Wall clock time and date at job start Mon Mar 30 2020 06:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76198 * 100.00002 * 2 1 4 4 C 1.41673 * 120.30723 * 90.00229 * 3 2 1 5 5 C 1.40965 * 120.31409 * 359.97195 * 4 3 2 6 6 H 1.07998 * 120.00453 * 329.84706 * 5 4 3 7 7 C 1.39902 * 119.99593 * 149.84246 * 5 4 3 8 8 N 1.30902 * 120.00039 * 161.99656 * 7 5 4 9 9 Si 1.86797 * 120.00338 * 341.99672 * 7 5 4 10 10 H 1.48500 * 109.47308 * 95.39363 * 9 7 5 11 11 H 1.48500 * 109.47389 * 215.39545 * 9 7 5 12 12 H 1.48501 * 109.47085 * 335.39468 * 9 7 5 13 13 C 1.40717 * 119.36942 * 179.97438 * 4 3 2 14 14 C 1.36440 * 119.95586 * 359.97438 * 13 4 3 15 15 C 1.38928 * 120.63225 * 0.02562 * 14 13 4 16 16 C 1.38094 * 120.63986 * 0.25107 * 15 14 13 17 17 S 1.76204 * 119.99175 * 179.74486 * 16 15 14 18 18 C 1.81401 * 104.44813 * 115.00538 * 17 16 15 19 19 O 1.42102 * 104.27622 * 231.07746 * 17 16 15 20 20 O 1.42102 * 104.27734 * 358.93133 * 17 16 15 21 21 H 1.08997 * 109.47069 * 59.99717 * 1 2 3 22 22 H 1.08994 * 109.46914 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46900 * 299.99648 * 1 2 3 24 24 H 0.96997 * 120.00136 * 179.97438 * 8 7 5 25 25 H 1.07995 * 120.02259 * 179.97438 * 13 4 3 26 26 H 1.08005 * 119.68627 * 179.97438 * 14 13 4 27 27 H 1.08002 * 119.68068 * 179.97438 * 15 14 13 28 28 H 1.08997 * 109.47391 * 60.00003 * 18 17 16 29 29 H 1.08993 * 109.46669 * 180.02562 * 18 17 16 30 30 H 1.09000 * 109.46598 * 299.99768 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 2.2402 2.4393 1.2231 5 6 2.1195 1.7583 2.4515 6 1 1.4881 0.8853 2.5253 7 6 2.8179 2.2135 3.5750 8 7 2.4558 1.8264 4.7719 9 14 4.2671 3.3737 3.3673 10 1 3.8070 4.7755 3.5355 11 1 5.2987 3.0652 4.3900 12 1 4.8477 3.2026 2.0113 13 6 2.4850 3.8248 1.2001 14 6 2.6009 4.4764 0.0069 15 6 2.4790 3.7851 -1.1919 16 6 2.2330 2.4263 -1.1989 17 16 2.0748 1.5677 -2.7295 18 6 3.4865 0.4288 -2.7576 19 8 0.8560 0.8481 -2.6032 20 8 2.2298 2.5786 -3.7161 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.9402 2.1417 5.5509 25 1 2.5811 4.3720 2.1262 26 1 2.7885 5.5400 -0.0056 27 1 2.5731 4.3164 -2.1275 28 1 3.4257 -0.2464 -1.9041 29 1 3.4680 -0.1498 -3.6811 30 1 4.4141 0.9987 -2.7048 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258328756.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:57 Heat of formation + Delta-G solvation = -47.176923 kcal Electronic energy + Delta-G solvation = -17125.679127 eV Core-core repulsion = 14332.594542 eV Total energy + Delta-G solvation = -2793.084585 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 272.033 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.02267 -36.55003 -35.41719 -33.96688 -30.93834 -30.49572 -29.09210 -27.91747 -25.54667 -22.56477 -21.23592 -18.83329 -17.78768 -16.80998 -15.78058 -15.76687 -15.50259 -15.20836 -14.30483 -14.09918 -13.34935 -13.15169 -13.06444 -12.92177 -12.62615 -12.47846 -12.13266 -11.91963 -11.73187 -11.56424 -11.24030 -11.04442 -10.93770 -10.62592 -10.50441 -10.17975 -9.90281 -9.59947 -9.32918 -8.35387 -7.92724 -7.26351 -6.80124 -4.78948 0.63577 1.65256 2.18814 2.79453 2.89282 3.02145 3.09133 3.38860 3.51118 3.72155 4.01973 4.35656 4.70665 5.03303 5.13100 5.42781 5.75896 5.93715 5.99654 6.04945 6.11211 6.14554 6.46113 6.67959 6.73087 6.89972 6.91285 7.23517 7.41559 7.64338 8.08973 8.27333 8.46996 9.75506 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.024822 B = 0.008589 C = 0.007202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.753143 B = 3259.206011 C = 3886.694697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.170 6.170 3 C -0.148 4.148 4 C 0.102 3.898 5 C -0.414 4.414 6 H 0.110 0.890 7 C 0.083 3.917 8 N -0.784 5.784 9 Si 0.906 3.094 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.242 1.242 13 C -0.186 4.186 14 C -0.080 4.080 15 C -0.157 4.157 16 C -0.557 4.557 17 S 2.495 3.505 18 C -0.648 4.648 19 O -0.937 6.937 20 O -0.961 6.961 21 H 0.097 0.903 22 H 0.084 0.916 23 H 0.071 0.929 24 H 0.291 0.709 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.122 0.878 28 H 0.144 0.856 29 H 0.122 0.878 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.443 -0.771 -7.102 7.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.063 5.937 3 C -0.262 4.262 4 C 0.095 3.905 5 C -0.441 4.441 6 H 0.127 0.873 7 C -0.139 4.139 8 N -0.406 5.406 9 Si 0.731 3.269 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.165 1.165 13 C -0.207 4.207 14 C -0.100 4.100 15 C -0.179 4.179 16 C -0.650 4.650 17 S 2.678 3.322 18 C -0.798 4.798 19 O -0.934 6.934 20 O -0.958 6.958 21 H 0.116 0.884 22 H 0.103 0.897 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.140 0.860 28 H 0.163 0.837 29 H 0.141 0.859 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.483 -1.701 -7.405 7.993 hybrid contribution 0.362 1.663 1.042 1.995 sum 2.845 -0.038 -6.363 6.970 Atomic orbital electron populations 1.23649 0.95385 1.05151 1.05995 1.84640 1.07909 1.04355 1.96842 1.20978 1.16944 0.94517 0.93768 1.17883 0.88966 0.91103 0.92527 1.19671 1.22537 1.11497 0.90364 0.87266 1.26274 0.98433 0.94976 0.94208 1.69698 1.35493 1.36011 0.99378 0.86389 0.80430 0.79715 0.80347 1.19243 1.21005 1.16496 1.21128 1.07803 0.94710 0.97037 1.20611 0.98044 0.98441 0.92874 1.20195 1.07761 0.92015 0.97934 1.29990 1.12974 1.05435 1.16569 1.04976 0.77090 0.75597 0.74559 1.30255 1.20222 1.17519 1.11820 1.93513 1.39902 1.73969 1.86066 1.93496 1.87301 1.56561 1.58431 0.88417 0.89708 0.90995 0.89859 0.87296 0.87549 0.85983 0.83737 0.85937 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 10.18 101.05 1.03 -1.51 16 2 S -0.17 -3.45 16.95 -107.50 -1.82 -5.27 16 3 C -0.15 -3.31 5.56 -38.03 -0.21 -3.53 16 4 C 0.10 2.45 5.11 -106.62 -0.55 1.91 16 5 C -0.41 -10.39 8.90 -37.93 -0.34 -10.73 16 6 H 0.11 2.89 7.33 -52.49 -0.38 2.50 16 7 C 0.08 2.02 5.40 -17.33 -0.09 1.92 16 8 N -0.78 -19.29 13.93 55.55 0.77 -18.52 16 9 Si 0.91 19.03 24.52 -169.99 -4.17 14.87 16 10 H -0.27 -5.37 6.71 56.52 0.38 -4.99 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.24 -5.22 6.86 56.52 0.39 -4.83 16 13 C -0.19 -4.18 7.11 -39.29 -0.28 -4.46 16 14 C -0.08 -1.63 9.96 -39.97 -0.40 -2.03 16 15 C -0.16 -3.18 9.50 -39.38 -0.37 -3.55 16 16 C -0.56 -11.46 5.59 -39.40 -0.22 -11.68 16 17 S 2.49 43.13 5.22 -107.50 -0.56 42.56 16 18 C -0.65 -8.55 10.58 101.05 1.07 -7.49 16 19 O -0.94 -17.82 14.05 -57.54 -0.81 -18.62 16 20 O -0.96 -18.20 16.73 -57.54 -0.96 -19.17 16 21 H 0.10 1.89 5.97 -51.92 -0.31 1.58 16 22 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 23 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 24 H 0.29 6.43 8.30 -40.82 -0.34 6.09 16 25 H 0.11 2.37 4.76 -52.49 -0.25 2.12 16 26 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 27 H 0.12 2.25 7.19 -52.49 -0.38 1.87 16 28 H 0.14 2.01 6.10 -51.93 -0.32 1.70 16 29 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.12 1.46 8.14 -51.92 -0.42 1.04 16 LS Contribution 270.23 15.07 4.07 4.07 Total: -1.00 -28.60 270.23 -6.76 -35.36 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -2.92 Total: 5.84 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: -0.36 Total: -41.13 kcal Atomic # 7 Polarization: -19.29 SS G_CDS: 0.77 Total: -18.52 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -1.77 Total: -37.79 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.17 Total: 14.87 kcal Atomic # 16 Polarization: 39.68 SS G_CDS: -2.38 Total: 37.30 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.60 -6.76 -35.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258328756.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.817 kcal (2) G-P(sol) polarization free energy of solvation -28.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds