Wall clock time and date at job start Mon Mar 30 2020 06:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00453 * 2 1 4 4 C 1.52994 * 109.47338 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47340 * 175.00026 * 4 3 2 6 6 N 1.46906 * 109.47113 * 294.99847 * 4 3 2 7 7 C 1.46901 * 110.99793 * 275.00325 * 6 4 3 8 8 C 1.53000 * 109.46769 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47116 * 59.99479 * 14 12 10 16 16 H 1.48490 * 109.47381 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46756 * 300.00079 * 14 12 10 18 18 C 1.53002 * 109.47222 * 54.99866 * 4 3 2 19 19 C 1.53180 * 109.54135 * 179.82549 * 18 4 3 20 20 C 1.53107 * 109.15390 * 183.24143 * 19 18 4 21 21 O 1.42907 * 109.48680 * 57.47192 * 20 19 18 22 22 C 1.42897 * 114.09783 * 298.88994 * 21 20 19 23 23 C 1.53084 * 109.41763 * 61.15946 * 22 21 20 24 24 H 1.08997 * 109.47548 * 180.02562 * 1 2 3 25 25 H 1.09011 * 109.47062 * 299.99802 * 1 2 3 26 26 H 1.08994 * 109.47362 * 59.99877 * 1 2 3 27 27 H 1.08998 * 109.46931 * 59.99794 * 3 2 1 28 28 H 1.09007 * 109.46587 * 300.00378 * 3 2 1 29 29 H 1.00898 * 110.99995 * 38.95403 * 6 4 3 30 30 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 31 31 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 32 32 H 1.09001 * 109.47194 * 299.99524 * 8 7 6 33 33 H 1.08992 * 109.47399 * 59.99697 * 8 7 6 34 34 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 35 35 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 36 36 H 0.97000 * 119.99425 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.53850 * 299.99849 * 18 4 3 38 38 H 1.09006 * 109.52087 * 303.05238 * 19 18 4 39 39 H 1.08992 * 109.52299 * 63.24637 * 19 18 4 40 40 H 1.08990 * 109.40574 * 297.49073 * 20 19 18 41 41 H 1.08996 * 109.49053 * 177.50445 * 20 19 18 42 42 H 1.09007 * 109.47590 * 301.17444 * 22 21 20 43 43 H 1.09003 * 109.48017 * 181.14489 * 22 21 20 44 44 H 1.09007 * 109.52439 * 182.48743 * 23 22 21 45 45 H 1.09001 * 109.57996 * 62.32562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1764 -0.0902 6 7 3.9779 0.5622 1.2543 7 6 4.1207 1.5655 2.3178 8 6 4.5824 0.8811 3.6059 9 6 4.7306 1.9260 4.7137 10 6 5.1847 1.2519 5.9826 11 1 5.3507 0.1847 5.9977 12 6 5.3885 1.9973 7.1245 13 7 5.1869 3.2968 7.1061 14 14 5.9521 1.1618 8.6973 15 1 7.2600 0.4981 8.4640 16 1 6.0958 2.1758 9.7724 17 1 4.9479 0.1468 9.1058 18 6 3.9780 0.3197 -1.1826 19 6 5.5052 0.2012 -1.1873 20 6 5.9434 -0.5975 -2.4179 21 8 5.4601 0.0445 -3.5997 22 6 4.0360 0.1394 -3.6713 23 6 3.5214 0.9695 -2.4924 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.3477 -0.1744 1.5345 30 1 3.1609 2.0530 2.4888 31 1 4.8581 2.3102 2.0180 32 1 3.8453 0.1362 3.9059 33 1 5.5423 0.3940 3.4346 34 1 5.4675 2.6712 4.4140 35 1 3.7705 2.4128 4.8848 36 1 5.3306 3.8212 7.9093 37 1 3.5356 -0.6726 -1.0941 38 1 5.9477 1.1967 -1.2242 39 1 5.8336 -0.3111 -0.2830 40 1 5.5349 -1.6062 -2.3592 41 1 7.0317 -0.6473 -2.4505 42 1 3.6026 -0.8599 -3.6290 43 1 3.7504 0.6204 -4.6068 44 1 2.4323 1.0060 -2.5205 45 1 3.9216 1.9814 -2.5559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187950505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:16 Heat of formation + Delta-G solvation = -140.679440 kcal Electronic energy + Delta-G solvation = -21581.783489 eV Core-core repulsion = 18404.356534 eV Total energy + Delta-G solvation = -3177.426955 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.71108 -39.13429 -37.49045 -35.94733 -34.60497 -32.70118 -31.97580 -29.99807 -27.87463 -26.97684 -25.86447 -24.45835 -24.02701 -22.12151 -21.88638 -20.72983 -18.49320 -17.50607 -17.23324 -17.05428 -16.77406 -16.57081 -16.45762 -15.89410 -15.70751 -15.55229 -15.27352 -14.51844 -14.30298 -14.21021 -13.86016 -13.61344 -13.19730 -13.11344 -12.98080 -12.69707 -12.60343 -12.45838 -12.38971 -12.24662 -12.16444 -11.68835 -11.57600 -11.46651 -11.32282 -11.13911 -11.01132 -10.62051 -10.55118 -10.37707 -9.28144 -8.20452 -6.31521 1.39647 1.42976 1.50925 2.40822 2.74722 3.04262 3.12528 3.28956 3.66747 3.90410 4.03124 4.15372 4.16883 4.23901 4.32631 4.35217 4.40652 4.46760 4.49051 4.53113 4.55007 4.66820 4.74454 4.75312 4.84720 4.86748 4.94850 4.97843 5.02493 5.05344 5.11427 5.23351 5.26413 5.41104 5.51246 5.54355 5.75109 5.85515 6.05492 6.20964 6.28904 6.33942 6.50641 6.85153 7.37655 8.91291 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.022309 B = 0.003466 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.789590 B = 8076.964742 C = 8873.582887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.032 3.968 4 C 0.097 3.903 5 H 0.084 0.916 6 N -0.678 5.678 7 C 0.074 3.926 8 C -0.091 4.091 9 C 0.026 3.974 10 C -0.544 4.544 11 H 0.059 0.941 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.267 1.267 18 C -0.063 4.063 19 C -0.138 4.138 20 C 0.060 3.940 21 O -0.405 6.405 22 C 0.060 3.940 23 C -0.145 4.145 24 H 0.097 0.903 25 H 0.036 0.964 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.346 0.654 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.053 0.947 34 H -0.008 1.008 35 H -0.011 1.011 36 H 0.264 0.736 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 -6.590 -21.752 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.046 4.046 4 C -0.014 4.014 5 H 0.102 0.898 6 N -0.308 5.308 7 C -0.055 4.055 8 C -0.129 4.129 9 C -0.011 4.011 10 C -0.582 4.582 11 H 0.077 0.923 12 C -0.199 4.199 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.192 1.192 18 C -0.082 4.082 19 C -0.176 4.176 20 C -0.016 4.016 21 O -0.325 6.325 22 C -0.016 4.016 23 C -0.183 4.183 24 H 0.115 0.885 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.165 0.835 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.010 0.990 35 H 0.008 0.992 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.072 0.928 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.449 -6.523 -21.955 23.794 hybrid contribution -1.092 0.452 1.658 2.036 sum -7.541 -6.070 -20.297 22.488 Atomic orbital electron populations 1.22889 0.79916 1.03702 1.00433 1.87828 1.20934 1.27627 1.95441 1.23259 0.95396 0.85223 1.00701 1.21753 0.90629 0.98436 0.90549 0.89757 1.60493 1.54617 1.12727 1.02976 1.21845 0.98508 0.94136 0.91012 1.21350 1.00211 0.97955 0.93367 1.18958 0.94663 0.94253 0.93255 1.21678 1.45388 0.94650 0.96523 0.92305 1.25996 0.95531 0.95488 1.02869 1.70093 1.50424 1.06935 1.29964 0.85495 0.79224 0.78175 0.78134 1.19151 1.20742 1.19158 1.20945 0.95278 0.99398 0.92618 1.22055 0.95856 1.00952 0.98704 1.22666 0.99902 0.95026 0.84022 1.87881 1.22365 1.80509 1.41708 1.22673 0.80449 0.99571 0.98949 1.22228 1.01746 0.99962 0.94396 0.88463 0.94497 0.92747 0.94462 0.91057 0.83521 0.96288 0.91977 0.93499 0.92849 0.99010 0.99230 0.92759 0.90930 0.92627 0.90538 0.92766 0.88424 0.92750 0.87630 0.89912 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.40 -8.62 9.19 -148.98 -1.37 -9.99 16 3 C 0.03 0.68 5.11 71.98 0.37 1.05 16 4 C 0.10 2.25 2.00 44.91 0.09 2.34 16 5 H 0.08 2.02 7.80 -2.39 -0.02 2.00 16 6 N -0.68 -19.36 5.56 -491.55 -2.73 -22.09 16 7 C 0.07 2.57 5.48 86.30 0.47 3.04 16 8 C -0.09 -3.85 5.41 30.59 0.17 -3.68 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 11 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 12 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 13 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 14 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 C -0.06 -1.31 1.84 -10.67 -0.02 -1.33 16 19 C -0.14 -3.06 5.22 30.69 0.16 -2.90 16 20 C 0.06 1.20 6.84 72.02 0.49 1.69 16 21 O -0.41 -8.83 10.77 -148.98 -1.60 -10.43 16 22 C 0.06 1.00 6.84 72.01 0.49 1.49 16 23 C -0.15 -2.46 4.98 30.68 0.15 -2.31 16 24 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.04 0.88 7.35 -2.39 -0.02 0.86 16 28 H 0.07 1.21 6.79 -2.38 -0.02 1.19 16 29 H 0.35 10.06 7.94 -89.70 -0.71 9.34 16 30 H 0.02 0.66 7.36 -2.39 -0.02 0.65 16 31 H 0.06 2.20 8.06 -2.39 -0.02 2.18 16 32 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 34 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 35 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H 0.26 15.28 8.31 -92.71 -0.77 14.50 16 37 H 0.07 1.64 7.56 -2.39 -0.02 1.62 16 38 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.08 1.90 7.72 -2.39 -0.02 1.88 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.21 6.74 -2.38 -0.02 1.19 16 45 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -65.55 353.18 1.29 -64.26 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.22 Total: 17.21 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 4.47 Total: -28.49 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -2.45 Total: -79.46 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -2.97 Total: -20.42 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.55 1.29 -64.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187950505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.417 kcal (2) G-P(sol) polarization free energy of solvation -65.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds