Wall clock time and date at job start Mon Mar 30 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00479 * 2 1 4 4 C 1.52997 * 109.47526 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47032 * 66.13929 * 4 3 2 6 6 C 1.46901 * 110.99634 * 288.46901 * 5 4 3 7 7 C 1.50703 * 109.46942 * 167.58784 * 6 5 4 8 8 H 1.07998 * 119.99792 * 123.49763 * 7 6 5 9 9 C 1.37872 * 120.00152 * 303.50381 * 7 6 5 10 10 N 1.31510 * 120.00378 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99839 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47260 * 270.00385 * 11 9 7 13 13 H 1.48495 * 109.46933 * 30.00562 * 11 9 7 14 14 H 1.48501 * 109.46924 * 150.00110 * 11 9 7 15 15 C 1.46898 * 111.00151 * 164.51454 * 5 4 3 16 16 H 1.08998 * 109.47188 * 79.07591 * 15 5 4 17 17 C 1.53000 * 109.46886 * 319.07231 * 15 5 4 18 18 C 1.53008 * 109.47024 * 180.02562 * 17 15 5 19 19 C 1.53003 * 109.47118 * 60.00064 * 18 17 15 20 20 C 1.53002 * 109.46761 * 300.00273 * 19 18 17 21 21 H 1.08999 * 109.46813 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.46975 * 299.99757 * 20 19 18 23 23 C 1.42906 * 113.99887 * 270.00258 * 22 20 19 24 24 C 1.52994 * 109.47597 * 60.00110 * 20 19 18 25 25 H 1.09001 * 109.47239 * 300.00455 * 1 2 3 26 26 H 1.09000 * 109.46519 * 59.99896 * 1 2 3 27 27 H 1.08996 * 109.47490 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47129 * 59.99667 * 3 2 1 29 29 H 1.08996 * 109.47485 * 299.99927 * 3 2 1 30 30 H 1.08998 * 109.47271 * 306.13931 * 4 3 2 31 31 H 1.09007 * 109.47274 * 186.13660 * 4 3 2 32 32 H 1.08998 * 109.47250 * 47.58873 * 6 5 4 33 33 H 1.08996 * 109.46967 * 287.58442 * 6 5 4 34 34 H 0.97005 * 120.00735 * 179.97438 * 10 9 7 35 35 H 1.08997 * 109.47255 * 299.99677 * 17 15 5 36 36 H 1.09001 * 109.47561 * 60.00173 * 17 15 5 37 37 H 1.08998 * 109.46953 * 300.00302 * 18 17 15 38 38 H 1.08997 * 109.47296 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.46798 * 180.02562 * 19 18 17 40 40 H 1.09000 * 109.47035 * 59.99734 * 19 18 17 41 41 H 1.09007 * 109.46496 * 180.02562 * 23 22 20 42 42 H 1.08992 * 109.47145 * 299.99813 * 23 22 20 43 43 H 1.08992 * 109.47170 * 60.00458 * 23 22 20 44 44 H 1.08997 * 109.47365 * 179.97438 * 24 20 19 45 45 H 1.08998 * 109.47027 * 59.99477 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9799 0.5871 -1.2657 6 6 3.6320 -0.8388 -1.3257 7 6 3.8205 -1.3431 -2.7333 8 1 4.4743 -2.1814 -2.9235 9 6 3.1584 -0.7342 -3.7782 10 7 3.3233 -1.1739 -5.0066 11 14 2.0271 0.7154 -3.4490 12 1 0.6508 0.2207 -3.1916 13 1 2.5141 1.4638 -2.2625 14 1 2.0172 1.6140 -4.6312 15 6 5.4217 0.7861 -1.4644 16 1 5.9742 0.0600 -0.8681 17 6 5.8058 2.2017 -1.0291 18 6 7.3075 2.4092 -1.2365 19 6 7.6489 2.2203 -2.7160 20 6 7.2646 0.8047 -3.1513 21 1 7.5082 0.6700 -4.2051 22 8 7.9895 -0.1471 -2.3698 23 6 9.2473 -0.5246 -2.9335 24 6 5.7630 0.5972 -2.9438 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6888 1.8463 -0.8899 30 1 3.8495 0.5518 0.8308 31 1 3.9784 2.1745 0.1105 32 1 2.5919 -0.9719 -1.0283 33 1 4.2778 -1.3991 -0.6496 34 1 2.8572 -0.7458 -5.7417 35 1 5.2533 2.9277 -1.6254 36 1 5.5623 2.3365 0.0248 37 1 7.8604 1.6831 -0.6405 38 1 7.5813 3.4175 -0.9260 39 1 8.7187 2.3677 -2.8637 40 1 7.0959 2.9463 -3.3120 41 1 9.7347 -1.2494 -2.2813 42 1 9.0864 -0.9701 -3.9151 43 1 9.8797 0.3573 -3.0339 44 1 5.4893 -0.4111 -3.2543 45 1 5.2102 1.3233 -3.5398 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226545835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:30 Heat of formation + Delta-G solvation = -61.459600 kcal Electronic energy + Delta-G solvation = -23639.574694 eV Core-core repulsion = 20465.582969 eV Total energy + Delta-G solvation = -3173.991725 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.24458 -37.81765 -36.43135 -34.30186 -32.44009 -30.20642 -29.36247 -28.66453 -26.48584 -26.06120 -25.35004 -22.45078 -21.74895 -21.24522 -19.94314 -18.95401 -16.83524 -16.21383 -15.78068 -15.54185 -15.19627 -14.96100 -14.70921 -14.13285 -14.01240 -13.66442 -13.58037 -13.14165 -12.69306 -12.38011 -12.24466 -11.92395 -11.69160 -11.48358 -11.34557 -11.12220 -11.01418 -10.72556 -10.54828 -10.40119 -10.32753 -10.17325 -9.83179 -9.75284 -9.53439 -9.40744 -9.10117 -8.95573 -8.65250 -8.06479 -6.63452 -5.85434 -3.82156 3.59934 3.67974 3.97057 4.27124 4.33784 4.84778 4.85283 5.24802 5.28242 5.38107 5.51101 5.55655 5.58293 5.65251 5.69050 5.76935 5.79318 5.85071 5.89403 5.91634 5.96723 5.98293 6.03344 6.08000 6.15673 6.20804 6.33761 6.37687 6.42794 6.51042 6.66593 6.76222 6.85220 7.06562 7.27717 7.44482 7.62045 7.75434 7.91697 7.97151 8.23991 8.45701 8.79679 9.14110 9.82463 11.23334 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019350 B = 0.008094 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.669759 B = 3458.620833 C = 4163.354567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.369 6.369 3 C 0.056 3.944 4 C 0.042 3.958 5 N -0.523 5.523 6 C 0.141 3.859 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.088 3.912 10 N -0.907 5.907 11 Si 0.841 3.159 12 H -0.300 1.300 13 H -0.166 1.166 14 H -0.315 1.315 15 C 0.108 3.892 16 H 0.038 0.962 17 C -0.124 4.124 18 C -0.107 4.107 19 C -0.140 4.140 20 C 0.088 3.912 21 H 0.052 0.948 22 O -0.374 6.374 23 C 0.032 3.968 24 C -0.116 4.116 25 H 0.032 0.968 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.083 0.917 32 H 0.071 0.929 33 H -0.006 1.006 34 H 0.258 0.742 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.031 0.969 44 H 0.135 0.865 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.444 8.149 7.985 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.288 6.288 3 C -0.021 4.021 4 C -0.086 4.086 5 N -0.249 5.249 6 C 0.016 3.984 7 C -0.547 4.547 8 H 0.083 0.917 9 C -0.115 4.115 10 N -0.545 5.545 11 Si 0.671 3.329 12 H -0.228 1.228 13 H -0.088 1.088 14 H -0.244 1.244 15 C 0.000 4.000 16 H 0.056 0.944 17 C -0.162 4.162 18 C -0.145 4.145 19 C -0.178 4.178 20 C 0.030 3.970 21 H 0.070 0.930 22 O -0.293 6.293 23 C -0.065 4.065 24 C -0.153 4.153 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.012 0.988 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.153 0.847 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.199 8.163 7.631 11.937 hybrid contribution -0.210 0.648 0.104 0.689 sum 3.989 8.810 7.735 12.384 Atomic orbital electron populations 1.22704 0.82840 1.02348 0.99073 1.88082 1.18323 1.27572 1.94811 1.22873 0.94633 0.85162 0.99386 1.22276 0.92906 1.00124 0.93317 1.63229 1.13563 1.19406 1.28711 1.20625 0.98226 0.82439 0.97070 1.20826 1.27895 1.15886 0.90130 0.91680 1.24901 0.95607 0.96694 0.94312 1.69992 1.43221 1.41825 0.99432 0.87844 0.79455 0.85035 0.80575 1.22829 1.08792 1.24368 1.21234 0.88279 0.93491 0.96957 0.94426 1.21915 0.95350 0.98760 1.00175 1.21353 0.96734 1.00161 0.96248 1.22047 1.00046 0.98202 0.97467 1.22361 0.94484 0.86841 0.93352 0.92958 1.87975 1.31110 1.61753 1.48466 1.22684 0.86560 0.98664 0.98625 1.22301 0.89121 1.08158 0.95754 0.94971 0.94482 0.90038 0.94494 0.91988 0.95306 0.89884 0.91158 0.98756 0.93268 0.91958 0.92505 0.91744 0.93167 0.93084 0.91516 0.90476 0.94363 0.95076 0.84739 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.98 7.28 -35.23 -0.26 -7.24 16 3 C 0.06 0.95 5.40 37.16 0.20 1.16 16 4 C 0.04 0.75 4.89 -3.82 -0.02 0.73 16 5 N -0.52 -11.05 1.19 -228.08 -0.27 -11.32 16 6 C 0.14 3.42 4.22 -4.97 -0.02 3.40 16 7 C -0.51 -14.28 6.69 -34.44 -0.23 -14.51 16 8 H 0.07 2.02 8.02 -52.49 -0.42 1.60 16 9 C 0.09 2.50 4.34 -17.82 -0.08 2.42 16 10 N -0.91 -27.71 13.96 55.43 0.77 -26.94 16 11 Si 0.84 21.20 25.16 -169.99 -4.28 16.93 16 12 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 13 H -0.17 -3.71 2.54 56.52 0.14 -3.56 16 14 H -0.32 -8.32 7.11 56.52 0.40 -7.92 16 15 C 0.11 2.17 1.89 -67.71 -0.13 2.04 16 16 H 0.04 0.83 7.39 -51.93 -0.38 0.44 16 17 C -0.12 -2.02 4.28 -26.73 -0.11 -2.14 16 18 C -0.11 -1.58 5.78 -26.73 -0.15 -1.73 16 19 C -0.14 -2.12 5.63 -26.73 -0.15 -2.27 16 20 C 0.09 1.59 2.92 -26.73 -0.08 1.51 16 21 H 0.05 0.94 7.78 -51.93 -0.40 0.53 16 22 O -0.37 -6.87 9.00 -35.23 -0.32 -7.19 16 23 C 0.03 0.45 10.82 101.05 1.09 1.55 16 24 C -0.12 -2.51 3.88 -26.73 -0.10 -2.61 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.06 1.11 5.53 -51.93 -0.29 0.83 16 30 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 31 H 0.08 1.29 5.22 -51.93 -0.27 1.02 16 32 H 0.07 1.75 4.29 -51.93 -0.22 1.53 16 33 H -0.01 -0.15 7.91 -51.93 -0.41 -0.56 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.85 6.07 -51.93 -0.32 0.53 16 37 H 0.06 1.00 7.68 -51.93 -0.40 0.60 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.69 7.87 -51.93 -0.41 0.28 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 43 H 0.03 0.38 7.87 -51.93 -0.41 -0.03 16 44 H 0.14 3.50 4.51 -51.93 -0.23 3.27 16 45 H 0.06 1.39 7.86 -51.93 -0.41 0.98 16 LS Contribution 322.68 15.07 4.86 4.86 Total: -1.00 -30.92 322.68 -6.34 -37.26 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -8.19 Total: 2.55 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 1.33 Total: -8.92 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.50 Total: -38.25 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.57 Total: -14.42 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.28 Total: 16.93 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.92 -6.34 -37.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226545835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.198 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds