Wall clock time and date at job start Mon Mar 30 2020 06:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99888 * 2 1 4 4 H 1.48499 * 109.46930 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47010 * 300.00768 * 3 2 1 6 6 H 1.48504 * 109.46899 * 60.00568 * 3 2 1 7 7 C 1.37873 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99862 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00055 * 359.97438 * 7 2 1 10 10 O 1.42095 * 106.40275 * 66.46181 * 9 7 2 11 11 O 1.42104 * 106.40094 * 293.54066 * 9 7 2 12 12 N 1.65606 * 107.21820 * 180.02562 * 9 7 2 13 13 C 1.39680 * 119.99925 * 67.83310 * 12 9 7 14 14 C 1.38933 * 120.07248 * 324.55043 * 13 12 9 15 15 C 1.38079 * 119.92094 * 180.02562 * 14 13 12 16 16 C 1.38303 * 120.07919 * 359.72216 * 15 14 13 17 17 C 1.38270 * 120.14651 * 0.55550 * 16 15 14 18 18 C 1.38129 * 120.07218 * 359.44179 * 17 16 15 19 19 N 1.48005 * 120.03713 * 180.29618 * 18 17 16 20 20 O 1.21796 * 120.00032 * 0.02562 * 19 18 17 21 21 O 1.21798 * 119.99842 * 180.02562 * 19 18 17 22 22 H 0.97001 * 119.99841 * 359.97438 * 1 2 3 23 23 H 0.96992 * 119.99602 * 247.83254 * 12 9 7 24 24 H 1.08001 * 120.04035 * 359.97438 * 14 13 12 25 25 H 1.08001 * 119.95720 * 179.97438 * 15 14 13 26 26 H 1.08000 * 119.93390 * 180.27691 * 16 15 14 27 27 H 1.07994 * 119.96207 * 179.72415 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4519 -2.7955 1.2495 12 7 2.2484 -3.9354 -0.0005 13 6 3.0578 -4.1379 1.1197 14 6 3.4946 -3.0522 1.8685 15 6 4.2950 -3.2560 2.9750 16 6 4.6572 -4.5394 3.3416 17 6 4.2289 -5.6218 2.5953 18 6 3.4280 -5.4251 1.4873 19 7 2.9646 -6.5846 0.6928 20 8 3.2891 -7.7132 1.0162 21 8 2.2588 -6.4103 -0.2844 22 1 -0.4850 0.8401 0.0004 23 1 2.3452 -4.5065 -0.7785 24 1 3.2092 -2.0500 1.5849 25 1 4.6352 -2.4124 3.5573 26 1 5.2796 -4.6964 4.2102 27 1 4.5172 -6.6224 2.8817 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090136460.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:30 Heat of formation + Delta-G solvation = -89.370770 kcal Electronic energy + Delta-G solvation = -19050.090878 eV Core-core repulsion = 15708.883416 eV Total energy + Delta-G solvation = -3341.207462 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.034 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.35199 -40.60817 -37.88618 -37.65827 -36.40580 -36.11694 -35.29040 -32.96561 -30.57664 -28.47502 -27.41095 -24.14697 -23.55578 -21.09511 -20.48483 -19.84212 -19.63518 -18.82273 -18.55182 -18.40994 -17.24157 -16.29269 -16.21863 -15.86774 -15.84644 -15.15093 -14.53791 -14.07152 -13.71430 -13.33983 -13.09830 -13.05458 -12.76119 -12.71686 -12.68971 -12.55951 -12.39356 -12.35469 -12.24751 -11.82746 -11.30307 -10.99571 -10.58893 -9.63561 -8.84121 -7.61751 -1.18796 -0.11779 0.10978 0.31522 0.41081 1.35607 1.37334 1.55918 2.15595 2.36970 2.48359 2.53942 3.29055 3.45219 3.69258 3.78060 4.03776 4.15307 4.21003 4.46879 4.79831 4.86185 5.02060 5.16956 5.19198 5.25967 5.62227 5.77124 5.86594 6.49793 6.66130 8.13865 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.025342 B = 0.007573 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.605579 B = 3696.610195 C = 4482.903316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.073 3.927 3 Si 1.000 3.000 4 H -0.237 1.237 5 H -0.266 1.266 6 H -0.255 1.255 7 C -1.026 5.026 8 H 0.139 0.861 9 S 2.695 3.305 10 O -1.031 7.031 11 O -1.023 7.023 12 N -1.057 6.057 13 C 0.231 3.769 14 C -0.204 4.204 15 C -0.015 4.015 16 C -0.125 4.125 17 C -0.030 4.030 18 C -0.110 4.110 19 N 0.043 4.957 20 O -0.135 6.135 21 O -0.245 6.245 22 H 0.302 0.698 23 H 0.429 0.571 24 H 0.164 0.836 25 H 0.189 0.811 26 H 0.201 0.799 27 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.361 -3.251 8.848 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.142 4.142 3 Si 0.817 3.183 4 H -0.159 1.159 5 H -0.191 1.191 6 H -0.179 1.179 7 C -1.161 5.161 8 H 0.157 0.843 9 S 2.798 3.202 10 O -1.021 7.021 11 O -1.013 7.013 12 N -0.806 5.806 13 C 0.129 3.871 14 C -0.225 4.225 15 C -0.033 4.033 16 C -0.144 4.144 17 C -0.050 4.050 18 C -0.199 4.199 19 N 0.553 4.447 20 O -0.361 6.361 21 O -0.437 6.437 22 H 0.113 0.887 23 H 0.270 0.730 24 H 0.181 0.819 25 H 0.207 0.793 26 H 0.218 0.782 27 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 13.237 -2.668 9.118 16.293 hybrid contribution -0.192 0.192 -1.285 1.313 sum 13.044 -2.477 7.833 15.416 Atomic orbital electron populations 1.70003 1.09105 1.32811 1.40100 1.26123 0.95365 1.05486 0.87178 0.84957 0.79806 0.74190 0.79340 1.15920 1.19099 1.17936 1.30721 1.07335 1.10269 1.67728 0.84343 1.01010 0.72800 0.74332 0.72031 1.93344 1.74134 1.87953 1.46718 1.93350 1.73739 1.87851 1.46380 1.54251 1.52109 1.51800 1.22424 1.17661 0.89539 0.92256 0.87634 1.22275 1.01763 0.99080 0.99401 1.22015 0.89613 1.00231 0.91454 1.21761 1.01531 0.89703 1.01427 1.21431 0.90853 1.04088 0.88612 1.21355 1.14170 0.83034 1.01372 1.43735 0.98089 1.02734 1.00126 1.94405 1.58855 1.09764 1.73091 1.94445 1.37602 1.91950 1.19736 0.88718 0.72970 0.81873 0.79331 0.78195 0.80084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.50 13.19 21.45 0.28 -50.21 15 2 C 0.07 3.74 5.46 84.65 0.46 4.20 15 3 Si 1.00 37.20 29.54 68.60 2.03 39.23 15 4 H -0.24 -7.84 7.11 99.48 0.71 -7.13 15 5 H -0.27 -9.72 7.11 99.48 0.71 -9.01 15 6 H -0.26 -8.87 7.11 99.48 0.71 -8.16 15 7 C -1.03 -52.02 7.65 67.73 0.52 -51.51 15 8 H 0.14 6.02 6.76 -2.91 -0.02 6.00 15 9 S 2.69 146.41 4.66 -56.49 -0.26 146.14 15 10 O -1.03 -63.42 18.02 -128.00 -2.31 -65.73 15 11 O -1.02 -60.75 17.50 -128.00 -2.24 -62.99 15 12 N -1.06 -46.77 5.07 -51.37 -0.26 -47.03 15 13 C 0.23 8.65 6.14 38.21 0.23 8.89 15 14 C -0.20 -6.49 9.05 22.40 0.20 -6.29 15 15 C -0.01 -0.28 10.04 22.25 0.22 -0.06 15 16 C -0.13 -1.85 10.04 22.29 0.22 -1.63 15 17 C -0.03 -0.64 9.55 22.25 0.21 -0.43 15 18 C -0.11 -3.59 6.87 36.51 0.25 -3.34 15 19 N 0.04 1.59 4.45 -46.17 -0.21 1.38 15 20 O -0.13 -4.47 18.45 18.89 0.35 -4.13 15 21 O -0.24 -10.27 15.98 18.89 0.30 -9.97 15 22 H 0.30 15.29 8.31 -92.71 -0.77 14.52 15 23 H 0.43 18.27 6.52 -96.75 -0.63 17.64 15 24 H 0.16 5.80 4.41 -2.91 -0.01 5.78 15 25 H 0.19 2.01 8.06 -2.91 -0.02 1.99 15 26 H 0.20 0.86 8.06 -2.91 -0.02 0.84 15 27 H 0.18 2.72 7.61 -2.91 -0.02 2.69 15 Total: -1.00 -78.93 262.70 0.63 -78.30 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.62 Total: 25.17 kcal Atomic # 6 Polarization: -52.49 SS G_CDS: 2.33 Total: -50.17 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -0.18 Total: -95.86 kcal Atomic # 8 Polarization: -138.91 SS G_CDS: -3.90 Total: -142.81 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 16 Polarization: 146.41 SS G_CDS: -0.26 Total: 146.14 kcal Total: -78.93 0.63 -78.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090136460.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.071 kcal (2) G-P(sol) polarization free energy of solvation -78.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds