Wall clock time and date at job start Mon Mar 30 2020 06:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99888 * 2 1 4 4 H 1.48499 * 109.46930 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47010 * 300.00768 * 3 2 1 6 6 H 1.48504 * 109.46899 * 60.00568 * 3 2 1 7 7 C 1.37873 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99862 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00055 * 359.97438 * 7 2 1 10 10 O 1.42095 * 106.40275 * 66.46181 * 9 7 2 11 11 O 1.42104 * 106.40094 * 293.54066 * 9 7 2 12 12 N 1.65606 * 107.21820 * 180.02562 * 9 7 2 13 13 C 1.39680 * 119.99925 * 67.83310 * 12 9 7 14 14 C 1.38933 * 120.07248 * 324.55043 * 13 12 9 15 15 C 1.38079 * 119.92094 * 180.02562 * 14 13 12 16 16 C 1.38303 * 120.07919 * 359.72216 * 15 14 13 17 17 C 1.38270 * 120.14651 * 0.55550 * 16 15 14 18 18 C 1.38129 * 120.07218 * 359.44179 * 17 16 15 19 19 N 1.48005 * 120.03713 * 180.29618 * 18 17 16 20 20 O 1.21796 * 120.00032 * 0.02562 * 19 18 17 21 21 O 1.21798 * 119.99842 * 180.02562 * 19 18 17 22 22 H 0.97001 * 119.99841 * 359.97438 * 1 2 3 23 23 H 0.96992 * 119.99602 * 247.83254 * 12 9 7 24 24 H 1.08001 * 120.04035 * 359.97438 * 14 13 12 25 25 H 1.08001 * 119.95720 * 179.97438 * 15 14 13 26 26 H 1.08000 * 119.93390 * 180.27691 * 16 15 14 27 27 H 1.07994 * 119.96207 * 179.72415 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4519 -2.7955 1.2495 12 7 2.2484 -3.9354 -0.0005 13 6 3.0578 -4.1379 1.1197 14 6 3.4946 -3.0522 1.8685 15 6 4.2950 -3.2560 2.9750 16 6 4.6572 -4.5394 3.3416 17 6 4.2289 -5.6218 2.5953 18 6 3.4280 -5.4251 1.4873 19 7 2.9646 -6.5846 0.6928 20 8 3.2891 -7.7132 1.0162 21 8 2.2588 -6.4103 -0.2844 22 1 -0.4850 0.8401 0.0004 23 1 2.3452 -4.5065 -0.7785 24 1 3.2092 -2.0500 1.5849 25 1 4.6352 -2.4124 3.5573 26 1 5.2796 -4.6964 4.2102 27 1 4.5172 -6.6224 2.8817 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090136460.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:30 Heat of formation + Delta-G solvation = -63.643079 kcal Electronic energy + Delta-G solvation = -19048.975242 eV Core-core repulsion = 15708.883416 eV Total energy + Delta-G solvation = -3340.091826 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.98766 -39.40516 -36.49614 -35.56256 -34.73064 -34.28039 -33.36398 -31.79108 -29.32348 -26.53279 -26.10724 -22.89510 -22.32290 -19.26811 -19.08235 -18.45206 -17.94129 -17.49050 -17.14854 -16.51071 -15.55847 -15.00978 -14.78854 -14.30990 -14.17776 -13.61624 -13.23951 -12.49931 -12.26839 -12.04262 -11.41890 -11.39179 -11.22735 -11.10351 -11.01438 -10.91132 -10.74516 -10.58698 -10.50008 -10.37902 -9.47397 -9.46663 -9.08614 -8.34260 -6.94468 -5.61889 0.09718 1.14099 1.56737 1.66609 1.86824 2.91321 3.00516 3.05778 3.45162 3.81712 4.13030 4.39801 4.48204 4.72157 4.95635 5.04257 5.18963 5.45496 5.57856 5.91978 5.92334 6.04578 6.26418 6.33510 6.47421 6.78036 7.06283 7.41785 7.64484 7.91255 8.61292 10.00102 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.025342 B = 0.007573 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.605579 B = 3696.610195 C = 4482.903316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.134 3.866 3 Si 0.925 3.075 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.269 1.269 7 C -1.025 5.025 8 H 0.112 0.888 9 S 2.693 3.307 10 O -0.983 6.983 11 O -0.986 6.986 12 N -1.057 6.057 13 C 0.275 3.725 14 C -0.177 4.177 15 C -0.033 4.033 16 C -0.155 4.155 17 C -0.037 4.037 18 C -0.094 4.094 19 N 0.045 4.955 20 O -0.172 6.172 21 O -0.177 6.177 22 H 0.295 0.705 23 H 0.428 0.572 24 H 0.183 0.817 25 H 0.146 0.854 26 H 0.143 0.857 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.685 -3.847 6.014 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.086 4.086 3 Si 0.748 3.252 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.194 1.194 7 C -1.158 5.158 8 H 0.130 0.870 9 S 2.793 3.207 10 O -0.973 6.973 11 O -0.976 6.976 12 N -0.802 5.802 13 C 0.170 3.830 14 C -0.198 4.198 15 C -0.052 4.052 16 C -0.175 4.175 17 C -0.056 4.056 18 C -0.183 4.183 19 N 0.559 4.441 20 O -0.386 6.386 21 O -0.386 6.386 22 H 0.105 0.895 23 H 0.269 0.731 24 H 0.200 0.800 25 H 0.163 0.837 26 H 0.161 0.839 27 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.636 -3.295 6.366 12.010 hybrid contribution 0.769 0.552 -0.628 1.136 sum 10.405 -2.743 5.738 12.195 Atomic orbital electron populations 1.69889 1.06887 1.31216 1.38389 1.24776 0.94546 1.00951 0.88308 0.86049 0.80343 0.79903 0.78892 1.18358 1.19368 1.19365 1.30525 1.06094 1.11047 1.68170 0.87002 1.01477 0.72308 0.73400 0.73484 1.93420 1.71867 1.86950 1.45092 1.93421 1.71819 1.87014 1.45335 1.54974 1.51620 1.52678 1.20920 1.17284 0.87801 0.90541 0.87361 1.22213 0.99744 1.00498 0.97364 1.21435 0.92456 0.97713 0.93607 1.21078 1.03530 0.91541 1.01358 1.20834 0.92690 1.01566 0.90552 1.21023 1.12732 0.84421 1.00145 1.43432 0.98360 1.02176 1.00155 1.94470 1.60740 1.09247 1.74155 1.94424 1.34752 1.91695 1.17746 0.89451 0.73109 0.79996 0.83667 0.83902 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.95 13.19 55.43 0.73 -22.21 15 2 C 0.13 3.42 5.46 -17.82 -0.10 3.32 15 3 Si 0.92 18.63 29.54 -169.99 -5.02 13.61 15 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 5 H -0.27 -5.34 7.11 56.52 0.40 -4.93 15 6 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 7 C -1.03 -25.50 7.65 30.60 0.23 -25.27 15 8 H 0.11 2.44 6.76 -52.48 -0.35 2.09 15 9 S 2.69 69.15 4.66 -107.50 -0.50 68.65 15 10 O -0.98 -28.21 18.02 -57.17 -1.03 -29.24 15 11 O -0.99 -27.70 17.50 -57.17 -1.00 -28.70 15 12 N -1.06 -22.05 5.07 32.41 0.16 -21.89 15 13 C 0.27 5.10 6.14 -83.79 -0.51 4.58 15 14 C -0.18 -2.94 9.05 -39.38 -0.36 -3.29 15 15 C -0.03 -0.40 10.04 -39.62 -0.40 -0.80 15 16 C -0.16 -1.64 10.04 -39.55 -0.40 -2.04 15 17 C -0.04 -0.47 9.55 -39.61 -0.38 -0.85 15 18 C -0.09 -1.58 6.87 -79.76 -0.55 -2.13 15 19 N 0.05 0.83 4.45 34.06 0.15 0.98 15 20 O -0.17 -2.99 18.45 -29.46 -0.54 -3.53 15 21 O -0.18 -3.49 15.98 -29.46 -0.47 -3.96 15 22 H 0.29 7.22 8.31 -40.82 -0.34 6.88 15 23 H 0.43 8.34 6.52 -34.47 -0.22 8.11 15 24 H 0.18 3.26 4.41 -52.49 -0.23 3.03 15 25 H 0.15 1.25 8.06 -52.49 -0.42 0.83 15 26 H 0.14 0.96 8.06 -52.49 -0.42 0.54 15 27 H 0.15 1.55 7.61 -52.49 -0.40 1.15 15 LS Contribution 262.70 15.07 3.96 3.96 Total: -1.00 -33.25 262.70 -7.21 -40.46 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -1.19 Total: 8.34 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -2.45 Total: -26.46 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 1.05 Total: -43.12 kcal Atomic # 8 Polarization: -62.39 SS G_CDS: -3.05 Total: -65.43 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Atomic # 16 Polarization: 69.15 SS G_CDS: -0.50 Total: 68.65 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.25 -7.21 -40.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090136460.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.186 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds