Wall clock time and date at job start Mon Mar 30 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 113.99986 * 2 1 4 4 C 1.52997 * 109.47272 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47381 * 184.67466 * 4 3 2 6 6 N 1.46895 * 109.46995 * 64.66901 * 4 3 2 7 7 C 1.46906 * 110.99868 * 85.00195 * 6 4 3 8 8 C 1.53003 * 109.47176 * 180.02562 * 7 6 4 9 9 C 1.52993 * 109.47048 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46998 * 179.97438 * 9 8 7 11 11 H 1.07994 * 119.99994 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99955 * 179.97438 * 10 9 8 13 13 N 1.31527 * 119.99933 * 0.02562 * 12 10 9 14 14 Si 1.86789 * 120.00141 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47388 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47397 * 120.00040 * 14 12 10 17 17 H 1.48506 * 109.47335 * 239.99951 * 14 12 10 18 18 C 1.53004 * 109.47139 * 304.67288 * 4 3 2 19 19 C 1.53178 * 109.54540 * 185.03899 * 18 4 3 20 20 C 1.53083 * 109.16440 * 176.84549 * 19 18 4 21 21 O 1.42895 * 109.41669 * 302.39131 * 20 19 18 22 22 C 1.42901 * 114.09952 * 61.16013 * 21 20 19 23 23 C 1.53099 * 109.41279 * 298.84023 * 22 21 20 24 24 H 1.08999 * 109.46841 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46765 * 299.99357 * 1 2 3 26 26 H 1.08993 * 109.46822 * 59.99722 * 1 2 3 27 27 H 1.09002 * 109.46777 * 60.00198 * 3 2 1 28 28 H 1.09000 * 109.46968 * 300.00387 * 3 2 1 29 29 H 1.00900 * 111.00302 * 208.95421 * 6 4 3 30 30 H 1.09003 * 109.46695 * 299.99752 * 7 6 4 31 31 H 1.08994 * 109.46875 * 59.99710 * 7 6 4 32 32 H 1.09009 * 109.46839 * 299.99842 * 8 7 6 33 33 H 1.08995 * 109.47342 * 59.99514 * 8 7 6 34 34 H 1.08992 * 109.47287 * 299.99986 * 9 8 7 35 35 H 1.09007 * 109.47413 * 60.00100 * 9 8 7 36 36 H 0.96994 * 119.99684 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.61649 * 64.81438 * 18 4 3 38 38 H 1.09000 * 109.51946 * 56.93805 * 19 18 4 39 39 H 1.09007 * 109.56986 * 296.78281 * 19 18 4 40 40 H 1.09003 * 109.47965 * 62.37396 * 20 19 18 41 41 H 1.09003 * 109.47961 * 182.40793 * 20 19 18 42 42 H 1.09005 * 109.48210 * 178.86431 * 22 21 20 43 43 H 1.08997 * 109.48573 * 58.82531 * 22 21 20 44 44 H 1.08995 * 109.52438 * 297.70567 * 23 22 21 45 45 H 1.08994 * 109.52254 * 177.51509 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 1 3.9786 2.1770 0.0831 6 7 3.9763 0.5557 -1.2527 7 6 4.1178 1.5533 -2.3218 8 6 4.5767 0.8618 -3.6072 9 6 4.7235 1.9007 -4.7207 10 6 5.1760 1.2196 -5.9866 11 1 5.3419 0.1526 -5.9961 12 6 5.3773 1.9588 -7.1330 13 7 5.1748 3.2583 -7.1215 14 14 5.9375 1.1146 -8.7022 15 1 6.0931 -0.3410 -8.4529 16 1 4.9261 1.3295 -9.7682 17 1 7.2395 1.6844 -9.1332 18 6 3.9796 0.3262 1.1854 19 6 5.5095 0.3075 1.2600 20 6 5.9427 -0.4879 2.4942 21 8 5.3661 0.0976 3.6632 22 6 3.9372 0.0997 3.6706 23 6 3.4233 0.9189 2.4837 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6887 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 4.8364 0.0456 -1.1179 30 1 3.1577 2.0397 -2.4941 31 1 4.8555 2.2995 -2.0269 32 1 5.5367 0.3750 -3.4350 33 1 3.8387 0.1157 -3.9018 34 1 3.7634 2.3871 -4.8926 35 1 5.4614 2.6471 -4.4263 36 1 5.3160 3.7782 -7.9281 37 1 3.6082 -0.6909 1.0603 38 1 5.8830 1.3287 1.3353 39 1 5.9131 -0.1629 0.3633 40 1 5.6035 -1.5195 2.3993 41 1 7.0295 -0.4685 2.5761 42 1 3.5791 0.5426 4.6001 43 1 3.5717 -0.9241 3.5912 44 1 3.7547 1.9524 2.5836 45 1 2.3341 0.8851 2.4621 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187950477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:13 Heat of formation + Delta-G solvation = -138.281538 kcal Electronic energy + Delta-G solvation = -21581.088520 eV Core-core repulsion = 18403.765546 eV Total energy + Delta-G solvation = -3177.322974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.79018 -38.97499 -37.56992 -35.98840 -34.58831 -32.64244 -32.09249 -30.06571 -27.97726 -26.91257 -25.92067 -24.50378 -24.01271 -22.02247 -21.92424 -20.71983 -18.50772 -17.69127 -17.41790 -16.95046 -16.58937 -16.57184 -16.36513 -15.88695 -15.68235 -15.59852 -15.33620 -14.58246 -14.40869 -14.19546 -14.04874 -13.59188 -13.29342 -13.07273 -13.00115 -12.72285 -12.62905 -12.40405 -12.35326 -12.27009 -12.13238 -11.74024 -11.54206 -11.45577 -11.33440 -11.15528 -11.02727 -10.56712 -10.47034 -10.41653 -9.32475 -8.21072 -6.32023 1.39540 1.39793 1.53634 2.40481 2.91350 3.00495 3.11996 3.20162 3.63940 3.73381 3.93201 4.08405 4.21168 4.23236 4.33250 4.37101 4.39265 4.44385 4.52796 4.55597 4.61852 4.64855 4.69724 4.72258 4.81028 4.87570 4.89530 4.91319 4.95541 5.00077 5.08794 5.15663 5.18434 5.25365 5.43777 5.51912 5.73938 5.84907 6.06436 6.26055 6.28675 6.39449 6.50277 6.84890 7.37253 8.91094 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022647 B = 0.003450 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.092925 B = 8113.940674 C = 8907.086578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.390 6.390 3 C 0.073 3.927 4 C 0.094 3.906 5 H 0.055 0.945 6 N -0.680 5.680 7 C 0.074 3.926 8 C -0.091 4.091 9 C 0.026 3.974 10 C -0.542 4.542 11 H 0.059 0.941 12 C -0.002 4.002 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.262 1.262 16 H -0.278 1.278 17 H -0.277 1.277 18 C -0.077 4.077 19 C -0.155 4.155 20 C 0.063 3.937 21 O -0.404 6.404 22 C 0.060 3.940 23 C -0.143 4.143 24 H 0.093 0.907 25 H 0.053 0.947 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.344 0.656 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.051 0.949 33 H 0.049 0.951 34 H -0.010 1.010 35 H -0.008 1.008 36 H 0.264 0.736 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.308 -6.316 22.571 24.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.309 6.309 3 C -0.005 4.005 4 C -0.016 4.016 5 H 0.073 0.927 6 N -0.313 5.313 7 C -0.055 4.055 8 C -0.129 4.129 9 C -0.012 4.012 10 C -0.580 4.580 11 H 0.077 0.923 12 C -0.200 4.200 13 N -0.574 5.574 14 Si 0.791 3.209 15 H -0.186 1.186 16 H -0.203 1.203 17 H -0.202 1.202 18 C -0.096 4.096 19 C -0.193 4.193 20 C -0.014 4.014 21 O -0.323 6.323 22 C -0.017 4.017 23 C -0.181 4.181 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.164 0.836 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.008 0.992 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.715 -6.452 22.432 24.031 hybrid contribution 0.614 0.717 -1.260 1.574 sum -5.101 -5.735 21.173 22.521 Atomic orbital electron populations 1.22855 0.80718 1.03355 1.00156 1.87929 1.20072 1.27574 1.95316 1.22589 0.93153 0.85010 0.99697 1.21651 0.93854 0.96736 0.89331 0.92745 1.60472 1.37989 1.27201 1.05651 1.21862 0.99192 0.93124 0.91348 1.21351 0.99760 0.98121 0.93637 1.18967 0.94695 0.94226 0.93298 1.21724 1.45186 0.94663 0.96427 0.92310 1.26003 0.95560 0.95526 1.02867 1.70108 1.50541 1.07140 1.29641 0.85379 0.77956 0.78992 0.78601 1.18625 1.20326 1.20227 1.21143 0.94760 1.00273 0.93377 1.22304 0.95917 1.01661 0.99447 1.22611 0.99079 0.95731 0.83935 1.87892 1.20901 1.82225 1.41269 1.22692 0.80230 0.99722 0.99020 1.22205 1.01667 1.00184 0.94036 0.88888 0.92796 0.94862 0.91240 0.94994 0.83595 0.92518 0.95841 0.93070 0.93229 0.99184 0.99006 0.92763 0.90244 0.91747 0.90593 0.92430 0.87949 0.87520 0.92646 0.91385 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.72 16 2 O -0.39 -9.71 9.88 -148.98 -1.47 -11.18 16 3 C 0.07 1.70 5.06 71.98 0.36 2.06 16 4 C 0.09 2.25 2.03 44.92 0.09 2.34 16 5 H 0.05 1.32 7.80 -2.39 -0.02 1.30 16 6 N -0.68 -19.91 6.25 -491.57 -3.07 -22.99 16 7 C 0.07 2.61 5.48 86.30 0.47 3.08 16 8 C -0.09 -3.88 5.41 30.59 0.17 -3.71 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 12 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 13 N -0.93 -57.68 13.29 21.45 0.28 -57.39 16 14 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 15 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 C -0.08 -1.53 1.70 -10.67 -0.02 -1.54 16 19 C -0.16 -2.94 5.19 30.68 0.16 -2.78 16 20 C 0.06 1.09 6.84 72.01 0.49 1.59 16 21 O -0.40 -8.11 10.76 -148.98 -1.60 -9.71 16 22 C 0.06 0.94 6.84 72.02 0.49 1.43 16 23 C -0.14 -2.35 4.84 30.69 0.15 -2.20 16 24 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 1.27 6.72 -2.39 -0.02 1.26 16 28 H 0.03 0.85 7.36 -2.39 -0.02 0.83 16 29 H 0.34 9.38 6.53 -89.69 -0.59 8.80 16 30 H 0.06 2.09 7.36 -2.39 -0.02 2.07 16 31 H 0.02 0.82 8.05 -2.39 -0.02 0.80 16 32 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 34 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 35 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 36 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.08 1.79 7.74 -2.39 -0.02 1.77 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.44 6.55 -2.38 -0.02 1.42 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.08 1.26 6.67 -2.39 -0.02 1.25 16 Total: -1.00 -67.30 351.66 0.97 -66.32 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.35 Total: 15.53 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 4.46 Total: -27.58 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.79 Total: -80.38 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -3.08 Total: -20.90 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -67.30 0.97 -66.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187950477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.960 kcal (2) G-P(sol) polarization free energy of solvation -67.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds