Wall clock time and date at job start Mon Mar 30 2020 06:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00453 * 2 1 4 4 C 1.52994 * 109.47338 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47340 * 175.00026 * 4 3 2 6 6 N 1.46906 * 109.47113 * 294.99847 * 4 3 2 7 7 C 1.46901 * 110.99793 * 275.00325 * 6 4 3 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47116 * 59.99479 * 14 12 10 16 16 H 1.48490 * 109.47381 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46756 * 300.00079 * 14 12 10 18 18 C 1.53002 * 109.47222 * 54.99866 * 4 3 2 19 19 C 1.53180 * 109.54135 * 179.82549 * 18 4 3 20 20 C 1.53107 * 109.15390 * 183.24143 * 19 18 4 21 21 O 1.42907 * 109.48680 * 57.47192 * 20 19 18 22 22 C 1.42897 * 114.09783 * 298.88994 * 21 20 19 23 23 C 1.53084 * 109.41763 * 61.15946 * 22 21 20 24 24 H 1.08997 * 109.47548 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.47062 * 299.99802 * 1 2 3 26 26 H 1.08994 * 109.47362 * 59.99877 * 1 2 3 27 27 H 1.08998 * 109.46931 * 59.99794 * 3 2 1 28 28 H 1.09007 * 109.46587 * 300.00378 * 3 2 1 29 29 H 1.00898 * 110.99995 * 38.95403 * 6 4 3 30 30 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 31 31 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 32 32 H 1.09001 * 109.47194 * 299.99524 * 8 7 6 33 33 H 1.08992 * 109.47399 * 59.99697 * 8 7 6 34 34 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 35 35 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 36 36 H 0.97000 * 119.99425 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.53850 * 299.99849 * 18 4 3 38 38 H 1.09006 * 109.52087 * 303.05238 * 19 18 4 39 39 H 1.08992 * 109.52299 * 63.24637 * 19 18 4 40 40 H 1.08990 * 109.40574 * 297.49073 * 20 19 18 41 41 H 1.08996 * 109.49053 * 177.50445 * 20 19 18 42 42 H 1.09007 * 109.47590 * 301.17444 * 22 21 20 43 43 H 1.09003 * 109.48017 * 181.14489 * 22 21 20 44 44 H 1.09007 * 109.52439 * 182.48743 * 23 22 21 45 45 H 1.09001 * 109.57996 * 62.32562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1764 -0.0902 6 7 3.9779 0.5622 1.2543 7 6 4.1207 1.5655 2.3178 8 6 4.5824 0.8811 3.6059 9 6 4.7306 1.9260 4.7137 10 6 5.1847 1.2519 5.9826 11 1 5.3507 0.1847 5.9977 12 6 5.3885 1.9973 7.1245 13 7 5.1869 3.2968 7.1061 14 14 5.9521 1.1618 8.6973 15 1 7.2600 0.4981 8.4640 16 1 6.0958 2.1758 9.7724 17 1 4.9479 0.1468 9.1058 18 6 3.9780 0.3197 -1.1826 19 6 5.5052 0.2012 -1.1873 20 6 5.9434 -0.5975 -2.4179 21 8 5.4601 0.0445 -3.5997 22 6 4.0360 0.1394 -3.6713 23 6 3.5214 0.9695 -2.4924 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.3477 -0.1744 1.5345 30 1 3.1609 2.0530 2.4888 31 1 4.8581 2.3102 2.0180 32 1 3.8453 0.1362 3.9059 33 1 5.5423 0.3940 3.4346 34 1 5.4675 2.6712 4.4140 35 1 3.7705 2.4128 4.8848 36 1 5.3306 3.8212 7.9093 37 1 3.5356 -0.6726 -1.0941 38 1 5.9477 1.1967 -1.2242 39 1 5.8336 -0.3111 -0.2830 40 1 5.5349 -1.6062 -2.3592 41 1 7.0317 -0.6473 -2.4505 42 1 3.6026 -0.8599 -3.6290 43 1 3.7504 0.6204 -4.6068 44 1 2.4323 1.0060 -2.5205 45 1 3.9216 1.9814 -2.5559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187950505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:16 Heat of formation + Delta-G solvation = -120.530792 kcal Electronic energy + Delta-G solvation = -21580.909778 eV Core-core repulsion = 18404.356534 eV Total energy + Delta-G solvation = -3176.553244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.82303 -38.25115 -36.33545 -34.42163 -32.93404 -31.16864 -31.08250 -28.76357 -26.67449 -25.65106 -24.92903 -23.44300 -22.47911 -21.02648 -20.39370 -19.64065 -16.71766 -16.37958 -16.22531 -16.09961 -15.81241 -15.65595 -14.88244 -14.77038 -14.56144 -14.32313 -13.85359 -13.72498 -13.18956 -12.78020 -12.41822 -12.32895 -12.00649 -11.84350 -11.62484 -11.55673 -11.40983 -11.34639 -10.84019 -10.76718 -10.59434 -10.54845 -10.43075 -10.25544 -9.82536 -9.66058 -9.56084 -9.28231 -9.03283 -8.32115 -8.08744 -5.97589 -3.99541 3.35221 3.39158 3.42100 3.59470 3.81253 4.35443 4.49661 4.57373 4.79428 4.87802 4.96702 5.02087 5.11364 5.19330 5.23185 5.24545 5.30677 5.38134 5.39228 5.47165 5.49052 5.56381 5.64375 5.75925 5.80734 5.87474 5.91994 5.94908 6.10815 6.31835 6.34924 6.43976 6.75586 6.79905 6.96672 7.12934 7.16836 7.40376 7.69949 7.72570 7.86383 8.03005 8.46524 9.07521 9.64284 11.13869 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.003466 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.789590 B = 8076.964742 C = 8873.582887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.027 3.973 4 C 0.098 3.902 5 H 0.087 0.913 6 N -0.680 5.680 7 C 0.059 3.941 8 C -0.106 4.106 9 C 0.023 3.977 10 C -0.519 4.519 11 H 0.054 0.946 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.071 4.071 19 C -0.141 4.141 20 C 0.059 3.941 21 O -0.388 6.388 22 C 0.064 3.936 23 C -0.152 4.152 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.346 0.654 30 H 0.021 0.979 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.015 0.985 35 H 0.012 0.988 36 H 0.260 0.740 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.875 -5.516 -20.965 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.051 4.051 4 C -0.013 4.013 5 H 0.105 0.895 6 N -0.311 5.311 7 C -0.070 4.070 8 C -0.144 4.144 9 C -0.015 4.015 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.090 4.090 19 C -0.179 4.179 20 C -0.018 4.018 21 O -0.307 6.307 22 C -0.013 4.013 23 C -0.190 4.190 24 H 0.103 0.897 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.165 0.835 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.959 -5.438 -21.147 22.633 hybrid contribution -1.206 0.105 1.452 1.890 sum -7.165 -5.333 -19.695 21.625 Atomic orbital electron populations 1.22724 0.81312 1.02625 0.99816 1.87854 1.19385 1.27621 1.95326 1.23366 0.96347 0.85057 1.00336 1.21694 0.89629 0.98477 0.91520 0.89520 1.60563 1.54077 1.13417 1.03009 1.22165 0.98927 0.94105 0.91786 1.21604 1.00162 0.99398 0.93229 1.19057 0.96860 0.93676 0.91911 1.21230 1.45062 0.94187 0.95224 0.92725 1.25031 0.95664 0.94842 0.98992 1.69961 1.49622 1.05333 1.28773 0.86654 0.79312 0.79108 0.82908 1.20194 1.21334 1.20283 1.21029 0.95745 0.99911 0.92306 1.22114 0.95490 1.01516 0.98732 1.22653 0.99337 0.95028 0.84749 1.87900 1.21001 1.80332 1.41475 1.22504 0.81505 0.99004 0.98265 1.22276 1.01027 1.00268 0.95409 0.89684 0.94106 0.94395 0.93189 0.93101 0.83478 0.96086 0.91599 0.93717 0.92541 0.96617 0.96939 0.93012 0.90271 0.91677 0.89164 0.93460 0.89131 0.93403 0.89383 0.91175 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.45 9.19 -35.23 -0.32 -4.77 16 3 C 0.03 0.31 5.11 37.15 0.19 0.50 16 4 C 0.10 1.18 2.00 -67.71 -0.14 1.04 16 5 H 0.09 1.07 7.80 -51.93 -0.40 0.67 16 6 N -0.68 -9.85 5.56 -106.72 -0.59 -10.44 16 7 C 0.06 1.01 5.48 -3.82 -0.02 0.99 16 8 C -0.11 -2.22 5.41 -26.73 -0.14 -2.36 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 11 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 14 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 C -0.07 -0.78 1.84 -90.43 -0.17 -0.95 16 19 C -0.14 -1.61 5.22 -26.58 -0.14 -1.75 16 20 C 0.06 0.62 6.84 37.21 0.25 0.87 16 21 O -0.39 -4.54 10.77 -35.23 -0.38 -4.92 16 22 C 0.06 0.60 6.84 37.20 0.25 0.86 16 23 C -0.15 -1.44 4.98 -26.59 -0.13 -1.57 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.61 7.35 -51.93 -0.38 0.23 16 28 H 0.05 0.49 6.79 -51.93 -0.35 0.14 16 29 H 0.35 5.14 7.94 -39.29 -0.31 4.83 16 30 H 0.02 0.36 7.36 -51.93 -0.38 -0.02 16 31 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.08 0.95 7.56 -51.93 -0.39 0.56 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.13 7.72 -51.93 -0.40 0.73 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.43 8.14 -51.92 -0.42 0.00 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.61 6.74 -51.93 -0.35 0.26 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -30.67 353.18 -8.17 -38.84 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.43 Total: -0.13 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 0.52 Total: -14.26 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.14 Total: -37.01 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.70 Total: -9.69 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.67 -8.17 -38.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187950505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.687 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds