Wall clock time and date at job start Mon Mar 30 2020 06:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48496 * 109.47474 * 270.00074 * 3 2 1 5 5 H 1.48504 * 109.47121 * 30.00196 * 3 2 1 6 6 H 1.48499 * 109.47026 * 150.00039 * 3 2 1 7 7 C 1.37875 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00416 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99955 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46953 * 60.00279 * 9 7 2 11 11 N 1.46893 * 109.47176 * 300.00819 * 9 7 2 12 12 C 1.50697 * 109.47178 * 180.02562 * 9 7 2 13 13 C 1.38015 * 120.44721 * 99.72126 * 12 9 7 14 14 N 1.31942 * 120.84198 * 179.77094 * 13 12 9 15 15 C 1.31981 * 121.86352 * 0.49915 * 14 13 12 16 16 C 1.38025 * 120.81408 * 359.77043 * 15 14 13 17 17 Br 1.89102 * 120.46322 * 180.02562 * 16 15 14 18 18 C 1.39206 * 120.45068 * 280.00297 * 12 9 7 19 19 O 1.35751 * 120.85142 * 0.02562 * 18 12 9 20 20 H 0.97003 * 119.99476 * 359.97438 * 1 2 3 21 21 H 1.00899 * 110.99958 * 299.99574 * 11 9 7 22 22 H 1.00900 * 111.00360 * 63.94938 * 11 9 7 23 23 H 1.08004 * 119.58036 * 0.03136 * 13 12 9 24 24 H 1.07997 * 119.59291 * 179.74674 * 15 14 13 25 25 H 0.96694 * 114.00285 * 89.99593 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1991 12 6 2.2302 -3.6446 -0.0005 13 6 2.5319 -4.3068 1.1722 14 7 3.3847 -5.3135 1.1804 15 6 3.9895 -5.7233 0.0812 16 6 3.7455 -5.1096 -1.1308 17 35 4.6171 -5.7053 -2.6997 18 6 2.8471 -4.0454 -1.1823 19 8 2.5811 -3.4152 -2.3549 20 1 -0.4849 0.8401 0.0004 21 1 0.9650 -2.5260 2.0380 22 1 -0.3006 -1.8576 1.1909 23 1 2.0609 -3.9996 2.0943 24 1 4.6842 -6.5487 0.1308 25 1 3.1654 -2.6676 -2.5410 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238623827.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:33 Heat of formation + Delta-G solvation = -8.606595 kcal Electronic energy + Delta-G solvation = -13551.799937 eV Core-core repulsion = 10997.623280 eV Total energy + Delta-G solvation = -2554.176657 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.990 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.06334 -36.86886 -35.12860 -32.26041 -31.69535 -29.70570 -28.85029 -26.26783 -23.66624 -22.72681 -20.38207 -18.28452 -16.75579 -16.64407 -15.67397 -15.06637 -14.24437 -14.09292 -13.93965 -13.14929 -12.82555 -12.74575 -12.01024 -11.49583 -11.16573 -11.04834 -10.92431 -10.55122 -10.24344 -10.19466 -9.95226 -9.13523 -8.84968 -8.70211 -8.32765 -7.39953 -6.25354 -4.43848 1.28003 1.59219 1.79873 3.12398 3.21027 3.23286 4.01983 4.21067 4.46439 4.81108 4.96652 5.28589 5.33728 5.78826 6.06604 6.16014 6.26201 6.68682 6.95491 7.45635 7.55620 7.86423 7.96747 8.25412 8.48142 8.72564 8.92979 9.29039 10.72876 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.029293 B = 0.006677 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.640670 B = 4192.208236 C = 4716.926270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.072 3.928 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.551 4.551 8 H 0.053 0.947 9 C 0.249 3.751 10 H 0.062 0.938 11 N -0.852 5.852 12 C -0.095 4.095 13 C 0.124 3.876 14 N -0.487 5.487 15 C 0.112 3.888 16 C -0.176 4.176 17 Br -0.047 7.047 18 C 0.174 3.826 19 O -0.474 6.474 20 H 0.268 0.732 21 H 0.312 0.688 22 H 0.360 0.640 23 H 0.166 0.834 24 H 0.156 0.844 25 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.016 -8.211 -3.256 11.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.132 4.132 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.591 4.591 8 H 0.072 0.928 9 C 0.138 3.862 10 H 0.079 0.921 11 N -0.382 5.382 12 C -0.099 4.099 13 C -0.032 4.032 14 N -0.197 5.197 15 C -0.047 4.047 16 C -0.258 4.258 17 Br 0.037 6.963 18 C 0.119 3.881 19 O -0.285 6.285 20 H 0.078 0.922 21 H 0.121 0.879 22 H 0.178 0.822 23 H 0.183 0.817 24 H 0.173 0.827 25 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 7.669 -9.854 -3.388 12.938 hybrid contribution 0.852 2.886 -0.343 3.029 sum 8.521 -6.968 -3.731 11.622 Atomic orbital electron populations 1.69730 1.05890 1.27549 1.49343 1.24992 0.94946 0.99345 0.93940 0.86487 0.79790 0.82759 0.78375 1.20374 1.20971 1.19868 1.21654 0.93320 0.90755 1.53328 0.92834 1.17845 0.88808 0.87088 0.92416 0.92051 1.59541 1.18441 1.56430 1.03828 1.21958 0.98396 0.98205 0.91375 1.22717 0.92289 0.89631 0.98563 1.67800 1.08727 1.13922 1.29203 1.22472 0.97778 0.98413 0.86069 1.23444 1.04040 1.04168 0.94194 1.96605 1.77283 1.88608 1.33832 1.18329 0.92126 0.91357 0.86335 1.84652 1.60287 1.48798 1.34770 0.92173 0.87861 0.82246 0.81697 0.82668 0.74313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.13 11.54 55.43 0.64 -22.49 15 2 C 0.07 1.80 5.38 -17.82 -0.10 1.71 15 3 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 15 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 7 C -0.55 -13.65 8.71 -34.44 -0.30 -13.95 15 8 H 0.05 1.33 7.74 -52.49 -0.41 0.93 15 9 C 0.25 5.83 2.66 -70.02 -0.19 5.64 15 10 H 0.06 1.63 7.93 -51.93 -0.41 1.22 15 11 N -0.85 -18.97 8.68 -6.65 -0.06 -19.03 15 12 C -0.10 -1.98 5.05 -104.35 -0.53 -2.50 15 13 C 0.12 2.37 10.42 -17.59 -0.18 2.19 15 14 N -0.49 -8.80 10.36 -13.31 -0.14 -8.93 15 15 C 0.11 1.83 10.94 -17.57 -0.19 1.64 15 16 C -0.18 -2.98 6.26 -39.24 -0.25 -3.23 15 17 Br -0.05 -0.67 33.28 -68.01 -2.26 -2.93 15 18 C 0.17 3.33 6.73 -38.80 -0.26 3.07 15 19 O -0.47 -8.76 12.32 -18.96 -0.23 -8.99 15 20 H 0.27 6.72 8.31 -40.82 -0.34 6.38 15 21 H 0.31 6.45 7.30 -39.29 -0.29 6.17 15 22 H 0.36 8.66 7.08 -39.29 -0.28 8.38 15 23 H 0.17 2.97 6.26 -52.48 -0.33 2.64 15 24 H 0.16 2.06 8.06 -52.49 -0.42 1.64 15 25 H 0.40 6.14 9.06 45.56 0.41 6.55 15 LS Contribution 244.91 15.07 3.69 3.69 Total: -1.00 -26.45 244.91 -6.23 -32.68 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -0.86 Total: 16.72 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.44 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.44 Total: -50.45 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.23 Total: -8.99 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -2.26 Total: -2.93 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -26.45 -6.23 -32.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238623827.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.073 kcal (2) G-P(sol) polarization free energy of solvation -26.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds