Wall clock time and date at job start Mon Mar 30 2020 06:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35954 * 117.00326 * 2 1 4 4 C 1.38481 * 120.00252 * 0.25355 * 3 2 1 5 5 C 1.38599 * 120.34202 * 180.25800 * 4 3 2 6 6 Cl 1.73601 * 119.81780 * 179.76523 * 5 4 3 7 7 C 1.37962 * 120.35934 * 359.73571 * 5 4 3 8 8 C 1.39745 * 120.00326 * 0.02562 * 7 5 4 9 9 C 1.47403 * 120.17164 * 180.02562 * 8 7 5 10 10 O 1.21517 * 120.00143 * 179.97438 * 9 8 7 11 11 O 1.34762 * 120.00423 * 359.97016 * 9 8 7 12 12 C 1.39302 * 120.00569 * 179.97438 * 3 2 1 13 13 O 1.35563 * 120.17482 * 0.02562 * 12 3 2 14 14 C 1.34777 * 116.99785 * 269.71761 * 13 12 3 15 15 H 1.08002 * 120.00500 * 0.02562 * 14 13 12 16 16 C 1.38687 * 119.99776 * 179.72535 * 14 13 12 17 17 N 1.31534 * 120.00117 * 0.27802 * 16 14 13 18 18 Si 1.86798 * 120.00288 * 180.27937 * 16 14 13 19 19 H 1.48500 * 109.47353 * 89.99701 * 18 16 14 20 20 H 1.48495 * 109.47568 * 210.00332 * 18 16 14 21 21 H 1.48504 * 109.46680 * 329.99949 * 18 16 14 22 22 H 1.08994 * 109.47110 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47040 * 300.00796 * 1 2 3 24 24 H 1.09005 * 109.46953 * 59.99844 * 1 2 3 25 25 H 1.07990 * 119.82609 * 0.02562 * 4 3 2 26 26 H 1.07995 * 119.99697 * 180.02562 * 7 5 4 27 27 H 0.96687 * 117.00766 * 180.02562 * 11 9 8 28 28 H 0.96996 * 120.00405 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2922 2.3728 0.0053 5 6 1.9141 3.6114 0.0000 6 17 0.9555 5.0587 0.0005 7 6 3.2909 3.7003 -0.0052 8 6 4.0662 2.5377 -0.0056 9 6 5.5374 2.6284 -0.0106 10 8 6.2087 1.6155 -0.0105 11 8 6.1382 3.8347 -0.0153 12 6 3.4374 1.2843 0.0005 13 8 4.1792 0.1496 0.0005 14 6 4.5185 -0.3595 1.2014 15 1 4.1997 0.1348 2.1072 16 6 5.2719 -1.5217 1.2740 17 7 5.6599 -2.1240 0.1709 18 14 5.7356 -2.2317 2.9384 19 1 4.6836 -3.1813 3.3820 20 1 7.0327 -2.9462 2.8278 21 1 5.8592 -1.1319 3.9286 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.2139 2.3131 0.0099 26 1 3.7693 4.6685 -0.0090 27 1 7.1051 3.8437 -0.0189 28 1 6.1870 -2.9366 0.2217 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132374371.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:08 Heat of formation + Delta-G solvation = -147.153735 kcal Electronic energy + Delta-G solvation = -18820.172823 eV Core-core repulsion = 15442.123246 eV Total energy + Delta-G solvation = -3378.049577 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 272.033 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.78224 -40.60575 -38.90143 -38.37865 -37.01971 -36.81492 -33.99381 -31.99112 -30.72775 -28.20724 -27.02113 -25.48731 -23.44954 -22.21334 -20.07537 -19.56632 -18.70997 -18.21092 -17.52561 -17.06308 -16.79511 -16.44242 -16.41046 -15.97268 -15.42601 -15.09371 -14.55743 -14.19945 -13.84587 -13.66650 -13.43535 -12.93976 -12.71233 -12.46053 -12.44536 -12.22373 -12.16425 -12.00370 -11.84764 -11.58927 -11.34724 -10.28103 -9.97417 -9.13283 -8.15026 -5.87522 -0.50429 0.09076 0.95017 1.35503 1.43449 1.51068 1.54584 1.93164 2.26997 2.50530 2.55924 3.18807 3.47656 3.77434 3.92864 3.99159 4.23662 4.40835 4.42426 4.60221 4.72142 4.82081 4.91055 5.13545 5.14331 5.37657 5.68771 6.18069 6.38545 7.12743 7.25588 8.04843 9.08735 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.018464 B = 0.007436 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.126282 B = 3764.608249 C = 4823.293101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.323 6.323 3 C 0.091 3.909 4 C -0.146 4.146 5 C -0.029 4.029 6 Cl -0.039 7.039 7 C -0.069 4.069 8 C -0.133 4.133 9 C 0.515 3.485 10 O -0.503 6.503 11 O -0.502 6.502 12 C 0.124 3.876 13 O -0.247 6.247 14 C -0.349 4.349 15 H 0.062 0.938 16 C -0.029 4.029 17 N -0.930 5.930 18 Si 1.001 2.999 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.263 1.263 22 H 0.113 0.887 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.177 0.823 26 H 0.172 0.828 27 H 0.429 0.571 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.443 13.765 1.283 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.237 6.237 3 C 0.044 3.956 4 C -0.165 4.165 5 C -0.055 4.055 6 Cl -0.010 7.010 7 C -0.088 4.088 8 C -0.135 4.135 9 C 0.357 3.643 10 O -0.390 6.390 11 O -0.317 6.317 12 C 0.077 3.923 13 O -0.159 6.159 14 C -0.425 4.425 15 H 0.080 0.920 16 C -0.222 4.222 17 N -0.573 5.573 18 Si 0.822 3.178 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.187 1.187 22 H 0.131 0.869 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.194 0.806 26 H 0.189 0.811 27 H 0.290 0.710 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.530 13.162 1.071 16.890 hybrid contribution 0.824 -0.376 0.501 1.035 sum -9.706 12.786 1.572 16.130 Atomic orbital electron populations 1.23485 0.76220 1.05742 1.02813 1.86340 1.23620 1.25533 1.88192 1.19396 0.90906 0.85937 0.99321 1.21373 1.01922 0.88946 1.04242 1.20349 0.91246 0.88107 1.05845 1.98361 1.70811 1.34881 1.96941 1.21208 0.91516 0.98121 0.97946 1.19311 0.90415 0.93272 1.10522 1.20597 0.88964 0.81193 0.73515 1.91141 1.66152 1.37750 1.44005 1.84454 1.29856 1.31217 1.86171 1.19135 0.88821 0.88052 0.96327 1.83799 1.67636 1.35076 1.29423 1.20919 1.32870 1.07565 0.81164 0.91976 1.26085 0.97144 0.96653 1.02362 1.70186 1.38767 1.19455 1.28938 0.84852 0.78026 0.78508 0.76382 1.18923 1.20258 1.18730 0.86902 0.90776 0.90657 0.80580 0.81089 0.70962 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.39 15 2 O -0.32 -13.11 10.28 -79.16 -0.81 -13.93 15 3 C 0.09 3.64 6.70 22.58 0.15 3.79 15 4 C -0.15 -4.21 8.81 22.41 0.20 -4.01 15 5 C -0.03 -0.78 6.31 22.29 0.14 -0.64 15 6 Cl -0.04 -0.81 28.94 -2.72 -0.08 -0.89 15 7 C -0.07 -2.11 9.38 22.57 0.21 -1.89 15 8 C -0.13 -5.46 5.89 -20.01 -0.12 -5.58 15 9 C 0.51 21.68 8.26 70.24 0.58 22.27 15 10 O -0.50 -27.14 15.16 26.78 0.41 -26.73 15 11 O -0.50 -14.57 12.68 -56.73 -0.72 -15.29 15 12 C 0.12 6.02 5.62 23.01 0.13 6.14 15 13 O -0.25 -15.20 7.97 7.17 0.06 -15.14 15 14 C -0.35 -21.55 8.79 67.93 0.60 -20.95 15 15 H 0.06 3.68 7.76 -2.91 -0.02 3.66 15 16 C -0.03 -1.76 5.49 84.84 0.47 -1.29 15 17 N -0.93 -61.78 13.67 21.62 0.30 -61.49 15 18 Si 1.00 47.36 29.55 68.60 2.03 49.38 15 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 15 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 15 21 H -0.26 -11.75 7.11 99.48 0.71 -11.05 15 22 H 0.11 2.39 8.14 -2.39 -0.02 2.37 15 23 H 0.07 1.45 7.64 -2.39 -0.02 1.43 15 24 H 0.07 1.45 7.67 -2.38 -0.02 1.43 15 25 H 0.18 3.67 6.27 -2.92 -0.02 3.66 15 26 H 0.17 4.21 7.61 -2.91 -0.02 4.18 15 27 H 0.43 8.47 9.11 -74.07 -0.67 7.80 15 28 H 0.26 16.05 8.31 -92.71 -0.77 15.28 15 Total: -1.00 -84.36 277.12 5.20 -79.16 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 0.56 Total: 5.71 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 3.47 Total: -0.78 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.30 Total: -61.49 kcal Atomic # 8 Polarization: -70.03 SS G_CDS: -1.07 Total: -71.10 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -84.36 5.20 -79.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132374371.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.998 kcal (2) G-P(sol) polarization free energy of solvation -84.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds