Wall clock time and date at job start Mon Mar 30 2020 06:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76198 * 100.00002 * 2 1 4 4 C 1.41673 * 120.30723 * 90.00229 * 3 2 1 5 5 C 1.40965 * 120.31409 * 359.97195 * 4 3 2 6 6 H 1.07998 * 120.00453 * 329.84706 * 5 4 3 7 7 C 1.39902 * 119.99593 * 149.84246 * 5 4 3 8 8 N 1.30902 * 120.00039 * 161.99656 * 7 5 4 9 9 Si 1.86797 * 120.00338 * 341.99672 * 7 5 4 10 10 H 1.48500 * 109.47308 * 95.39363 * 9 7 5 11 11 H 1.48500 * 109.47389 * 215.39545 * 9 7 5 12 12 H 1.48501 * 109.47085 * 335.39468 * 9 7 5 13 13 C 1.40717 * 119.36942 * 179.97438 * 4 3 2 14 14 C 1.36440 * 119.95586 * 359.97438 * 13 4 3 15 15 C 1.38928 * 120.63225 * 0.02562 * 14 13 4 16 16 C 1.38094 * 120.63986 * 0.25107 * 15 14 13 17 17 S 1.76204 * 119.99175 * 179.74486 * 16 15 14 18 18 C 1.81401 * 104.44813 * 115.00538 * 17 16 15 19 19 O 1.42102 * 104.27622 * 231.07746 * 17 16 15 20 20 O 1.42102 * 104.27734 * 358.93133 * 17 16 15 21 21 H 1.08997 * 109.47069 * 59.99717 * 1 2 3 22 22 H 1.08994 * 109.46914 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46900 * 299.99648 * 1 2 3 24 24 H 0.96997 * 120.00136 * 179.97438 * 8 7 5 25 25 H 1.07995 * 120.02259 * 179.97438 * 13 4 3 26 26 H 1.08005 * 119.68627 * 179.97438 * 14 13 4 27 27 H 1.08002 * 119.68068 * 179.97438 * 15 14 13 28 28 H 1.08997 * 109.47391 * 60.00003 * 18 17 16 29 29 H 1.08993 * 109.46669 * 180.02562 * 18 17 16 30 30 H 1.09000 * 109.46598 * 299.99768 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 2.2402 2.4393 1.2231 5 6 2.1195 1.7583 2.4515 6 1 1.4881 0.8853 2.5253 7 6 2.8179 2.2135 3.5750 8 7 2.4558 1.8264 4.7719 9 14 4.2671 3.3737 3.3673 10 1 3.8070 4.7755 3.5355 11 1 5.2987 3.0652 4.3900 12 1 4.8477 3.2026 2.0113 13 6 2.4850 3.8248 1.2001 14 6 2.6009 4.4764 0.0069 15 6 2.4790 3.7851 -1.1919 16 6 2.2330 2.4263 -1.1989 17 16 2.0748 1.5677 -2.7295 18 6 3.4865 0.4288 -2.7576 19 8 0.8560 0.8481 -2.6032 20 8 2.2298 2.5786 -3.7161 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.9402 2.1417 5.5509 25 1 2.5811 4.3720 2.1262 26 1 2.7885 5.5400 -0.0056 27 1 2.5731 4.3164 -2.1275 28 1 3.4257 -0.2464 -1.9041 29 1 3.4680 -0.1498 -3.6811 30 1 4.4141 0.9987 -2.7048 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258328756.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:56 Heat of formation + Delta-G solvation = -66.611925 kcal Electronic energy + Delta-G solvation = -17126.521892 eV Core-core repulsion = 14332.594542 eV Total energy + Delta-G solvation = -2793.927350 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 272.033 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69703 -37.97224 -36.84255 -35.71838 -32.65385 -32.11730 -30.23448 -29.45564 -27.29755 -24.19287 -22.92245 -20.39874 -19.30471 -18.47281 -17.36963 -17.21943 -16.90711 -16.82094 -15.93140 -15.71570 -14.89613 -14.77251 -14.51406 -14.27229 -13.99755 -13.85809 -13.73869 -13.46976 -13.32676 -13.00799 -12.82123 -12.63086 -12.58428 -12.17678 -11.93261 -11.81865 -11.53841 -11.28048 -10.96589 -10.00725 -9.64017 -9.03319 -8.40261 -6.62657 -0.68373 0.01598 0.49142 1.17500 1.20994 1.36221 1.42334 1.83649 2.02402 2.04719 2.35407 2.97137 3.24047 3.46665 4.14628 4.17654 4.27505 4.39116 4.45129 4.53740 4.57145 4.79296 5.02984 5.03723 5.12248 5.23882 5.27802 5.54947 5.69545 5.96029 6.22700 6.51194 6.64448 8.03864 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.024822 B = 0.008589 C = 0.007202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.753143 B = 3259.206011 C = 3886.694697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.165 6.165 3 C -0.165 4.165 4 C 0.085 3.915 5 C -0.447 4.447 6 H 0.080 0.920 7 C 0.052 3.948 8 N -0.824 5.824 9 Si 0.954 3.046 10 H -0.252 1.252 11 H -0.273 1.273 12 H -0.251 1.251 13 C -0.205 4.205 14 C -0.080 4.080 15 C -0.155 4.155 16 C -0.573 4.573 17 S 2.502 3.498 18 C -0.627 4.627 19 O -0.959 6.959 20 O -0.977 6.977 21 H 0.094 0.906 22 H 0.112 0.888 23 H 0.056 0.944 24 H 0.299 0.701 25 H 0.112 0.888 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.164 0.836 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 -0.272 -9.124 9.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.067 5.933 3 C -0.278 4.278 4 C 0.079 3.921 5 C -0.475 4.475 6 H 0.098 0.902 7 C -0.166 4.166 8 N -0.448 5.448 9 Si 0.776 3.224 10 H -0.177 1.177 11 H -0.199 1.199 12 H -0.175 1.175 13 C -0.226 4.226 14 C -0.099 4.099 15 C -0.176 4.176 16 C -0.662 4.662 17 S 2.685 3.315 18 C -0.781 4.781 19 O -0.956 6.956 20 O -0.974 6.974 21 H 0.112 0.888 22 H 0.130 0.870 23 H 0.075 0.925 24 H 0.110 0.890 25 H 0.130 0.870 26 H 0.162 0.838 27 H 0.161 0.839 28 H 0.159 0.841 29 H 0.182 0.818 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.780 -1.151 -9.394 10.191 hybrid contribution -0.086 1.459 1.428 2.044 sum 3.694 0.308 -7.966 8.786 Atomic orbital electron populations 1.23655 0.94466 1.06736 1.05015 1.84455 1.08780 1.03273 1.96805 1.21277 1.16780 0.95732 0.94026 1.18127 0.89181 0.92102 0.92725 1.19556 1.24373 1.11731 0.91852 0.90243 1.26867 0.99980 0.96098 0.93694 1.69719 1.37034 1.38011 1.00064 0.85659 0.78005 0.78894 0.79801 1.17658 1.19893 1.17488 1.21286 1.08777 0.94271 0.98227 1.21047 0.96428 1.00364 0.92023 1.20654 1.05903 0.92207 0.98878 1.30610 1.11663 1.06177 1.17770 1.04896 0.78067 0.75651 0.72862 1.30080 1.17892 1.16296 1.13855 1.93483 1.42422 1.73929 1.85752 1.93473 1.87958 1.58047 1.57934 0.88763 0.86964 0.92470 0.89046 0.87018 0.83846 0.83855 0.84121 0.81840 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 10.18 113.37 1.15 -3.79 16 2 S -0.17 -6.65 16.95 -56.49 -0.96 -7.60 16 3 C -0.16 -7.31 5.56 23.27 0.13 -7.18 16 4 C 0.08 4.11 5.11 -21.16 -0.11 4.01 16 5 C -0.45 -23.30 8.90 23.34 0.21 -23.09 16 6 H 0.08 4.46 7.33 -2.91 -0.02 4.44 16 7 C 0.05 2.57 5.40 85.23 0.46 3.03 16 8 N -0.82 -41.94 13.93 21.82 0.30 -41.64 16 9 Si 0.95 39.00 24.52 68.60 1.68 40.68 16 10 H -0.25 -9.56 6.71 99.48 0.67 -8.89 16 11 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 12 H -0.25 -10.52 6.86 99.48 0.68 -9.83 16 13 C -0.21 -9.04 7.11 22.46 0.16 -8.88 16 14 C -0.08 -3.05 9.96 22.02 0.22 -2.83 16 15 C -0.15 -5.90 9.50 22.40 0.21 -5.69 16 16 C -0.57 -22.63 5.59 22.39 0.13 -22.50 16 17 S 2.50 80.33 5.22 -56.49 -0.29 80.03 16 18 C -0.63 -14.01 10.58 113.37 1.20 -12.82 16 19 O -0.96 -34.87 14.05 -127.65 -1.79 -36.66 16 20 O -0.98 -34.32 16.73 -127.65 -2.13 -36.46 16 21 H 0.09 3.63 5.97 -2.40 -0.01 3.61 16 22 H 0.11 3.54 8.14 -2.40 -0.02 3.52 16 23 H 0.06 2.30 8.14 -2.40 -0.02 2.28 16 24 H 0.30 13.56 8.30 -92.71 -0.77 12.79 16 25 H 0.11 4.77 4.76 -2.91 -0.01 4.75 16 26 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 27 H 0.14 4.81 7.19 -2.91 -0.02 4.79 16 28 H 0.14 3.45 6.10 -2.39 -0.01 3.44 16 29 H 0.16 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.15 2.74 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -62.57 270.23 1.67 -60.90 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 1.10 Total: 20.49 kcal Atomic # 6 Polarization: -83.50 SS G_CDS: 3.76 Total: -79.74 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.30 Total: -41.64 kcal Atomic # 8 Polarization: -69.19 SS G_CDS: -3.93 Total: -73.12 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.68 Total: 40.68 kcal Atomic # 16 Polarization: 73.68 SS G_CDS: -1.25 Total: 72.43 kcal Total: -62.57 1.67 -60.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258328756.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.708 kcal (2) G-P(sol) polarization free energy of solvation -62.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds