Wall clock time and date at job start Mon Mar 30 2020 06:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99860 * 2 1 4 4 H 1.48505 * 109.47224 * 269.99738 * 3 2 1 5 5 H 1.48500 * 109.47256 * 29.99573 * 3 2 1 6 6 H 1.48498 * 109.47259 * 149.99830 * 3 2 1 7 7 C 1.37869 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00211 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.46889 * 299.99177 * 9 7 2 11 11 N 1.46897 * 109.47370 * 59.99426 * 9 7 2 12 12 C 1.50707 * 109.47399 * 180.02562 * 9 7 2 13 13 C 1.38009 * 120.44550 * 265.02072 * 12 9 7 14 14 N 1.31938 * 120.84171 * 179.97438 * 13 12 9 15 15 C 1.31990 * 121.86415 * 359.97295 * 14 13 12 16 16 C 1.38029 * 120.80860 * 359.74366 * 15 14 13 17 17 Br 1.89103 * 120.45630 * 180.28506 * 16 15 14 18 18 C 1.39206 * 120.44999 * 84.99428 * 12 9 7 19 19 O 1.35753 * 120.85005 * 0.02562 * 18 12 9 20 20 H 0.97004 * 120.00212 * 0.02562 * 1 2 3 21 21 H 1.00900 * 110.99994 * 60.00424 * 11 9 7 22 22 H 1.00904 * 110.99873 * 183.95272 * 11 9 7 23 23 H 1.08000 * 119.58114 * 359.97406 * 13 12 9 24 24 H 1.08003 * 119.59024 * 180.02562 * 15 14 13 25 25 H 0.96700 * 114.00170 * 90.00023 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 7 0.4068 -2.5772 -1.1991 12 6 2.2303 -3.6446 0.0018 13 6 2.6072 -4.2438 -1.1829 14 7 3.4643 -5.2468 -1.1910 15 6 3.9956 -5.7182 -0.0785 16 6 3.6741 -5.1692 1.1464 17 35 4.4475 -5.8472 2.7333 18 6 2.7674 -4.1123 1.1979 19 8 2.4214 -3.5490 2.3836 20 1 -0.4851 0.8401 -0.0004 21 1 0.9651 -2.5260 -2.0380 22 1 -0.1571 -3.4139 -1.1906 23 1 2.1952 -3.8871 -2.1154 24 1 4.6940 -6.5406 -0.1278 25 1 1.6525 -3.9579 2.8038 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238597960.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:30 Heat of formation + Delta-G solvation = 1.331060 kcal Electronic energy + Delta-G solvation = -13530.383081 eV Core-core repulsion = 10976.637354 eV Total energy + Delta-G solvation = -2553.745728 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.990 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.20167 -37.00334 -35.07457 -32.25631 -31.71770 -29.79139 -28.92368 -26.25337 -23.59794 -22.83192 -20.43488 -18.42881 -16.78382 -16.47063 -15.74437 -14.94413 -14.36752 -14.15562 -13.98127 -13.47922 -13.15615 -12.43444 -12.29557 -11.47108 -11.09719 -10.88396 -10.86225 -10.50401 -10.24522 -10.04810 -9.54536 -9.27111 -8.79597 -8.52433 -8.33795 -7.30888 -5.95626 -4.10320 1.13680 1.47251 1.71308 3.31387 3.38190 3.42703 3.91109 4.27722 4.45529 4.67482 5.14913 5.21369 5.29876 5.62750 5.93436 5.99562 6.13469 6.39970 6.81185 7.22157 7.81790 7.85222 8.04104 8.13240 8.45176 8.81532 9.00979 9.58264 11.08742 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.029594 B = 0.006565 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.916978 B = 4263.979052 C = 4724.649093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.086 3.914 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.052 0.948 9 C 0.267 3.733 10 H 0.055 0.945 11 N -0.809 5.809 12 C -0.141 4.141 13 C 0.108 3.892 14 N -0.483 5.483 15 C 0.112 3.888 16 C -0.174 4.174 17 Br -0.044 7.044 18 C 0.178 3.822 19 O -0.465 6.465 20 H 0.257 0.743 21 H 0.320 0.680 22 H 0.300 0.700 23 H 0.160 0.840 24 H 0.157 0.843 25 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 -12.558 3.944 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.121 4.121 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.156 3.844 10 H 0.072 0.928 11 N -0.336 5.336 12 C -0.147 4.147 13 C -0.049 4.049 14 N -0.192 5.192 15 C -0.047 4.047 16 C -0.257 4.257 17 Br 0.040 6.960 18 C 0.122 3.878 19 O -0.274 6.274 20 H 0.067 0.933 21 H 0.133 0.867 22 H 0.111 0.889 23 H 0.177 0.823 24 H 0.175 0.825 25 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 5.845 -12.001 3.900 13.906 hybrid contribution 0.338 0.319 0.384 0.603 sum 6.183 -11.681 4.284 13.893 Atomic orbital electron populations 1.70087 1.05644 1.25926 1.46434 1.24894 0.94680 0.98564 0.93967 0.86698 0.80043 0.83698 0.78106 1.20638 1.21165 1.19980 1.20661 0.92076 0.88925 1.54743 0.92991 1.18087 0.87023 0.88022 0.91230 0.92761 1.59164 1.27947 1.42191 1.04305 1.23305 1.00293 0.99231 0.91828 1.22671 0.92889 0.91144 0.98161 1.67761 1.09445 1.12573 1.29458 1.22492 0.97898 0.98504 0.85801 1.23537 1.05942 1.01985 0.94187 1.96624 1.81991 1.85421 1.31980 1.18376 0.93181 0.89130 0.87125 1.84848 1.51669 1.59099 1.31818 0.93310 0.86690 0.88912 0.82321 0.82535 0.75218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.78 12.77 55.43 0.71 -23.07 15 2 C 0.09 2.34 5.39 -17.82 -0.10 2.24 15 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 15 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.53 -14.00 8.71 -34.44 -0.30 -14.30 15 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 15 9 C 0.27 6.15 2.62 -70.02 -0.18 5.97 15 10 H 0.05 1.36 7.77 -51.92 -0.40 0.96 15 11 N -0.81 -17.41 8.14 -6.65 -0.05 -17.46 15 12 C -0.14 -2.78 5.01 -104.34 -0.52 -3.31 15 13 C 0.11 1.95 10.43 -17.59 -0.18 1.77 15 14 N -0.48 -8.37 10.36 -13.30 -0.14 -8.51 15 15 C 0.11 1.77 10.94 -17.56 -0.19 1.58 15 16 C -0.17 -2.85 6.26 -39.24 -0.25 -3.09 15 17 Br -0.04 -0.61 33.28 -68.01 -2.26 -2.87 15 18 C 0.18 3.28 6.73 -38.81 -0.26 3.02 15 19 O -0.46 -8.30 12.22 -18.97 -0.23 -8.53 15 20 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 21 H 0.32 6.49 7.23 -39.29 -0.28 6.21 15 22 H 0.30 5.64 9.06 -39.29 -0.36 5.28 15 23 H 0.16 2.65 6.31 -52.49 -0.33 2.32 15 24 H 0.16 2.00 8.06 -52.48 -0.42 1.58 15 25 H 0.39 5.13 9.06 45.56 0.41 5.55 15 LS Contribution 247.26 15.07 3.73 3.73 Total: -1.00 -29.78 247.26 -6.18 -35.97 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -0.93 Total: 10.72 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.98 Total: -6.13 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.52 Total: -49.04 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.23 Total: -8.53 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -2.26 Total: -2.87 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.78 -6.18 -35.97 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238597960.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.297 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds