Wall clock time and date at job start Mon Mar 30 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 114.00479 * 2 1 4 4 C 1.52997 * 109.47526 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47032 * 66.13929 * 4 3 2 6 6 C 1.46901 * 110.99634 * 288.46901 * 5 4 3 7 7 C 1.50703 * 109.46942 * 167.58784 * 6 5 4 8 8 H 1.07998 * 119.99792 * 123.49763 * 7 6 5 9 9 C 1.37872 * 120.00152 * 303.50381 * 7 6 5 10 10 N 1.31510 * 120.00378 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99839 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47260 * 270.00385 * 11 9 7 13 13 H 1.48495 * 109.46933 * 30.00562 * 11 9 7 14 14 H 1.48501 * 109.46924 * 150.00110 * 11 9 7 15 15 C 1.46898 * 111.00151 * 164.51454 * 5 4 3 16 16 H 1.08998 * 109.47188 * 79.07591 * 15 5 4 17 17 C 1.53000 * 109.46886 * 319.07231 * 15 5 4 18 18 C 1.53008 * 109.47024 * 180.02562 * 17 15 5 19 19 C 1.53003 * 109.47118 * 60.00064 * 18 17 15 20 20 C 1.53002 * 109.46761 * 300.00273 * 19 18 17 21 21 H 1.08999 * 109.46813 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.46975 * 299.99757 * 20 19 18 23 23 C 1.42906 * 113.99887 * 270.00258 * 22 20 19 24 24 C 1.52994 * 109.47597 * 60.00110 * 20 19 18 25 25 H 1.09001 * 109.47239 * 300.00455 * 1 2 3 26 26 H 1.09000 * 109.46519 * 59.99896 * 1 2 3 27 27 H 1.08996 * 109.47490 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47129 * 59.99667 * 3 2 1 29 29 H 1.08996 * 109.47485 * 299.99927 * 3 2 1 30 30 H 1.08998 * 109.47271 * 306.13931 * 4 3 2 31 31 H 1.09007 * 109.47274 * 186.13660 * 4 3 2 32 32 H 1.08998 * 109.47250 * 47.58873 * 6 5 4 33 33 H 1.08996 * 109.46967 * 287.58442 * 6 5 4 34 34 H 0.97005 * 120.00735 * 179.97438 * 10 9 7 35 35 H 1.08997 * 109.47255 * 299.99677 * 17 15 5 36 36 H 1.09001 * 109.47561 * 60.00173 * 17 15 5 37 37 H 1.08998 * 109.46953 * 300.00302 * 18 17 15 38 38 H 1.08997 * 109.47296 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.46798 * 180.02562 * 19 18 17 40 40 H 1.09000 * 109.47035 * 59.99734 * 19 18 17 41 41 H 1.09007 * 109.46496 * 180.02562 * 23 22 20 42 42 H 1.08992 * 109.47145 * 299.99813 * 23 22 20 43 43 H 1.08992 * 109.47170 * 60.00458 * 23 22 20 44 44 H 1.08997 * 109.47365 * 179.97438 * 24 20 19 45 45 H 1.08998 * 109.47027 * 59.99477 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9799 0.5871 -1.2657 6 6 3.6320 -0.8388 -1.3257 7 6 3.8205 -1.3431 -2.7333 8 1 4.4743 -2.1814 -2.9235 9 6 3.1584 -0.7342 -3.7782 10 7 3.3233 -1.1739 -5.0066 11 14 2.0271 0.7154 -3.4490 12 1 0.6508 0.2207 -3.1916 13 1 2.5141 1.4638 -2.2625 14 1 2.0172 1.6140 -4.6312 15 6 5.4217 0.7861 -1.4644 16 1 5.9742 0.0600 -0.8681 17 6 5.8058 2.2017 -1.0291 18 6 7.3075 2.4092 -1.2365 19 6 7.6489 2.2203 -2.7160 20 6 7.2646 0.8047 -3.1513 21 1 7.5082 0.6700 -4.2051 22 8 7.9895 -0.1471 -2.3698 23 6 9.2473 -0.5246 -2.9335 24 6 5.7630 0.5972 -2.9438 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6888 1.8463 -0.8899 30 1 3.8495 0.5518 0.8308 31 1 3.9784 2.1745 0.1105 32 1 2.5919 -0.9719 -1.0283 33 1 4.2778 -1.3991 -0.6496 34 1 2.8572 -0.7458 -5.7417 35 1 5.2533 2.9277 -1.6254 36 1 5.5623 2.3365 0.0248 37 1 7.8604 1.6831 -0.6405 38 1 7.5813 3.4175 -0.9260 39 1 8.7187 2.3677 -2.8637 40 1 7.0959 2.9463 -3.3120 41 1 9.7347 -1.2494 -2.2813 42 1 9.0864 -0.9701 -3.9151 43 1 9.8797 0.3573 -3.0339 44 1 5.4893 -0.4111 -3.2543 45 1 5.2102 1.3233 -3.5398 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226545835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:29 Heat of formation + Delta-G solvation = -82.231498 kcal Electronic energy + Delta-G solvation = -23640.475431 eV Core-core repulsion = 20465.582969 eV Total energy + Delta-G solvation = -3174.892462 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73054 -39.20119 -37.87462 -35.77013 -34.51124 -31.78692 -30.73725 -30.37512 -28.01104 -27.29109 -26.81653 -23.93868 -23.52447 -22.70580 -21.51086 -20.40970 -18.76325 -17.65296 -17.38474 -16.91360 -16.59884 -16.41585 -16.06466 -15.99067 -15.42762 -15.20958 -15.00388 -14.87321 -14.20541 -13.83784 -13.55659 -13.35119 -13.27074 -12.97472 -12.85445 -12.57224 -12.44910 -12.38844 -12.04426 -11.94238 -11.84704 -11.70630 -11.59619 -11.52760 -11.21171 -11.10776 -10.71391 -10.55493 -10.23378 -10.01706 -8.40021 -8.12000 -6.11144 1.53479 1.58039 1.93991 2.71016 3.00649 3.02199 3.14216 3.51365 3.96129 3.99153 4.16042 4.28532 4.36453 4.43678 4.46321 4.51158 4.53573 4.57761 4.59352 4.63370 4.67689 4.72568 4.78610 4.82012 4.86937 4.88720 4.94966 5.01590 5.09905 5.12066 5.22483 5.32167 5.36285 5.44414 5.53535 5.66713 5.84101 6.02186 6.20844 6.39781 6.44359 6.59810 6.80982 6.91327 7.55544 9.00169 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.019350 B = 0.008094 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.669759 B = 3458.620833 C = 4163.354567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.052 3.948 4 C 0.038 3.962 5 N -0.532 5.532 6 C 0.157 3.843 7 C -0.503 4.503 8 H 0.013 0.987 9 C 0.043 3.957 10 N -0.954 5.954 11 Si 0.887 3.113 12 H -0.306 1.306 13 H -0.114 1.114 14 H -0.330 1.330 15 C 0.112 3.888 16 H 0.014 0.986 17 C -0.118 4.118 18 C -0.102 4.102 19 C -0.133 4.133 20 C 0.088 3.912 21 H 0.044 0.956 22 O -0.400 6.400 23 C 0.027 3.973 24 C -0.112 4.112 25 H 0.066 0.934 26 H 0.028 0.972 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.030 0.970 31 H 0.117 0.883 32 H 0.075 0.925 33 H -0.020 1.020 34 H 0.256 0.744 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.031 0.969 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.761 11.595 10.644 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C -0.024 4.024 4 C -0.089 4.089 5 N -0.258 5.258 6 C 0.031 3.969 7 C -0.541 4.541 8 H 0.031 0.969 9 C -0.155 4.155 10 N -0.595 5.595 11 Si 0.717 3.283 12 H -0.235 1.235 13 H -0.036 1.036 14 H -0.260 1.260 15 C 0.004 3.996 16 H 0.032 0.968 17 C -0.155 4.155 18 C -0.140 4.140 19 C -0.170 4.170 20 C 0.030 3.970 21 H 0.062 0.938 22 O -0.320 6.320 23 C -0.070 4.070 24 C -0.150 4.150 25 H 0.084 0.916 26 H 0.047 0.953 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.135 0.865 32 H 0.092 0.908 33 H -0.002 1.002 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.531 11.605 10.321 16.178 hybrid contribution -0.232 -0.579 -0.712 0.947 sum 4.299 11.026 9.608 15.244 Atomic orbital electron populations 1.22854 0.81136 1.03073 1.00265 1.87982 1.20249 1.28934 1.95035 1.22990 0.93726 0.84731 1.00973 1.22505 0.93952 1.01378 0.91104 1.62873 1.14637 1.16812 1.31468 1.20321 0.98170 0.84521 0.93848 1.20881 1.26315 1.14365 0.92567 0.96902 1.25578 0.97057 0.99186 0.93631 1.70133 1.45061 1.43749 1.00560 0.87303 0.77030 0.82411 0.81599 1.23470 1.03573 1.26041 1.21198 0.87198 0.95913 0.95277 0.96752 1.21872 0.96760 0.95379 1.01499 1.21344 0.95247 1.01902 0.95504 1.21991 1.01590 0.95384 0.98083 1.22244 0.92363 0.89220 0.93151 0.93835 1.87921 1.32866 1.62222 1.48974 1.22883 0.85347 1.00195 0.98539 1.21986 0.91930 1.04206 0.96849 0.91596 0.95324 0.89779 0.90298 0.92809 0.95130 0.86523 0.90774 1.00222 0.93594 0.91280 0.90164 0.92523 0.89702 0.90788 0.90773 0.88862 0.95068 0.92498 0.90226 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 11.01 113.37 1.25 1.89 16 2 O -0.40 -14.14 7.28 -148.98 -1.08 -15.22 16 3 C 0.05 1.55 5.40 71.98 0.39 1.94 16 4 C 0.04 1.21 4.89 86.30 0.42 1.63 16 5 N -0.53 -21.78 1.19 -875.51 -1.05 -22.82 16 6 C 0.16 7.77 4.22 85.56 0.36 8.13 16 7 C -0.50 -29.87 6.69 25.60 0.17 -29.69 16 8 H 0.01 0.87 8.02 -2.91 -0.02 0.84 16 9 C 0.04 2.57 4.34 84.65 0.37 2.94 16 10 N -0.95 -61.76 13.96 21.44 0.30 -61.46 16 11 Si 0.89 44.29 25.16 68.60 1.73 46.02 16 12 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 13 H -0.11 -4.81 2.54 99.48 0.25 -4.55 16 14 H -0.33 -17.30 7.11 99.48 0.71 -16.59 16 15 C 0.11 4.39 1.89 44.92 0.09 4.47 16 16 H 0.01 0.64 7.39 -2.39 -0.02 0.62 16 17 C -0.12 -3.37 4.28 30.60 0.13 -3.24 16 18 C -0.10 -2.58 5.78 30.60 0.18 -2.41 16 19 C -0.13 -3.63 5.63 30.60 0.17 -3.46 16 20 C 0.09 3.20 2.92 30.59 0.09 3.29 16 21 H 0.04 1.60 7.78 -2.39 -0.02 1.58 16 22 O -0.40 -14.75 9.00 -148.98 -1.34 -16.09 16 23 C 0.03 0.74 10.82 113.37 1.23 1.97 16 24 C -0.11 -4.96 3.88 30.59 0.12 -4.84 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.05 1.69 5.53 -2.39 -0.01 1.68 16 30 H 0.03 0.99 8.06 -2.39 -0.02 0.97 16 31 H 0.12 2.94 5.22 -2.38 -0.01 2.93 16 32 H 0.07 3.68 4.29 -2.39 -0.01 3.67 16 33 H -0.02 -1.05 7.91 -2.39 -0.02 -1.07 16 34 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 1.95 6.07 -2.39 -0.01 1.94 16 37 H 0.06 1.55 7.68 -2.39 -0.02 1.53 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.71 7.87 -2.39 -0.02 1.69 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 42 H 0.03 0.89 8.08 -2.39 -0.02 0.87 16 43 H 0.06 1.28 7.87 -2.39 -0.02 1.26 16 44 H 0.08 4.43 4.51 -2.39 -0.01 4.42 16 45 H 0.05 2.15 7.86 -2.39 -0.02 2.14 16 Total: -1.00 -72.90 322.68 4.00 -68.90 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.49 Total: 18.06 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 4.96 Total: -17.38 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -0.75 Total: -84.29 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -2.43 Total: -31.31 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.73 Total: 46.02 kcal Total: -72.90 4.00 -68.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226545835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.329 kcal (2) G-P(sol) polarization free energy of solvation -72.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds