Wall clock time and date at job start Mon Mar 30 2020 06:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31482 * 1 3 3 Si 1.86794 * 119.99772 * 2 1 4 4 H 1.48502 * 109.47442 * 240.00389 * 3 2 1 5 5 H 1.48503 * 109.47419 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47040 * 120.00350 * 3 2 1 7 7 C 1.38879 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99918 * 186.95169 * 7 2 1 9 9 N 1.37189 * 119.99953 * 6.94247 * 7 2 1 10 10 C 1.47057 * 125.41361 * 354.22967 * 9 7 2 11 11 C 1.54106 * 103.86376 * 179.97438 * 10 9 7 12 12 H 1.08999 * 110.54617 * 118.74032 * 11 10 9 13 13 C 1.50697 * 110.54726 * 241.40805 * 11 10 9 14 14 C 1.33351 * 125.18661 * 260.00032 * 13 11 10 15 15 C 1.38477 * 114.92970 * 180.02562 * 14 13 11 16 16 C 1.33506 * 114.88128 * 359.97438 * 15 14 13 17 17 Cl 1.73595 * 125.20536 * 179.97438 * 16 15 14 18 18 S 1.75876 * 125.19186 * 80.00369 * 13 11 10 19 19 N 1.47057 * 103.86192 * 0.02562 * 11 10 9 20 20 C 1.33951 * 109.18128 * 359.97438 * 19 11 10 21 21 O 1.21578 * 123.04277 * 180.02562 * 20 19 11 22 22 H 0.96989 * 120.00117 * 359.97438 * 1 2 3 23 23 H 1.09007 * 110.54639 * 61.40570 * 10 9 7 24 24 H 1.08998 * 110.54855 * 298.59836 * 10 9 7 25 25 H 1.07992 * 122.53868 * 359.97438 * 14 13 11 26 26 H 1.07991 * 122.55797 * 179.72806 * 15 14 13 27 27 H 0.96994 * 125.40492 * 180.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 3.1024 1.6965 -1.2125 5 1 1.2837 2.7465 0.0006 6 1 3.1025 1.6964 1.2125 7 6 2.0092 -1.2027 -0.0005 8 1 3.0833 -1.2062 0.1127 9 7 1.3309 -2.3864 -0.1447 10 6 -0.1320 -2.5306 -0.1864 11 6 -0.3489 -4.0463 -0.3602 12 1 -0.9041 -4.4528 0.4851 13 6 -1.0703 -4.3327 -1.6519 14 6 -2.3745 -4.5877 -1.7635 15 6 -2.8149 -4.8226 -3.0552 16 6 -1.8665 -4.7574 -3.9926 17 17 -2.1200 -5.0064 -5.6918 18 16 -0.3208 -4.3817 -3.2422 19 7 1.0148 -4.5954 -0.3974 20 6 1.8959 -3.5945 -0.2699 21 8 3.0993 -3.7669 -0.2683 22 1 -0.4850 0.8399 0.0004 23 1 -0.5462 -1.9854 -1.0347 24 1 -0.5773 -2.1844 0.7463 25 1 -3.0369 -4.6102 -0.9110 26 1 -3.8460 -5.0455 -3.2862 27 1 1.2404 -5.5333 -0.4989 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259513790.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:45 Heat of formation + Delta-G solvation = 23.371035 kcal Electronic energy + Delta-G solvation = -16309.966019 eV Core-core repulsion = 13414.356573 eV Total energy + Delta-G solvation = -2895.609446 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 272.013 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.04740 -37.85548 -36.57523 -35.14295 -34.00867 -31.10038 -30.02206 -27.09158 -25.21881 -23.67257 -21.64925 -20.20243 -19.40052 -17.84258 -17.10053 -15.96773 -15.77472 -15.22445 -14.71328 -14.21065 -13.72131 -13.52256 -13.11325 -12.86784 -12.83281 -12.46565 -12.01225 -11.73593 -11.43425 -11.11461 -11.01666 -10.91050 -10.51339 -10.41380 -10.25703 -9.14362 -8.92852 -8.61197 -8.38225 -8.34784 -7.84426 -6.32651 -3.79758 0.91043 1.23352 2.03243 2.31307 2.68180 3.21842 3.26019 3.29179 3.85104 4.20801 4.27588 4.80562 5.20078 5.29774 5.33979 5.42873 5.49643 5.69624 5.97827 6.17522 6.37038 6.52593 6.85930 7.13354 7.52892 7.92032 8.17969 8.58138 9.19516 9.37772 10.11495 10.77682 Molecular weight = 272.01amu Principal moments of inertia in cm(-1) A = 0.023062 B = 0.005850 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.836167 B = 4785.312547 C = 5201.135965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.279 4.279 8 H 0.104 0.896 9 N -0.466 5.466 10 C 0.142 3.858 11 C 0.175 3.825 12 H 0.098 0.902 13 C -0.164 4.164 14 C -0.137 4.137 15 C -0.116 4.116 16 C -0.169 4.169 17 Cl -0.027 7.027 18 S 0.192 5.808 19 N -0.753 5.753 20 C 0.648 3.352 21 O -0.623 6.623 22 H 0.269 0.731 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.148 0.852 26 H 0.144 0.856 27 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.262 -8.231 -5.351 13.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.406 4.406 8 H 0.121 0.879 9 N -0.190 5.190 10 C 0.017 3.983 11 C 0.066 3.934 12 H 0.116 0.884 13 C -0.284 4.284 14 C -0.167 4.167 15 C -0.149 4.149 16 C -0.313 4.313 17 Cl 0.002 6.998 18 S 0.455 5.545 19 N -0.415 5.415 20 C 0.349 3.651 21 O -0.506 6.506 22 H 0.079 0.921 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.166 0.834 26 H 0.162 0.838 27 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -7.263 -7.742 -6.023 12.205 hybrid contribution -1.399 0.205 0.229 1.432 sum -8.662 -7.537 -5.794 12.861 Atomic orbital electron populations 1.69832 1.05573 1.27523 1.51169 1.25170 0.95822 0.99252 0.97345 0.85888 0.78710 0.80439 0.79003 1.19951 1.20947 1.19983 1.19381 0.92688 0.80523 1.48047 0.87866 1.42768 1.04583 1.04368 1.67301 1.22241 0.84057 0.87404 1.04622 1.20655 0.84227 0.97544 0.90994 0.88449 1.25276 0.97892 1.06596 0.98640 1.19855 0.94647 1.04702 0.97489 1.20093 1.00207 1.03191 0.91431 1.25408 1.00512 1.15643 0.89688 1.98340 1.96269 1.95385 1.09845 1.84900 1.05135 1.67307 0.97122 1.45162 1.05171 1.08947 1.82255 1.15857 0.84905 0.81661 0.82679 1.90773 1.12489 1.84553 1.62788 0.92119 0.89387 0.89624 0.83400 0.83834 0.74500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.25 10.40 55.49 0.58 -22.67 15 2 C 0.03 0.65 5.48 -17.46 -0.10 0.56 15 3 Si 0.93 20.64 29.56 -169.99 -5.02 15.62 15 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.28 -6.16 7.11 56.52 0.40 -5.75 15 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.28 -7.71 9.92 -14.92 -0.15 -7.86 15 8 H 0.10 2.95 7.68 -52.49 -0.40 2.55 15 9 N -0.47 -11.93 3.07 -119.60 -0.37 -12.30 15 10 C 0.14 3.05 5.29 -3.16 -0.02 3.03 15 11 C 0.18 2.96 4.19 -68.20 -0.29 2.67 15 12 H 0.10 1.37 8.14 -51.93 -0.42 0.94 15 13 C -0.16 -2.50 5.36 -36.02 -0.19 -2.69 15 14 C -0.14 -1.75 10.05 -41.20 -0.41 -2.16 15 15 C -0.12 -1.44 10.13 -41.15 -0.42 -1.86 15 16 C -0.17 -2.32 7.10 29.08 0.21 -2.11 15 17 Cl -0.03 -0.33 29.29 -51.86 -1.52 -1.85 15 18 S 0.19 3.03 23.02 -107.50 -2.47 0.55 15 19 N -0.75 -14.26 5.74 -59.33 -0.34 -14.60 15 20 C 0.65 16.05 8.55 -88.39 -0.76 15.29 15 21 O -0.62 -17.74 17.53 5.30 0.09 -17.65 15 22 H 0.27 6.65 8.31 -40.82 -0.34 6.31 15 23 H 0.09 2.03 6.96 -51.93 -0.36 1.67 15 24 H 0.09 1.90 7.64 -51.93 -0.40 1.50 15 25 H 0.15 1.52 8.06 -52.49 -0.42 1.09 15 26 H 0.14 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.42 6.78 8.96 -40.82 -0.37 6.41 15 LS Contribution 269.79 15.07 4.07 4.07 Total: -1.00 -30.50 269.79 -9.04 -39.54 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -1.93 Total: 4.43 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.12 Total: 4.87 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.13 Total: -49.57 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.09 Total: -17.65 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.47 Total: 0.55 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.52 Total: -1.85 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.50 -9.04 -39.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259513790.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.907 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds