Wall clock time and date at job start Mon Mar 30 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99806 * 2 1 4 4 C 1.52998 * 109.47026 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47202 * 64.99790 * 4 3 2 6 6 C 1.42896 * 114.00121 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47540 * 180.02562 * 6 5 4 8 8 C 1.52991 * 109.47671 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47373 * 179.97438 * 8 7 6 10 10 C 1.36933 * 120.00240 * 270.00099 * 9 8 7 11 11 H 1.07997 * 120.00637 * 142.01152 * 10 9 8 12 12 C 1.38820 * 119.99728 * 322.00793 * 10 9 8 13 13 N 1.31617 * 120.00002 * 156.08926 * 12 10 9 14 14 Si 1.86802 * 120.00010 * 336.09427 * 12 10 9 15 15 H 1.48507 * 109.46917 * 95.28647 * 14 12 10 16 16 H 1.48496 * 109.46914 * 215.28529 * 14 12 10 17 17 H 1.48502 * 109.47090 * 335.29092 * 14 12 10 18 18 C 1.46507 * 120.00087 * 89.99706 * 9 8 7 19 19 C 1.54266 * 110.03254 * 242.57987 * 18 9 8 20 20 C 1.54962 * 104.16081 * 217.13647 * 19 18 9 21 21 C 1.54889 * 102.77997 * 37.88795 * 20 19 18 22 22 C 1.53870 * 110.03320 * 125.36281 * 18 9 8 23 23 H 1.08994 * 109.47317 * 59.99847 * 1 2 3 24 24 H 1.09004 * 109.46991 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47221 * 299.99691 * 1 2 3 26 26 H 1.08999 * 109.46913 * 60.00405 * 3 2 1 27 27 H 1.08994 * 109.46921 * 299.99773 * 3 2 1 28 28 H 1.09002 * 109.47472 * 304.99952 * 4 3 2 29 29 H 1.08995 * 109.47213 * 185.00095 * 4 3 2 30 30 H 1.09005 * 109.47382 * 59.99822 * 6 5 4 31 31 H 1.09005 * 109.46973 * 300.00347 * 6 5 4 32 32 H 1.09005 * 109.47220 * 59.99365 * 7 6 5 33 33 H 1.08999 * 109.47126 * 300.00389 * 7 6 5 34 34 H 1.08992 * 109.47577 * 59.99651 * 8 7 6 35 35 H 1.09005 * 109.46754 * 299.99935 * 8 7 6 36 36 H 0.96997 * 119.99896 * 180.02562 * 13 12 10 37 37 H 1.08997 * 110.01725 * 3.97135 * 18 9 8 38 38 H 1.08997 * 110.48506 * 335.78556 * 19 18 9 39 39 H 1.09006 * 110.48623 * 98.42714 * 19 18 9 40 40 H 1.09001 * 110.72050 * 279.57458 * 20 19 18 41 41 H 1.09003 * 110.92406 * 156.29988 * 20 19 18 42 42 H 1.08997 * 110.48998 * 203.40959 * 21 20 19 43 43 H 1.09000 * 110.59508 * 80.81413 * 21 20 19 44 44 H 1.09002 * 110.03461 * 238.57223 * 22 18 9 45 45 H 1.09004 * 110.03262 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4197 -1.3220 7 6 5.7268 -0.2339 -2.6617 8 6 7.2432 -0.4053 -2.7706 9 7 7.5731 -1.0317 -4.0531 10 6 7.6422 -2.3958 -4.1511 11 1 7.2803 -2.8925 -5.0392 12 6 8.1776 -3.1403 -3.1089 13 7 7.8407 -4.4041 -2.9621 14 14 9.3760 -2.3484 -1.9147 15 1 8.6389 -1.8715 -0.7170 16 1 10.3965 -3.3456 -1.5034 17 1 10.0451 -1.1985 -2.5745 18 6 7.8290 -0.1988 -5.2309 19 6 6.7775 -0.4888 -6.3218 20 6 7.5735 -0.4015 -7.6484 21 6 8.9342 -1.0399 -7.2742 22 6 9.1997 -0.5486 -5.8361 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8508 0.5686 0.8427 29 1 3.9784 2.1766 0.0902 30 1 5.7363 -0.2120 -0.5073 31 1 5.8632 1.3960 -1.2601 32 1 5.3728 0.3981 -3.4762 33 1 5.2459 -1.2101 -2.7241 34 1 7.5969 -1.0375 -1.9562 35 1 7.7245 0.5708 -2.7080 36 1 8.2144 -4.9242 -2.2337 37 1 7.8005 0.8554 -4.9556 38 1 6.3595 -1.4872 -6.1929 39 1 5.9877 0.2622 -6.2997 40 1 7.7046 0.6372 -7.9518 41 1 7.0820 -0.9732 -8.4357 42 1 9.7173 -0.6910 -7.9472 43 1 8.8672 -2.1276 -7.2995 44 1 9.8362 0.3360 -5.8553 45 1 9.6748 -1.3378 -5.2533 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234670269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:53 Heat of formation + Delta-G solvation = -83.146775 kcal Electronic energy + Delta-G solvation = -21659.999919 eV Core-core repulsion = 18485.067768 eV Total energy + Delta-G solvation = -3174.932151 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -38.42699 -37.92117 -37.10702 -34.80843 -32.12461 -31.00800 -29.65499 -27.87713 -26.91287 -26.34395 -25.01620 -22.57341 -22.40727 -20.88876 -19.91928 -18.88096 -16.99895 -16.79395 -16.20714 -15.63298 -15.45689 -15.32959 -15.10136 -15.01074 -14.27804 -13.62431 -13.39428 -13.32472 -12.71153 -12.61640 -12.40471 -12.08395 -11.97370 -11.61591 -11.45048 -11.05794 -10.93930 -10.78433 -10.62931 -10.41497 -10.38178 -10.33427 -10.25249 -9.93157 -9.77953 -9.73090 -9.60721 -9.38279 -9.29736 -8.41559 -6.72147 -5.94454 -3.33684 3.33336 3.49569 3.54874 3.69011 3.84779 4.57285 4.92168 4.97926 5.10582 5.19602 5.23722 5.30194 5.32363 5.39420 5.41212 5.48345 5.53588 5.58130 5.63913 5.67336 5.75391 6.01738 6.07369 6.12001 6.23051 6.25775 6.30594 6.43684 6.44884 6.49217 6.58043 6.61840 6.78853 6.91860 6.99412 7.05493 7.10174 7.19812 7.24229 7.51178 8.13441 8.48550 9.08266 9.79054 10.20748 11.21313 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016357 B = 0.004646 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.400533 B = 6024.787414 C = 6890.763066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.379 6.379 6 C 0.063 3.937 7 C -0.130 4.130 8 C 0.142 3.858 9 N -0.598 5.598 10 C -0.257 4.257 11 H 0.080 0.920 12 C 0.038 3.962 13 N -0.897 5.897 14 Si 0.869 3.131 15 H -0.287 1.287 16 H -0.303 1.303 17 H -0.268 1.268 18 C 0.173 3.827 19 C -0.135 4.135 20 C -0.122 4.122 21 C -0.117 4.117 22 C -0.133 4.133 23 H 0.040 0.960 24 H 0.086 0.914 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.036 0.964 36 H 0.262 0.738 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 13.043 2.413 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.299 6.299 6 C -0.014 4.014 7 C -0.170 4.170 8 C 0.016 3.984 9 N -0.319 5.319 10 C -0.386 4.386 11 H 0.097 0.903 12 C -0.162 4.162 13 N -0.538 5.538 14 Si 0.699 3.301 15 H -0.216 1.216 16 H -0.231 1.231 17 H -0.193 1.193 18 C 0.066 3.934 19 C -0.174 4.174 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.172 4.172 23 H 0.059 0.941 24 H 0.104 0.896 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.507 12.646 2.356 14.893 hybrid contribution 0.623 0.665 1.075 1.409 sum -6.884 13.311 3.431 15.373 Atomic orbital electron populations 1.22736 0.81372 1.02845 0.99588 1.88021 1.19328 1.27256 1.95289 1.22561 0.92787 0.85461 1.00446 1.22455 0.93015 0.97360 0.88755 1.87981 1.23126 1.81816 1.36936 1.22622 0.80304 0.98684 0.99775 1.22148 0.99602 1.01511 0.93759 1.21078 0.91769 0.95792 0.89784 1.44255 1.79695 1.03236 1.04689 1.18611 1.35081 0.79750 1.05121 0.90284 1.25467 0.97936 0.94827 0.98004 1.69892 1.43230 1.08763 1.31931 0.87054 0.82803 0.79051 0.81210 1.21555 1.23073 1.19303 1.21049 0.92028 0.92826 0.87498 1.22844 0.97927 1.02316 0.94308 1.22433 0.96654 0.99347 0.97604 1.22241 0.96080 1.00659 0.96485 1.22537 0.98517 1.00412 0.95775 0.94092 0.89584 0.94440 0.92227 0.92508 0.92696 0.92206 0.93631 0.94183 0.92229 0.90405 0.92835 0.94524 0.92826 0.93173 0.90315 0.93372 0.92753 0.92725 0.93339 0.91610 0.93868 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -5.40 10.67 -40.08 -0.43 -5.82 16 3 C 0.06 0.74 6.32 37.16 0.23 0.98 16 4 C 0.06 0.80 6.32 37.16 0.23 1.04 16 5 O -0.38 -6.58 10.31 -40.08 -0.41 -7.00 16 6 C 0.06 1.09 5.94 37.15 0.22 1.31 16 7 C -0.13 -2.59 5.91 -26.74 -0.16 -2.75 16 8 C 0.14 3.05 4.51 -4.05 -0.02 3.03 16 9 N -0.60 -13.86 2.02 -164.40 -0.33 -14.20 16 10 C -0.26 -6.96 8.19 -15.06 -0.12 -7.09 16 11 H 0.08 2.33 7.09 -52.49 -0.37 1.96 16 12 C 0.04 1.08 5.27 -17.43 -0.09 0.99 16 13 N -0.90 -27.26 13.97 55.49 0.78 -26.49 16 14 Si 0.87 22.01 25.19 -169.99 -4.28 17.72 16 15 H -0.29 -7.11 6.65 56.52 0.38 -6.73 16 16 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.17 3.44 3.42 -66.81 -0.23 3.21 16 19 C -0.13 -2.48 6.43 -25.03 -0.16 -2.64 16 20 C -0.12 -1.94 6.91 -24.70 -0.17 -2.11 16 21 C -0.12 -1.99 6.83 -25.07 -0.17 -2.16 16 22 C -0.13 -2.55 6.24 -25.61 -0.16 -2.71 16 23 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.05 1.27 3.44 -51.93 -0.18 1.09 16 35 H 0.04 0.70 7.91 -51.93 -0.41 0.29 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.05 0.92 7.81 -51.93 -0.41 0.52 16 38 H 0.08 1.67 6.65 -51.93 -0.35 1.33 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.80 7.17 -51.93 -0.37 1.42 16 LS Contribution 353.11 15.07 5.32 5.32 Total: -1.00 -31.08 353.11 -7.27 -38.35 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.43 Total: -0.41 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 0.52 Total: -7.49 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.44 Total: -40.69 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.84 Total: -12.82 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.28 Total: 17.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.08 -7.27 -38.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234670269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.793 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds