Wall clock time and date at job start Mon Mar 30 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00044 * 2 1 4 4 C 1.53004 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47218 * 67.15381 * 4 3 2 6 6 C 1.46900 * 110.99966 * 289.75337 * 5 4 3 7 7 C 1.50698 * 109.47106 * 300.01648 * 6 5 4 8 8 H 1.07996 * 119.99786 * 354.89388 * 7 6 5 9 9 C 1.37881 * 120.00119 * 174.89311 * 7 6 5 10 10 N 1.31518 * 119.99721 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00064 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46979 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46809 * 120.00178 * 11 9 7 14 14 H 1.48498 * 109.46913 * 240.00297 * 11 9 7 15 15 C 1.46901 * 110.99818 * 53.70515 * 5 4 3 16 16 H 1.08998 * 109.47444 * 300.00120 * 15 5 4 17 17 C 1.53000 * 109.47126 * 60.00389 * 15 5 4 18 18 C 1.52996 * 109.47047 * 179.97438 * 17 15 5 19 19 C 1.52998 * 109.47308 * 299.99592 * 18 17 15 20 20 C 1.53000 * 109.46733 * 60.00215 * 19 18 17 21 21 H 1.08998 * 109.47179 * 60.00247 * 20 19 18 22 22 O 1.42906 * 109.46987 * 179.97438 * 20 19 18 23 23 C 1.42895 * 113.99961 * 270.00067 * 22 20 19 24 24 C 1.52998 * 109.47413 * 299.99912 * 20 19 18 25 25 H 1.09000 * 109.46995 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47266 * 300.00087 * 1 2 3 27 27 H 1.09000 * 109.46718 * 60.00217 * 1 2 3 28 28 H 1.09001 * 109.47692 * 59.99840 * 3 2 1 29 29 H 1.09000 * 109.47627 * 299.99752 * 3 2 1 30 30 H 1.09003 * 109.47049 * 307.15302 * 4 3 2 31 31 H 1.09007 * 109.47243 * 187.15439 * 4 3 2 32 32 H 1.09005 * 109.46955 * 60.01547 * 6 5 4 33 33 H 1.09001 * 109.47180 * 180.02562 * 6 5 4 34 34 H 0.97004 * 119.99519 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.46942 * 299.99522 * 17 15 5 36 36 H 1.08998 * 109.47179 * 59.99569 * 17 15 5 37 37 H 1.08998 * 109.47378 * 59.99819 * 18 17 15 38 38 H 1.09009 * 109.47105 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47390 * 180.02562 * 19 18 17 40 40 H 1.08998 * 109.47086 * 300.00406 * 19 18 17 41 41 H 1.09000 * 109.46883 * 179.97438 * 23 22 20 42 42 H 1.09002 * 109.47143 * 299.99863 * 23 22 20 43 43 H 1.08993 * 109.47471 * 60.00048 * 23 22 20 44 44 H 1.08998 * 109.47222 * 300.00309 * 24 20 19 45 45 H 1.08999 * 109.47543 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9817 0.6096 -1.2754 6 6 3.6072 -0.8075 -1.3739 7 6 4.2479 -1.5759 -0.2470 8 1 4.9361 -1.0804 0.4217 9 6 3.9554 -2.9116 -0.0696 10 7 3.1176 -3.5151 -0.8842 11 14 4.7501 -3.8643 1.3269 12 1 5.6470 -2.9628 2.0936 13 1 3.6951 -4.3951 2.2272 14 1 5.5394 -4.9923 0.7702 15 6 3.4511 1.3746 -2.4117 16 1 2.3616 1.3589 -2.3832 17 6 3.9426 2.8210 -2.3268 18 6 3.3905 3.6176 -3.5105 19 6 3.8761 2.9899 -4.8186 20 6 3.3845 1.5435 -4.9035 21 1 2.2950 1.5278 -4.8755 22 8 3.8375 0.9574 -6.1256 23 6 2.9340 1.1238 -7.2200 24 6 3.9366 0.7469 -3.7198 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8484 0.5372 0.8200 31 1 3.9782 2.1724 0.1286 32 1 2.5232 -0.9022 -1.3081 33 1 3.9499 -1.2084 -2.3278 34 1 2.9122 -4.4549 -0.7596 35 1 3.5970 3.2681 -1.3947 36 1 5.0321 2.8367 -2.3552 37 1 2.3010 3.6019 -3.4825 38 1 3.7403 4.6482 -3.4498 39 1 3.4831 3.5577 -5.6620 40 1 4.9656 3.0056 -4.8466 41 1 3.3504 0.6519 -8.1099 42 1 1.9782 0.6601 -6.9758 43 1 2.7843 2.1867 -7.4092 44 1 5.0261 0.7625 -3.7478 45 1 3.5868 -0.2837 -3.7805 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226545839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:33 Heat of formation + Delta-G solvation = -88.679228 kcal Electronic energy + Delta-G solvation = -22929.915705 eV Core-core repulsion = 19754.743649 eV Total energy + Delta-G solvation = -3175.172057 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.46339 -37.88564 -36.44007 -34.62136 -32.32283 -30.49468 -29.25984 -28.46352 -26.35280 -26.13426 -25.21052 -22.91457 -22.29965 -21.42017 -20.13816 -18.82059 -16.66870 -16.04336 -15.99270 -15.72692 -15.34667 -14.95531 -14.59316 -14.31480 -14.22022 -13.94913 -13.58185 -13.24247 -12.93555 -12.45094 -12.19715 -11.84449 -11.77503 -11.63193 -11.39748 -11.17282 -11.07057 -10.92849 -10.77524 -10.69271 -10.51603 -10.40636 -10.22809 -10.16040 -9.85309 -9.59714 -9.17179 -8.94044 -8.88912 -8.20296 -6.96519 -5.81854 -3.78671 3.41623 3.48583 3.52912 3.86836 4.43854 4.58373 4.83533 4.92935 5.10739 5.23680 5.31442 5.38059 5.51206 5.53508 5.54865 5.59126 5.60286 5.67174 5.70563 5.75033 5.77865 5.81277 5.86992 5.93534 6.00079 6.10246 6.15882 6.20127 6.26542 6.36194 6.44485 6.49032 6.72920 6.82450 6.90602 7.39170 7.51307 7.82757 7.93178 7.98084 8.27283 8.42091 8.78160 9.27190 9.81834 11.29652 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.005992 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.043322 B = 4671.881108 C = 5288.318341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.342 6.342 3 C 0.023 3.977 4 C 0.062 3.938 5 N -0.527 5.527 6 C 0.178 3.822 7 C -0.491 4.491 8 H 0.057 0.943 9 C 0.058 3.942 10 N -0.897 5.897 11 Si 0.889 3.111 12 H -0.275 1.275 13 H -0.288 1.288 14 H -0.287 1.287 15 C 0.088 3.912 16 H 0.033 0.967 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.138 4.138 20 C 0.092 3.908 21 H 0.054 0.946 22 O -0.384 6.384 23 C 0.032 3.968 24 C -0.109 4.109 25 H 0.081 0.919 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.024 0.976 34 H 0.255 0.745 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.036 0.964 44 H 0.075 0.925 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 13.818 -6.050 15.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.260 6.260 3 C -0.056 4.056 4 C -0.067 4.067 5 N -0.251 5.251 6 C 0.054 3.946 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.143 4.143 10 N -0.538 5.538 11 Si 0.718 3.282 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.214 1.214 15 C -0.021 4.021 16 H 0.051 0.949 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.175 4.175 20 C 0.034 3.966 21 H 0.072 0.928 22 O -0.302 6.302 23 C -0.065 4.065 24 C -0.146 4.146 25 H 0.100 0.900 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.235 13.388 -6.110 15.068 hybrid contribution -1.131 -0.281 0.723 1.371 sum -4.366 13.107 -5.387 14.828 Atomic orbital electron populations 1.22670 0.83806 1.02222 0.98202 1.88484 1.17246 1.25712 1.94577 1.23368 0.97704 0.86002 0.98510 1.22229 0.89273 0.99620 0.95574 1.62338 1.58116 1.05607 0.99027 1.20095 0.97069 0.80444 0.97019 1.21105 1.24847 0.94188 1.12820 0.92494 1.24870 0.95430 0.97722 0.96243 1.69976 1.35368 1.10696 1.37729 0.86591 0.79045 0.79999 0.82590 1.19930 1.21432 1.21376 1.21458 0.96284 0.92641 0.91741 0.94947 1.21677 1.01637 0.94934 0.97100 1.21460 1.00314 0.98815 0.94593 1.22019 1.02142 0.95982 0.97398 1.22180 0.97470 0.92187 0.84774 0.92764 1.87936 1.45484 1.78204 1.18603 1.22732 0.93766 0.99812 0.90175 1.21655 1.02228 0.99811 0.90941 0.89999 0.95369 0.95407 0.94809 0.94188 0.88670 0.91423 0.94725 0.95788 0.93499 0.92153 0.91064 0.92495 0.91932 0.92596 0.91033 0.89983 0.94202 0.94563 0.90618 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.34 -7.29 7.60 -35.23 -0.27 -7.56 16 3 C 0.02 0.41 5.66 37.16 0.21 0.62 16 4 C 0.06 1.18 5.20 -3.82 -0.02 1.16 16 5 N -0.53 -11.19 4.62 -228.07 -1.05 -12.24 16 6 C 0.18 4.62 3.93 -4.98 -0.02 4.60 16 7 C -0.49 -13.92 8.21 -34.44 -0.28 -14.20 16 8 H 0.06 1.61 6.96 -52.49 -0.37 1.25 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 11 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 15 C 0.09 1.55 1.40 -67.71 -0.10 1.46 16 16 H 0.03 0.60 6.05 -51.93 -0.31 0.29 16 17 C -0.12 -1.65 4.94 -26.73 -0.13 -1.78 16 18 C -0.11 -1.35 5.92 -26.73 -0.16 -1.51 16 19 C -0.14 -1.74 5.54 -26.73 -0.15 -1.88 16 20 C 0.09 1.38 2.61 -26.73 -0.07 1.31 16 21 H 0.05 0.78 7.78 -51.93 -0.40 0.38 16 22 O -0.38 -5.99 10.35 -35.23 -0.36 -6.35 16 23 C 0.03 0.37 10.82 101.05 1.09 1.46 16 24 C -0.11 -1.97 4.50 -26.73 -0.12 -2.09 16 25 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.67 5.90 -51.93 -0.31 0.36 16 30 H 0.10 2.07 6.30 -51.93 -0.33 1.74 16 31 H 0.07 1.09 6.66 -51.93 -0.35 0.75 16 32 H 0.04 0.98 5.32 -51.93 -0.28 0.70 16 33 H 0.02 0.68 6.01 -51.93 -0.31 0.37 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 43 H 0.04 0.36 7.87 -51.93 -0.41 -0.05 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 45 H 0.08 1.67 6.26 -51.93 -0.33 1.34 16 LS Contribution 339.26 15.07 5.11 5.11 Total: -1.00 -31.37 339.26 -7.50 -38.87 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.92 Total: -1.00 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 1.27 Total: -7.69 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: -0.32 Total: -38.65 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.63 Total: -13.91 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.37 -7.50 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226545839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.810 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds