 * 21 18 5 23 23 C 1.42897 * 113.99910 * 184.61496 * 22 21 18 24 24 H 1.09003 * 109.46802 * 304.95760 * 1 2 3 25 25 H 1.08997 * 109.46921 * 64.95134 * 1 2 3 26 26 H 1.08992 * 109.47135 * 184.95457 * 1 2 3 27 27 H 1.08997 * 109.47068 * 64.73208 * 3 2 1 28 28 H 1.09010 * 109.47003 * 304.73587 * 3 2 1 29 29 H 1.08994 * 109.47143 * 298.40895 * 4 3 2 30 30 H 1.08999 * 109.46933 * 178.41087 * 4 3 2 31 31 H 1.08999 * 109.47121 * 314.82992 * 6 5 4 32 32 H 1.09003 * 109.47099 * 194.83200 * 6 5 4 33 33 H 0.97005 * 120.00194 * 179.97438 * 11 10 8 34 34 H 1.08994 * 117.50048 * 215.00252 * 16 7 6 35 35 H 1.09006 * 117.49858 * 0.02562 * 16 7 6 36 36 H 1.08997 * 117.49928 * 359.97438 * 17 7 6 37 37 H 1.08996 * 117.49809 * 144.97857 * 17 7 6 38 38 H 1.09001 * 109.47199 * 56.63867 * 20 18 5 39 39 H 1.09003 * 109.47347 * 176.63916 * 20 18 5 40 40 H 1.09000 * 109.47255 * 296.63754 * 20 18 5 41 41 H 1.09003 * 109.47124 * 183.27546 * 21 18 5 42 42 H 1.09000 * 109.47048 * 303.26801 * 21 18 5 43 43 H 1.08999 * 109.47232 * 295.05617 * 23 22 21 44 44 H 1.09006 * 109.47569 * 55.05787 * 23 22 21 45 45 H 1.08998 * 109.47284 * 175.05865 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5310 1.1866 -0.1192 5 7 3.8706 0.4653 -1.3530 6 6 5.2645 0.0024 -1.3254 7 6 5.3840 -1.2004 -0.3875 8 6 4.4431 -2.3426 -0.6721 9 1 4.0277 -2.9159 0.1433 10 6 4.1128 -2.6557 -1.9736 11 7 3.0444 -3.3803 -2.2247 12 14 5.1827 -2.0507 -3.3802 13 1 4.6506 -0.7603 -3.8873 14 1 6.5733 -1.8568 -2.8965 15 1 5.1748 -3.0538 -4.4752 16 6 6.7769 -1.5477 0.1420 17 6 5.7366 -0.9232 1.0753 18 6 3.6155 1.2973 -2.5364 19 1 4.3309 1.0450 -3.3191 20 6 2.1945 1.0418 -3.0428 21 6 3.7664 2.7737 -2.1641 22 8 5.1142 3.0285 -1.7635 23 6 5.3394 4.3593 -1.2942 24 1 -0.3633 0.5888 0.8423 25 1 -0.3633 0.4351 -0.9310 26 1 -0.3633 -1.0237 0.0887 27 1 1.7574 1.8158 0.9293 28 1 1.6231 1.8756 -0.8446 29 1 3.9212 0.6408 0.7399 30 1 3.9722 2.1829 -0.1476 31 1 5.9075 0.8069 -0.9685 32 1 5.5707 -0.2886 -2.3303 33 1 2.8118 -3.6003 -3.1404 34 1 7.0127 -2.6022 0.2845 35 1 7.6080 -0.9189 -0.1775 36 1 5.8838 0.1160 1.3693 37 1 5.2877 -1.5668 1.8318 38 1 1.4824 1.2370 -2.2410 39 1 1.9843 1.7022 -3.8842 40 1 2.1044 0.0041 -3.3641 41 1 3.5205 3.3929 -3.0267 42 1 3.0917 3.0118 -1.3418 43 1 5.1841 5.0638 -2.1113 44 1 4.6434 4.5820 -0.4853 45 1 6.3622 4.4473 -0.9280 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:20 Heat of formation + Delta-G solvation = -45.964981 kcal Electronic energy + Delta-G solvation = -23863.592156 eV Core-core repulsion = 20690.272328 eV Total energy + Delta-G solvation = -3173.319828 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78973 -38.58642 -38.37184 -36.68991 -34.06911 -32.45303 -31.05994 -28.41215 -27.89094 -27.04539 -26.11631 -25.57581 -23.52491 -22.78621 -20.86171 -20.70881 -18.32272 -18.09192 -17.49223 -17.19978 -16.84934 -16.50650 -16.21677 -15.67559 -15.48660 -15.31314 -14.78690 -14.49128 -14.41349 -13.95322 -13.70261 -13.58939 -13.26380 -13.01842 -12.78931 -12.67445 -12.43445 -12.35317 -12.22118 -12.17595 -11.94358 -11.84727 -11.50030 -11.33851 -11.21893 -10.83628 -10.65307 -10.33693 -10.15868 -10.09008 -8.69659 -8.08572 -5.94316 1.37568 1.44083 1.52761 2.52170 2.76217 2.95791 3.18107 3.26703 3.65958 3.92467 4.13697 4.15276 4.28358 4.32791 4.36085 4.42025 4.46495 4.50174 4.54432 4.57815 4.60338 4.61870 4.65136 4.67301 4.74829 4.81512 4.85244 4.90137 4.92131 4.95070 5.00132 5.13889 5.17410 5.23303 5.40568 5.49071 5.56497 5.93072 6.23889 6.42460 6.50397 6.56167 6.73251 6.96700 7.63252 9.08829 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.010058 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.476791 B = 2783.229821 C = 3289.794973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.061 3.939 4 C 0.051 3.949 5 N -0.502 5.502 6 C 0.102 3.898 7 C 0.000 4.000 8 C -0.458 4.458 9 H 0.018 0.982 10 C 0.061 3.939 11 N -0.930 5.930 12 Si 0.929 3.071 13 H -0.254 1.254 14 H -0.265 1.265 15 H -0.318 1.318 16 C -0.209 4.209 17 C -0.171 4.171 18 C 0.069 3.931 19 H 0.057 0.943 20 C -0.131 4.131 21 C 0.037 3.963 22 O -0.411 6.411 23 C 0.026 3.974 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.256 0.744 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 18.445 1.221 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.016 4.016 4 C -0.077 4.077 5 N -0.224 5.224 6 C -0.025 4.025 7 C -0.001 4.001 8 C -0.495 4.495 9 H 0.037 0.963 10 C -0.138 4.138 11 N -0.570 5.570 12 Si 0.760 3.240 13 H -0.180 1.180 14 H -0.191 1.191 15 H -0.247 1.247 16 C -0.247 4.247 17 C -0.209 4.209 18 C -0.040 4.040 19 H 0.075 0.925 20 C -0.188 4.188 21 C -0.040 4.040 22 O -0.331 6.331 23 C -0.070 4.070 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.005 17.644 1.059 17.704 hybrid contribution 0.453 0.492 -0.631 0.919 sum -0.552 18.136 0.429 18.149 Atomic orbital electron populations 1.22744 0.81553 1.02201 1.00119 1.88291 1.19433 1.27734 1.95155 1.22848 0.93492 0.85233 1.00026 1.22369 0.94648 0.97476 0.93192 1.61814 1.21615 1.37794 1.01209 1.21624 0.88856 0.94653 0.97365 1.19295 0.93289 0.94833 0.92681 1.20046 1.24801 1.12969 0.91643 0.96337 1.25205 0.94191 0.94310 1.00098 1.70146 1.24824 1.42122 1.19883 0.86305 0.80909 0.77462 0.79341 1.18022 1.19078 1.24728 1.23156 0.94098 0.99936 1.07536 1.22735 1.04270 0.99859 0.94006 1.21997 0.98366 0.89953 0.93726 0.92498 1.21829 0.94905 1.00991 1.01094 1.23280 0.84042 0.96604 1.00108 1.87944 1.28539 1.31903 1.84725 1.22902 1.02670 0.82716 0.98737 0.92710 0.93887 0.91306 0.92145 0.91995 0.91563 0.91001 0.94176 0.94118 0.93485 0.90888 0.89425 0.88746 0.91434 0.91122 0.90583 0.94785 0.91513 0.90992 0.93007 0.92962 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 11.01 113.37 1.25 2.18 16 2 O -0.39 -15.56 10.36 -148.98 -1.54 -17.11 16 3 C 0.06 1.88 4.90 71.98 0.35 2.23 16 4 C 0.05 1.76 4.64 86.30 0.40 2.16 16 5 N -0.50 -20.44 3.57 -871.00 -3.11 -23.55 16 6 C 0.10 4.49 3.42 86.30 0.30 4.79 16 7 C 0.00 0.02 1.12 -52.93 -0.06 -0.04 16 8 C -0.46 -27.25 9.20 25.60 0.24 -27.02 16 9 H 0.02 1.25 8.06 -2.91 -0.02 1.22 16 10 C 0.06 3.65 5.28 84.66 0.45 4.10 16 11 N -0.93 -59.67 13.96 21.45 0.30 -59.37 16 12 Si 0.93 47.59 24.10 68.60 1.65 49.24 16 13 H -0.25 -12.13 5.00 99.48 0.50 -11.63 16 14 H -0.27 -13.13 7.02 99.48 0.70 -12.43 16 15 H -0.32 -16.58 7.11 99.48 0.71 -15.87 16 16 C -0.21 -9.06 9.96 30.62 0.30 -8.75 16 17 C -0.17 -7.21 8.43 30.62 0.26 -6.95 16 18 C 0.07 2.39 2.34 44.92 0.10 2.50 16 19 H 0.06 2.22 5.83 -2.39 -0.01 2.21 16 20 C -0.13 -4.31 9.24 71.98 0.66 -3.64 16 21 C 0.04 0.96 4.44 71.98 0.32 1.28 16 22 O -0.41 -11.30 8.30 -148.98 -1.24 -12.53 16 23 C 0.03 0.47 10.99 113.37 1.25 1.71 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.68 4.27 -2.38 -0.01 1.67 16 29 H 0.07 2.57 5.58 -2.39 -0.01 2.56 16 30 H 0.07 2.12 4.74 -2.39 -0.01 2.10 16 31 H 0.04 1.63 7.13 -2.39 -0.02 1.61 16 32 H 0.04 1.91 2.64 -2.39 -0.01 1.90 16 33 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 34 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 36 H 0.09 3.42 7.72 -2.39 -0.02 3.40 16 37 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.07 2.19 4.64 -2.39 -0.01 2.18 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.65 4.82 -2.39 -0.01 1.64 16 43 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.05 0.81 8.12 -2.38 -0.02 0.79 16 45 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -72.48 333.94 2.62 -69.86 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.74 Total: 18.91 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 5.82 Total: -25.44 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -2.81 Total: -82.93 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -2.78 Total: -29.64 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.65 Total: 49.24 kcal Total: -72.48 2.62 -69.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.892 kcal (2) G-P(sol) polarization free energy of solvation -72.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds