Wall clock time and date at job start Mon Mar 30 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99806 * 2 1 4 4 C 1.52998 * 109.47026 * 179.97438 * 3 2 1 5 5 O 1.42905 * 109.47202 * 64.99790 * 4 3 2 6 6 C 1.42896 * 114.00121 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47540 * 180.02562 * 6 5 4 8 8 C 1.52991 * 109.47671 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47373 * 179.97438 * 8 7 6 10 10 C 1.36933 * 120.00240 * 270.00099 * 9 8 7 11 11 H 1.07997 * 120.00637 * 142.01152 * 10 9 8 12 12 C 1.38820 * 119.99728 * 322.00793 * 10 9 8 13 13 N 1.31617 * 120.00002 * 156.08926 * 12 10 9 14 14 Si 1.86802 * 120.00010 * 336.09427 * 12 10 9 15 15 H 1.48507 * 109.46917 * 95.28647 * 14 12 10 16 16 H 1.48496 * 109.46914 * 215.28529 * 14 12 10 17 17 H 1.48502 * 109.47090 * 335.29092 * 14 12 10 18 18 C 1.46507 * 120.00087 * 89.99706 * 9 8 7 19 19 C 1.54266 * 110.03254 * 242.57987 * 18 9 8 20 20 C 1.54962 * 104.16081 * 217.13647 * 19 18 9 21 21 C 1.54889 * 102.77997 * 37.88795 * 20 19 18 22 22 C 1.53870 * 110.03320 * 125.36281 * 18 9 8 23 23 H 1.08994 * 109.47317 * 59.99847 * 1 2 3 24 24 H 1.09004 * 109.46991 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47221 * 299.99691 * 1 2 3 26 26 H 1.08999 * 109.46913 * 60.00405 * 3 2 1 27 27 H 1.08994 * 109.46921 * 299.99773 * 3 2 1 28 28 H 1.09002 * 109.47472 * 304.99952 * 4 3 2 29 29 H 1.08995 * 109.47213 * 185.00095 * 4 3 2 30 30 H 1.09005 * 109.47382 * 59.99822 * 6 5 4 31 31 H 1.09005 * 109.46973 * 300.00347 * 6 5 4 32 32 H 1.09005 * 109.47220 * 59.99365 * 7 6 5 33 33 H 1.08999 * 109.47126 * 300.00389 * 7 6 5 34 34 H 1.08992 * 109.47577 * 59.99651 * 8 7 6 35 35 H 1.09005 * 109.46754 * 299.99935 * 8 7 6 36 36 H 0.96997 * 119.99896 * 180.02562 * 13 12 10 37 37 H 1.08997 * 110.01725 * 3.97135 * 18 9 8 38 38 H 1.08997 * 110.48506 * 335.78556 * 19 18 9 39 39 H 1.09006 * 110.48623 * 98.42714 * 19 18 9 40 40 H 1.09001 * 110.72050 * 279.57458 * 20 19 18 41 41 H 1.09003 * 110.92406 * 156.29988 * 20 19 18 42 42 H 1.08997 * 110.48998 * 203.40959 * 21 20 19 43 43 H 1.09000 * 110.59508 * 80.81413 * 21 20 19 44 44 H 1.09002 * 110.03461 * 238.57223 * 22 18 9 45 45 H 1.09004 * 110.03262 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4197 -1.3220 7 6 5.7268 -0.2339 -2.6617 8 6 7.2432 -0.4053 -2.7706 9 7 7.5731 -1.0317 -4.0531 10 6 7.6422 -2.3958 -4.1511 11 1 7.2803 -2.8925 -5.0392 12 6 8.1776 -3.1403 -3.1089 13 7 7.8407 -4.4041 -2.9621 14 14 9.3760 -2.3484 -1.9147 15 1 8.6389 -1.8715 -0.7170 16 1 10.3965 -3.3456 -1.5034 17 1 10.0451 -1.1985 -2.5745 18 6 7.8290 -0.1988 -5.2309 19 6 6.7775 -0.4888 -6.3218 20 6 7.5735 -0.4015 -7.6484 21 6 8.9342 -1.0399 -7.2742 22 6 9.1997 -0.5486 -5.8361 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8508 0.5686 0.8427 29 1 3.9784 2.1766 0.0902 30 1 5.7363 -0.2120 -0.5073 31 1 5.8632 1.3960 -1.2601 32 1 5.3728 0.3981 -3.4762 33 1 5.2459 -1.2101 -2.7241 34 1 7.5969 -1.0375 -1.9562 35 1 7.7245 0.5708 -2.7080 36 1 8.2144 -4.9242 -2.2337 37 1 7.8005 0.8554 -4.9556 38 1 6.3595 -1.4872 -6.1929 39 1 5.9877 0.2622 -6.2997 40 1 7.7046 0.6372 -7.9518 41 1 7.0820 -0.9732 -8.4357 42 1 9.7173 -0.6910 -7.9472 43 1 8.8672 -2.1276 -7.2995 44 1 9.8362 0.3360 -5.8553 45 1 9.6748 -1.3378 -5.2533 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234670269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:52 Heat of formation + Delta-G solvation = -103.074245 kcal Electronic energy + Delta-G solvation = -21660.864039 eV Core-core repulsion = 18485.067768 eV Total energy + Delta-G solvation = -3175.796271 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 271.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.68721 -39.32421 -38.23254 -36.44901 -34.02570 -32.62536 -30.81414 -29.34421 -28.51409 -27.26102 -26.70105 -24.18606 -23.50861 -22.49973 -21.32368 -20.59302 -18.51980 -17.84472 -17.67312 -17.27573 -16.96030 -16.51812 -16.30615 -16.17981 -15.87444 -15.08339 -14.93452 -14.84478 -14.24288 -14.03030 -13.86820 -13.74743 -13.26689 -13.04352 -12.67692 -12.55872 -12.45739 -12.19552 -12.11866 -11.95199 -11.91568 -11.78099 -11.71971 -11.66622 -11.37646 -11.22902 -11.14778 -10.65269 -10.56588 -10.51542 -8.65688 -8.14663 -5.49885 1.30066 1.41209 1.52494 2.45876 2.64601 2.88009 3.12757 3.40068 3.96849 4.01350 4.04537 4.06150 4.21296 4.25155 4.31501 4.43637 4.45086 4.49318 4.54564 4.55229 4.59108 4.66373 4.71137 4.76978 4.78970 4.80398 4.84482 4.93178 4.95213 4.97843 5.19284 5.22720 5.27337 5.32025 5.42380 5.58242 5.64144 5.67403 6.03147 6.19899 6.28709 6.34616 7.08763 7.73375 8.14081 9.05830 Molecular weight = 271.19amu Principal moments of inertia in cm(-1) A = 0.016357 B = 0.004646 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.400533 B = 6024.787414 C = 6890.763066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.061 3.939 4 C 0.052 3.948 5 O -0.407 6.407 6 C 0.070 3.930 7 C -0.118 4.118 8 C 0.137 3.863 9 N -0.608 5.608 10 C -0.231 4.231 11 H 0.038 0.962 12 C -0.021 4.021 13 N -0.951 5.951 14 Si 0.932 3.068 15 H -0.277 1.277 16 H -0.313 1.313 17 H -0.253 1.253 18 C 0.163 3.837 19 C -0.133 4.133 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.133 4.133 23 H 0.047 0.953 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.031 0.969 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.259 0.741 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.072 0.928 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 17.040 2.540 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.015 4.015 4 C -0.024 4.024 5 O -0.327 6.327 6 C -0.007 4.007 7 C -0.158 4.158 8 C 0.012 3.988 9 N -0.330 5.330 10 C -0.361 4.361 11 H 0.056 0.944 12 C -0.217 4.217 13 N -0.596 5.596 14 Si 0.761 3.239 15 H -0.204 1.204 16 H -0.242 1.242 17 H -0.177 1.177 18 C 0.057 3.943 19 C -0.172 4.172 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.172 4.172 23 H 0.066 0.934 24 H 0.105 0.895 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.055 0.945 44 H 0.090 0.910 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.303 16.698 2.475 18.392 hybrid contribution 0.431 -0.536 0.965 1.185 sum -6.872 16.162 3.439 17.896 Atomic orbital electron populations 1.22906 0.79556 1.03520 1.01033 1.87961 1.21562 1.29062 1.95618 1.22738 0.91712 0.84861 1.02206 1.22797 0.94302 0.98538 0.86810 1.87933 1.22870 1.82697 1.39227 1.22464 0.81000 0.99888 0.97356 1.21915 0.98212 0.99537 0.96177 1.21168 0.92879 0.96710 0.88061 1.44386 1.80058 1.02077 1.06492 1.18381 1.32749 0.81852 1.03151 0.94387 1.26034 0.99874 0.95269 1.00533 1.70029 1.45357 1.10686 1.33536 0.86012 0.80205 0.78145 0.79520 1.20441 1.24232 1.17663 1.21357 0.92800 0.93616 0.86487 1.22759 0.98363 1.00342 0.95775 1.22401 0.95042 1.01248 0.96172 1.22224 0.97975 0.99103 0.96045 1.22514 0.98120 1.00343 0.96268 0.93394 0.89465 0.92153 0.88823 0.92193 0.93165 0.88988 0.94554 0.90728 0.91416 0.94975 0.95043 0.90892 0.93199 0.90307 0.94515 0.91683 0.89555 0.91906 0.90322 0.94464 0.90952 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.42 -11.64 10.67 -144.34 -1.54 -13.18 16 3 C 0.06 1.29 6.32 71.98 0.45 1.74 16 4 C 0.05 1.24 6.32 71.98 0.45 1.70 16 5 O -0.41 -13.64 10.31 -144.34 -1.49 -15.13 16 6 C 0.07 2.28 5.94 71.98 0.43 2.71 16 7 C -0.12 -4.66 5.91 30.59 0.18 -4.48 16 8 C 0.14 5.71 4.51 86.38 0.39 6.10 16 9 N -0.61 -28.13 2.02 -674.03 -1.36 -29.49 16 10 C -0.23 -13.06 8.19 84.04 0.69 -12.37 16 11 H 0.04 2.43 7.09 -2.91 -0.02 2.41 16 12 C -0.02 -1.27 5.27 84.86 0.45 -0.82 16 13 N -0.95 -60.94 13.97 21.65 0.30 -60.64 16 14 Si 0.93 46.51 25.19 68.60 1.73 48.24 16 15 H -0.28 -13.22 6.65 99.48 0.66 -12.56 16 16 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 17 H -0.25 -11.82 7.11 99.48 0.71 -11.12 16 18 C 0.16 6.17 3.42 45.71 0.16 6.33 16 19 C -0.13 -4.76 6.43 31.69 0.20 -4.56 16 20 C -0.11 -3.22 6.91 31.91 0.22 -3.00 16 21 C -0.12 -3.74 6.83 31.67 0.22 -3.52 16 22 C -0.13 -4.86 6.24 31.32 0.20 -4.66 16 23 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 24 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.07 2.51 8.14 -2.38 -0.02 2.50 16 33 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.03 1.46 3.44 -2.39 -0.01 1.45 16 35 H 0.07 2.52 7.91 -2.38 -0.02 2.50 16 36 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 37 H 0.08 2.56 7.81 -2.39 -0.02 2.54 16 38 H 0.04 1.61 6.65 -2.39 -0.02 1.59 16 39 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.04 1.85 7.17 -2.39 -0.02 1.83 16 Total: -1.00 -71.87 353.11 3.80 -68.07 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.88 Total: 15.24 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 5.28 Total: -13.12 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -1.06 Total: -90.13 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -3.03 Total: -28.31 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.73 Total: 48.24 kcal Total: -71.87 3.80 -68.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234670269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.002 kcal (2) G-P(sol) polarization free energy of solvation -71.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds