Wall clock time and date at job start Mon Mar 30 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 113.99986 * 2 1 4 4 C 1.52997 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47381 * 184.67466 * 4 3 2 6 6 N 1.46895 * 109.46995 * 64.66901 * 4 3 2 7 7 C 1.46906 * 110.99868 * 85.00195 * 6 4 3 8 8 C 1.53003 * 109.47176 * 180.02562 * 7 6 4 9 9 C 1.52993 * 109.47048 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46998 * 179.97438 * 9 8 7 11 11 H 1.07994 * 119.99994 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99955 * 179.97438 * 10 9 8 13 13 N 1.31527 * 119.99933 * 0.02562 * 12 10 9 14 14 Si 1.86789 * 120.00141 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47388 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47397 * 120.00040 * 14 12 10 17 17 H 1.48506 * 109.47335 * 239.99951 * 14 12 10 18 18 C 1.53004 * 109.47139 * 304.67288 * 4 3 2 19 19 C 1.53178 * 109.54540 * 185.03899 * 18 4 3 20 20 C 1.53083 * 109.16440 * 176.84549 * 19 18 4 21 21 O 1.42895 * 109.41669 * 302.39131 * 20 19 18 22 22 C 1.42901 * 114.09952 * 61.16013 * 21 20 19 23 23 C 1.53099 * 109.41279 * 298.84023 * 22 21 20 24 24 H 1.08999 * 109.46841 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46765 * 299.99357 * 1 2 3 26 26 H 1.08993 * 109.46822 * 59.99722 * 1 2 3 27 27 H 1.09002 * 109.46777 * 60.00198 * 3 2 1 28 28 H 1.09000 * 109.46968 * 300.00387 * 3 2 1 29 29 H 1.00900 * 111.00302 * 208.95421 * 6 4 3 30 30 H 1.09003 * 109.46695 * 299.99752 * 7 6 4 31 31 H 1.08994 * 109.46875 * 59.99710 * 7 6 4 32 32 H 1.09009 * 109.46839 * 299.99842 * 8 7 6 33 33 H 1.08995 * 109.47342 * 59.99514 * 8 7 6 34 34 H 1.08992 * 109.47287 * 299.99986 * 9 8 7 35 35 H 1.09007 * 109.47413 * 60.00100 * 9 8 7 36 36 H 0.96994 * 119.99684 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.61649 * 64.81438 * 18 4 3 38 38 H 1.09000 * 109.51946 * 56.93805 * 19 18 4 39 39 H 1.09007 * 109.56986 * 296.78281 * 19 18 4 40 40 H 1.09003 * 109.47965 * 62.37396 * 20 19 18 41 41 H 1.09003 * 109.47961 * 182.40793 * 20 19 18 42 42 H 1.09005 * 109.48210 * 178.86431 * 22 21 20 43 43 H 1.08997 * 109.48573 * 58.82531 * 22 21 20 44 44 H 1.08995 * 109.52438 * 297.70567 * 23 22 21 45 45 H 1.08994 * 109.52254 * 177.51509 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 1 3.9786 2.1770 0.0831 6 7 3.9763 0.5557 -1.2527 7 6 4.1178 1.5533 -2.3218 8 6 4.5767 0.8618 -3.6072 9 6 4.7235 1.9007 -4.7207 10 6 5.1760 1.2196 -5.9866 11 1 5.3419 0.1526 -5.9961 12 6 5.3773 1.9588 -7.1330 13 7 5.1748 3.2583 -7.1215 14 14 5.9375 1.1146 -8.7022 15 1 6.0931 -0.3410 -8.4529 16 1 4.9261 1.3295 -9.7682 17 1 7.2395 1.6844 -9.1332 18 6 3.9796 0.3262 1.1854 19 6 5.5095 0.3075 1.2600 20 6 5.9427 -0.4879 2.4942 21 8 5.3661 0.0976 3.6632 22 6 3.9372 0.0997 3.6706 23 6 3.4233 0.9189 2.4837 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6887 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 4.8364 0.0456 -1.1179 30 1 3.1577 2.0397 -2.4941 31 1 4.8555 2.2995 -2.0269 32 1 5.5367 0.3750 -3.4350 33 1 3.8387 0.1157 -3.9018 34 1 3.7634 2.3871 -4.8926 35 1 5.4614 2.6471 -4.4263 36 1 5.3160 3.7782 -7.9281 37 1 3.6082 -0.6909 1.0603 38 1 5.8830 1.3287 1.3353 39 1 5.9131 -0.1629 0.3633 40 1 5.6035 -1.5195 2.3993 41 1 7.0295 -0.4685 2.5761 42 1 3.5791 0.5426 4.6001 43 1 3.5717 -0.9241 3.5912 44 1 3.7547 1.9524 2.5836 45 1 2.3341 0.8851 2.4621 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187950477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:13 Heat of formation + Delta-G solvation = -116.986774 kcal Electronic energy + Delta-G solvation = -21580.165110 eV Core-core repulsion = 18403.765546 eV Total energy + Delta-G solvation = -3176.399564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.94147 -38.05794 -36.40226 -34.44899 -32.90859 -31.35970 -31.02765 -28.84747 -26.61205 -25.69026 -24.92955 -23.55228 -22.48383 -20.97931 -20.35996 -19.67452 -16.82142 -16.50431 -16.21576 -16.16324 -15.65939 -15.44903 -14.88881 -14.78777 -14.63019 -14.35184 -13.95335 -13.75379 -13.25486 -12.86796 -12.49168 -12.37962 -12.11697 -11.70428 -11.64117 -11.51000 -11.43964 -11.38840 -10.90480 -10.76433 -10.65459 -10.53510 -10.37827 -10.34010 -9.69577 -9.66332 -9.55109 -9.28632 -9.01224 -8.32710 -8.09637 -5.97818 -3.99594 3.32584 3.39887 3.44720 3.68660 3.84348 4.29466 4.49253 4.49364 4.58699 4.73391 4.82766 5.01431 5.14670 5.18476 5.28618 5.30537 5.38059 5.40305 5.41156 5.44802 5.49562 5.51134 5.63869 5.72153 5.72499 5.76784 5.85053 5.90466 5.93505 5.99569 6.28110 6.35514 6.75156 6.80502 7.00193 7.16760 7.20546 7.43600 7.67585 7.71462 7.86286 8.02991 8.46573 9.07924 9.64344 11.13713 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.003450 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.092925 B = 8113.940674 C = 8907.086578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.073 3.927 4 C 0.095 3.905 5 H 0.054 0.946 6 N -0.678 5.678 7 C 0.059 3.941 8 C -0.106 4.106 9 C 0.022 3.978 10 C -0.517 4.517 11 H 0.056 0.944 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.085 4.085 19 C -0.158 4.158 20 C 0.063 3.937 21 O -0.386 6.386 22 C 0.062 3.938 23 C -0.148 4.148 24 H 0.082 0.918 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.338 0.662 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.015 0.985 35 H 0.013 0.987 36 H 0.259 0.741 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.305 -5.258 21.760 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.005 4.005 4 C -0.015 4.015 5 H 0.072 0.928 6 N -0.310 5.310 7 C -0.070 4.070 8 C -0.144 4.144 9 C -0.016 4.016 10 C -0.555 4.555 11 H 0.074 0.926 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.104 4.104 19 C -0.195 4.195 20 C -0.013 4.013 21 O -0.305 6.305 22 C -0.015 4.015 23 C -0.186 4.186 24 H 0.100 0.900 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.158 0.842 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.705 -5.384 21.601 22.981 hybrid contribution 0.656 0.372 -1.039 1.284 sum -5.049 -5.012 20.562 21.758 Atomic orbital electron populations 1.22698 0.82144 1.02343 0.99464 1.87967 1.18417 1.27228 1.95174 1.22581 0.93473 0.85046 0.99383 1.21561 0.93480 0.96516 0.89934 0.92787 1.60543 1.37642 1.27823 1.05003 1.22187 0.99819 0.93028 0.91944 1.21604 0.99513 0.99694 0.93560 1.19069 0.96941 0.93656 0.91918 1.21303 1.44811 0.94279 0.95125 0.92610 1.25038 0.95701 0.94848 0.99015 1.69983 1.49794 1.05530 1.28370 0.86540 0.78270 0.79781 0.83442 1.19707 1.21036 1.21066 1.21245 0.94403 1.01269 0.93488 1.22330 0.96335 1.01861 0.99013 1.22546 0.98431 0.95682 0.84673 1.87912 1.19815 1.82014 1.40766 1.22560 0.81088 0.99314 0.98490 1.22247 1.01291 1.00314 0.94797 0.89980 0.94852 0.94226 0.93648 0.93242 0.84200 0.91756 0.95898 0.93712 0.92525 0.96658 0.96855 0.93130 0.89217 0.91151 0.90508 0.93066 0.88940 0.89147 0.93154 0.91314 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.37 -4.83 9.88 -35.23 -0.35 -5.18 16 3 C 0.07 0.88 5.06 37.16 0.19 1.07 16 4 C 0.10 1.18 2.03 -67.71 -0.14 1.05 16 5 H 0.05 0.68 7.80 -51.93 -0.40 0.27 16 6 N -0.68 -10.10 6.25 -106.73 -0.67 -10.77 16 7 C 0.06 1.03 5.48 -3.82 -0.02 1.01 16 8 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 11 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 12 C 0.05 1.59 5.46 -17.81 -0.10 1.50 16 13 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 14 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 18 C -0.09 -0.91 1.70 -90.43 -0.15 -1.06 16 19 C -0.16 -1.58 5.19 -26.60 -0.14 -1.72 16 20 C 0.06 0.60 6.84 37.20 0.25 0.85 16 21 O -0.39 -4.22 10.76 -35.23 -0.38 -4.60 16 22 C 0.06 0.55 6.84 37.21 0.25 0.81 16 23 C -0.15 -1.37 4.84 -26.59 -0.13 -1.50 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.46 6.72 -51.93 -0.35 0.11 16 28 H 0.05 0.66 7.36 -51.93 -0.38 0.28 16 29 H 0.34 4.75 6.53 -39.29 -0.26 4.50 16 30 H 0.06 1.16 7.36 -51.93 -0.38 0.78 16 31 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 32 H 0.04 0.92 8.14 -51.92 -0.42 0.50 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 37 H 0.09 1.07 7.74 -51.93 -0.40 0.67 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.77 6.55 -51.93 -0.34 0.43 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.67 6.67 -51.93 -0.35 0.32 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -31.55 351.66 -8.16 -39.71 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.32 Total: -1.05 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 0.54 Total: -13.77 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.07 Total: -37.36 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.73 Total: -9.77 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.55 -8.16 -39.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187950477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.280 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds