Wall clock time and date at job start Mon Mar 30 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00044 * 2 1 4 4 C 1.53004 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47218 * 67.15381 * 4 3 2 6 6 C 1.46900 * 110.99966 * 289.75337 * 5 4 3 7 7 C 1.50698 * 109.47106 * 300.01648 * 6 5 4 8 8 H 1.07996 * 119.99786 * 354.89388 * 7 6 5 9 9 C 1.37881 * 120.00119 * 174.89311 * 7 6 5 10 10 N 1.31518 * 119.99721 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00064 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46979 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46809 * 120.00178 * 11 9 7 14 14 H 1.48498 * 109.46913 * 240.00297 * 11 9 7 15 15 C 1.46901 * 110.99818 * 53.70515 * 5 4 3 16 16 H 1.08998 * 109.47444 * 300.00120 * 15 5 4 17 17 C 1.53000 * 109.47126 * 60.00389 * 15 5 4 18 18 C 1.52996 * 109.47047 * 179.97438 * 17 15 5 19 19 C 1.52998 * 109.47308 * 299.99592 * 18 17 15 20 20 C 1.53000 * 109.46733 * 60.00215 * 19 18 17 21 21 H 1.08998 * 109.47179 * 60.00247 * 20 19 18 22 22 O 1.42906 * 109.46987 * 179.97438 * 20 19 18 23 23 C 1.42895 * 113.99961 * 270.00067 * 22 20 19 24 24 C 1.52998 * 109.47413 * 299.99912 * 20 19 18 25 25 H 1.09000 * 109.46995 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47266 * 300.00087 * 1 2 3 27 27 H 1.09000 * 109.46718 * 60.00217 * 1 2 3 28 28 H 1.09001 * 109.47692 * 59.99840 * 3 2 1 29 29 H 1.09000 * 109.47627 * 299.99752 * 3 2 1 30 30 H 1.09003 * 109.47049 * 307.15302 * 4 3 2 31 31 H 1.09007 * 109.47243 * 187.15439 * 4 3 2 32 32 H 1.09005 * 109.46955 * 60.01547 * 6 5 4 33 33 H 1.09001 * 109.47180 * 180.02562 * 6 5 4 34 34 H 0.97004 * 119.99519 * 179.97438 * 10 9 7 35 35 H 1.09001 * 109.46942 * 299.99522 * 17 15 5 36 36 H 1.08998 * 109.47179 * 59.99569 * 17 15 5 37 37 H 1.08998 * 109.47378 * 59.99819 * 18 17 15 38 38 H 1.09009 * 109.47105 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47390 * 180.02562 * 19 18 17 40 40 H 1.08998 * 109.47086 * 300.00406 * 19 18 17 41 41 H 1.09000 * 109.46883 * 179.97438 * 23 22 20 42 42 H 1.09002 * 109.47143 * 299.99863 * 23 22 20 43 43 H 1.08993 * 109.47471 * 60.00048 * 23 22 20 44 44 H 1.08998 * 109.47222 * 300.00309 * 24 20 19 45 45 H 1.08999 * 109.47543 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9817 0.6096 -1.2754 6 6 3.6072 -0.8075 -1.3739 7 6 4.2479 -1.5759 -0.2470 8 1 4.9361 -1.0804 0.4217 9 6 3.9554 -2.9116 -0.0696 10 7 3.1176 -3.5151 -0.8842 11 14 4.7501 -3.8643 1.3269 12 1 5.6470 -2.9628 2.0936 13 1 3.6951 -4.3951 2.2272 14 1 5.5394 -4.9923 0.7702 15 6 3.4511 1.3746 -2.4117 16 1 2.3616 1.3589 -2.3832 17 6 3.9426 2.8210 -2.3268 18 6 3.3905 3.6176 -3.5105 19 6 3.8761 2.9899 -4.8186 20 6 3.3845 1.5435 -4.9035 21 1 2.2950 1.5278 -4.8755 22 8 3.8375 0.9574 -6.1256 23 6 2.9340 1.1238 -7.2200 24 6 3.9366 0.7469 -3.7198 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8484 0.5372 0.8200 31 1 3.9782 2.1724 0.1286 32 1 2.5232 -0.9022 -1.3081 33 1 3.9499 -1.2084 -2.3278 34 1 2.9122 -4.4549 -0.7596 35 1 3.5970 3.2681 -1.3947 36 1 5.0321 2.8367 -2.3552 37 1 2.3010 3.6019 -3.4825 38 1 3.7403 4.6482 -3.4498 39 1 3.4831 3.5577 -5.6620 40 1 4.9656 3.0056 -4.8466 41 1 3.3504 0.6519 -8.1099 42 1 1.9782 0.6601 -6.9758 43 1 2.7843 2.1867 -7.4092 44 1 5.0261 0.7625 -3.7478 45 1 3.5868 -0.2837 -3.7805 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226545839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:33 Heat of formation + Delta-G solvation = -110.664466 kcal Electronic energy + Delta-G solvation = -22930.869057 eV Core-core repulsion = 19754.743649 eV Total energy + Delta-G solvation = -3176.125408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.81255 -39.23714 -37.80256 -36.06596 -34.41954 -31.81865 -30.54601 -30.14144 -27.77755 -27.35590 -26.81976 -24.53608 -23.72056 -22.83984 -21.41854 -20.29081 -18.47683 -17.64320 -17.38811 -17.10579 -16.62701 -16.56410 -16.04617 -15.77959 -15.50068 -15.43323 -14.91310 -14.64052 -14.23124 -13.89713 -13.71475 -13.37381 -13.25533 -12.94021 -12.85017 -12.76440 -12.53628 -12.50326 -12.40108 -12.14366 -11.98058 -11.87170 -11.73901 -11.44726 -11.39756 -11.04868 -10.98790 -10.56035 -10.37338 -10.24247 -8.69647 -8.04746 -6.08810 1.41244 1.41675 1.54120 2.47680 2.75623 3.06785 3.29301 3.44616 3.78721 3.93959 4.07744 4.19356 4.27935 4.27994 4.31360 4.41641 4.44521 4.50895 4.53762 4.54090 4.58920 4.59911 4.62930 4.73483 4.78742 4.83483 4.84508 5.07273 5.11192 5.16132 5.21012 5.26162 5.30187 5.38738 5.53860 5.55490 5.74304 5.84906 6.26083 6.32018 6.48274 6.51250 6.86827 7.08512 7.56387 9.06749 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.005992 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.043322 B = 4671.881108 C = 5288.318341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.391 6.391 3 C 0.025 3.975 4 C 0.061 3.939 5 N -0.539 5.539 6 C 0.198 3.802 7 C -0.500 4.500 8 H 0.053 0.947 9 C 0.003 3.997 10 N -0.933 5.933 11 Si 0.956 3.044 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.091 3.909 16 H 0.027 0.973 17 C -0.108 4.108 18 C -0.107 4.107 19 C -0.131 4.131 20 C 0.096 3.904 21 H 0.059 0.941 22 O -0.414 6.414 23 C 0.025 3.975 24 C -0.105 4.105 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.015 0.985 33 H -0.013 1.013 34 H 0.256 0.744 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.040 0.960 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 16.559 -5.770 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.310 6.310 3 C -0.053 4.053 4 C -0.068 4.068 5 N -0.262 5.262 6 C 0.073 3.927 7 C -0.539 4.539 8 H 0.071 0.929 9 C -0.194 4.194 10 N -0.574 5.574 11 Si 0.782 3.218 12 H -0.190 1.190 13 H -0.209 1.209 14 H -0.210 1.210 15 C -0.017 4.017 16 H 0.045 0.955 17 C -0.146 4.146 18 C -0.145 4.145 19 C -0.169 4.169 20 C 0.038 3.962 21 H 0.077 0.923 22 O -0.333 6.333 23 C -0.071 4.071 24 C -0.143 4.143 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.032 0.968 33 H 0.005 0.995 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.565 16.158 -5.829 17.543 hybrid contribution -1.044 -1.133 0.581 1.647 sum -4.608 15.024 -5.248 16.568 Atomic orbital electron populations 1.22766 0.81866 1.02146 1.00217 1.88396 1.19627 1.28011 1.94968 1.23396 0.96329 0.85117 1.00442 1.22268 0.90904 1.00381 0.93205 1.62213 1.58979 1.03680 1.01354 1.19624 0.95328 0.83436 0.94339 1.21409 1.24558 0.94737 1.13157 0.92911 1.25709 0.96048 0.98832 0.98785 1.70114 1.36829 1.10973 1.39531 0.85537 0.78225 0.78511 0.79508 1.18971 1.20889 1.20966 1.21531 0.95856 0.94450 0.89898 0.95478 1.21637 1.01333 0.92306 0.99328 1.21455 1.00865 0.99609 0.92528 1.21974 1.01805 0.94078 0.99009 1.22112 0.97458 0.93160 0.83435 0.92278 1.87890 1.46983 1.78914 1.19546 1.22959 0.93243 1.01573 0.89303 1.21568 1.01004 0.98209 0.93506 0.91280 0.92684 0.93855 0.91970 0.92768 0.91824 0.87766 0.96784 0.99470 0.93483 0.90570 0.91652 0.91474 0.88981 0.90126 0.91677 0.88605 0.94135 0.92261 0.92419 0.94746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.12 16 2 O -0.39 -16.76 7.60 -148.98 -1.13 -17.89 16 3 C 0.02 0.85 5.66 71.98 0.41 1.26 16 4 C 0.06 2.28 5.20 86.30 0.45 2.73 16 5 N -0.54 -23.35 4.62 -875.49 -4.04 -27.39 16 6 C 0.20 10.86 3.93 85.56 0.34 11.19 16 7 C -0.50 -29.38 8.21 25.60 0.21 -29.17 16 8 H 0.05 3.07 6.96 -2.91 -0.02 3.05 16 9 C 0.00 0.19 5.46 84.66 0.46 0.65 16 10 N -0.93 -58.58 13.29 21.45 0.28 -58.29 16 11 Si 0.96 46.72 29.54 68.60 2.03 48.75 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 14 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 15 C 0.09 3.23 1.40 44.92 0.06 3.29 16 16 H 0.03 1.00 6.05 -2.39 -0.01 0.99 16 17 C -0.11 -2.82 4.94 30.59 0.15 -2.66 16 18 C -0.11 -2.12 5.92 30.59 0.18 -1.94 16 19 C -0.13 -2.95 5.54 30.59 0.17 -2.78 16 20 C 0.10 2.84 2.61 30.59 0.08 2.92 16 21 H 0.06 1.66 7.78 -2.39 -0.02 1.64 16 22 O -0.41 -12.89 10.35 -148.98 -1.54 -14.43 16 23 C 0.03 0.55 10.82 113.37 1.23 1.77 16 24 C -0.10 -3.97 4.50 30.59 0.14 -3.84 16 25 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 26 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.05 1.68 5.90 -2.39 -0.01 1.67 16 30 H 0.06 2.79 6.30 -2.39 -0.02 2.78 16 31 H 0.10 3.11 6.66 -2.38 -0.02 3.09 16 32 H 0.01 0.86 5.32 -2.38 -0.01 0.85 16 33 H -0.01 -0.77 6.01 -2.39 -0.01 -0.78 16 34 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.08 1.75 6.54 -2.39 -0.02 1.74 16 36 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.08 1.47 7.87 -2.39 -0.02 1.45 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.04 0.86 8.08 -2.39 -0.02 0.84 16 43 H 0.06 1.01 7.87 -2.39 -0.02 0.99 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.03 1.57 6.26 -2.39 -0.01 1.56 16 Total: -1.00 -71.68 339.26 1.66 -70.02 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.94 Total: 13.70 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 5.12 Total: -14.46 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -3.76 Total: -85.68 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -2.67 Total: -32.32 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -71.68 1.66 -70.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226545839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.647 kcal (2) G-P(sol) polarization free energy of solvation -71.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds