Wall clock time and date at job start Mon Mar 30 2020 06:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86803 * 119.99327 * 2 1 4 4 H 1.48497 * 109.47205 * 269.99363 * 3 2 1 5 5 H 1.48501 * 109.47402 * 29.99897 * 3 2 1 6 6 H 1.48504 * 109.46662 * 149.99860 * 3 2 1 7 7 C 1.38648 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00450 * 0.02562 * 7 2 1 9 9 O 1.34826 * 119.99499 * 180.02562 * 7 2 1 10 10 C 1.35761 * 116.99811 * 185.06690 * 9 7 2 11 11 C 1.38878 * 120.07186 * 354.39836 * 10 9 7 12 12 C 1.38088 * 119.93956 * 180.02562 * 11 10 9 13 13 C 1.38328 * 120.08952 * 359.71980 * 12 11 10 14 14 C 1.38272 * 120.14373 * 0.55505 * 13 12 11 15 15 C 1.50693 * 119.96978 * 179.72404 * 14 13 12 16 16 O 1.42899 * 109.47345 * 359.72598 * 15 14 13 17 17 C 1.38200 * 120.05703 * 359.44725 * 14 13 12 18 18 Br 1.89102 * 120.04205 * 180.25293 * 17 14 13 19 19 H 0.97004 * 120.00579 * 0.02562 * 1 2 3 20 20 H 1.07997 * 120.02832 * 359.97438 * 11 10 9 21 21 H 1.08005 * 119.95616 * 180.02562 * 12 11 10 22 22 H 1.07999 * 119.92967 * 180.29778 * 13 12 11 23 23 H 1.08997 * 109.47564 * 239.72262 * 15 14 13 24 24 H 1.09011 * 109.47342 * 119.72567 * 15 14 13 25 25 H 0.96699 * 114.00165 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4468 2.6528 0.7000 6 1 3.5470 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4690 -2.1360 0.0005 9 8 3.3571 -1.2006 0.0011 10 6 3.9736 -2.4054 -0.1053 11 6 3.2239 -3.5744 -0.0912 12 6 3.8538 -4.7985 -0.1990 13 6 5.2297 -4.8615 -0.3268 14 6 5.9802 -3.7002 -0.3355 15 6 7.4794 -3.7738 -0.4687 16 8 7.8827 -5.1414 -0.5632 17 6 5.3560 -2.4719 -0.2280 18 35 6.3822 -0.8836 -0.2472 19 1 -0.4851 0.8400 -0.0004 20 1 2.1493 -3.5261 0.0049 21 1 3.2710 -5.7077 -0.1884 22 1 5.7193 -5.8201 -0.4157 23 1 7.9447 -3.3173 0.4049 24 1 7.7911 -3.2402 -1.3668 25 1 8.8378 -5.2646 -0.6518 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238727232.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:54 Heat of formation + Delta-G solvation = -48.384565 kcal Electronic energy + Delta-G solvation = -13290.581634 eV Core-core repulsion = 10702.387324 eV Total energy + Delta-G solvation = -2588.194310 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.983 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.42880 -37.51509 -35.94724 -32.51441 -31.95402 -30.08076 -28.40793 -26.00554 -24.93497 -21.65799 -20.76536 -17.84868 -17.32567 -17.17970 -15.16525 -14.95157 -14.85693 -14.07029 -14.05218 -13.91405 -13.04288 -12.49033 -12.40872 -11.79741 -11.73250 -11.09484 -10.89322 -10.73509 -10.29346 -10.23639 -10.10380 -9.55792 -9.49308 -8.92985 -8.12829 -7.47377 -6.50282 -4.17741 1.71833 2.09964 2.32950 3.20240 3.24897 3.42150 4.14068 4.20883 4.23615 4.79733 5.00885 5.19582 5.39741 5.57186 5.65571 5.81864 5.98980 6.34175 6.40669 6.85555 6.92229 7.10950 7.40757 7.64087 7.65788 7.90818 8.84013 9.40942 10.56247 Molecular weight = 271.98amu Principal moments of inertia in cm(-1) A = 0.026770 B = 0.008913 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.707564 B = 3140.750230 C = 4168.446852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.070 3.930 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.393 4.393 8 H 0.109 0.891 9 O -0.195 6.195 10 C 0.181 3.819 11 C -0.215 4.215 12 C -0.063 4.063 13 C -0.179 4.179 14 C -0.026 4.026 15 C 0.118 3.882 16 O -0.567 6.567 17 C -0.162 4.162 18 Br -0.068 7.068 19 H 0.281 0.719 20 H 0.141 0.859 21 H 0.118 0.882 22 H 0.127 0.873 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.716 -4.803 -0.801 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.174 1.174 7 C -0.469 4.469 8 H 0.126 0.874 9 O -0.098 6.098 10 C 0.126 3.874 11 C -0.235 4.235 12 C -0.082 4.082 13 C -0.198 4.198 14 C -0.029 4.029 15 C 0.041 3.959 16 O -0.372 6.372 17 C -0.242 4.242 18 Br 0.017 6.983 19 H 0.092 0.908 20 H 0.158 0.842 21 H 0.136 0.864 22 H 0.144 0.856 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 13.303 -3.902 -0.727 13.883 hybrid contribution 0.374 0.456 -0.047 0.592 sum 13.677 -3.447 -0.773 14.126 Atomic orbital electron populations 1.69640 1.05624 1.28768 1.46900 1.24438 0.94972 0.98895 0.95146 0.86280 0.80864 0.81289 0.79413 1.19610 1.20705 1.17444 1.20793 0.76589 0.96809 1.52667 0.87402 1.83659 1.22741 1.24738 1.78675 1.18543 0.89808 0.86406 0.92687 1.21303 1.01319 0.91329 1.09513 1.20978 0.94327 0.96962 0.95939 1.20494 0.93232 0.97389 1.08707 1.18981 0.93913 0.91431 0.98529 1.20932 0.91814 0.82662 1.00492 1.86459 1.28004 1.25675 1.97071 1.20318 0.91592 0.90583 1.21726 1.96487 1.69839 1.33934 1.98071 0.90845 0.84153 0.86422 0.85558 0.91974 0.91959 0.77577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.78 13.96 55.48 0.77 -24.00 15 2 C 0.07 1.94 5.49 -17.52 -0.10 1.84 15 3 Si 0.90 21.54 28.62 -169.99 -4.86 16.68 15 4 H -0.27 -6.42 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.25 -6.07 7.11 56.52 0.40 -5.67 15 7 C -0.39 -10.85 9.95 30.88 0.31 -10.55 15 8 H 0.11 3.01 5.44 -52.49 -0.29 2.73 15 9 O -0.19 -5.06 7.93 0.03 0.00 -5.05 15 10 C 0.18 4.18 6.64 -39.08 -0.26 3.92 15 11 C -0.21 -4.55 9.17 -39.40 -0.36 -4.91 15 12 C -0.06 -1.14 10.04 -39.60 -0.40 -1.54 15 13 C -0.18 -3.14 9.38 -39.54 -0.37 -3.51 15 14 C -0.03 -0.47 5.88 -104.63 -0.62 -1.09 15 15 C 0.12 1.66 6.26 36.00 0.23 1.88 15 16 O -0.57 -7.04 12.13 -35.23 -0.43 -7.47 15 17 C -0.16 -3.31 6.24 -39.33 -0.25 -3.55 15 18 Br -0.07 -1.26 31.95 -68.01 -2.17 -3.44 15 19 H 0.28 7.39 8.31 -40.82 -0.34 7.05 15 20 H 0.14 3.06 5.64 -52.49 -0.30 2.76 15 21 H 0.12 1.75 8.06 -52.48 -0.42 1.33 15 22 H 0.13 2.03 7.00 -52.49 -0.37 1.66 15 23 H 0.06 0.81 8.07 -51.93 -0.42 0.39 15 24 H 0.06 0.81 8.07 -51.92 -0.42 0.39 15 25 H 0.38 2.62 9.12 45.56 0.42 3.03 15 LS Contribution 244.66 15.07 3.69 3.69 Total: -1.00 -29.81 244.66 -5.74 -35.55 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -0.93 Total: 1.55 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -1.81 Total: -17.50 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.77 Total: -24.00 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.43 Total: -12.52 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.86 Total: 16.68 kcal Atomic # 35 Polarization: -1.26 SS G_CDS: -2.17 Total: -3.44 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -29.81 -5.74 -35.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238727232.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.833 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds