Wall clock time and date at job start Mon Mar 30 2020 06:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99558 * 2 1 4 4 H 1.48500 * 109.47052 * 269.99212 * 3 2 1 5 5 H 1.48497 * 109.47471 * 30.00060 * 3 2 1 6 6 H 1.48508 * 109.46939 * 150.00258 * 3 2 1 7 7 C 1.37880 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99689 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99701 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.46747 * 180.02562 * 9 7 2 11 11 S 1.75204 * 124.70239 * 269.84269 * 10 9 7 12 12 C 1.75241 * 90.79944 * 179.97438 * 11 10 9 13 13 C 1.34842 * 110.42638 * 0.25564 * 12 11 10 14 14 C 1.35128 * 124.70149 * 89.99919 * 10 9 7 15 15 C 1.52046 * 119.26791 * 359.73416 * 14 10 9 16 16 C 1.52316 * 111.32093 * 160.61213 * 15 14 10 17 17 S 1.81761 * 108.69877 * 53.91162 * 16 15 14 18 18 O 1.42096 * 108.78657 * 46.70097 * 17 16 15 19 19 O 1.42100 * 108.78525 * 178.27652 * 17 16 15 20 20 C 1.52515 * 119.64369 * 179.51217 * 13 12 11 21 21 H 0.96996 * 119.99919 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47329 * 60.00688 * 9 7 2 23 23 H 1.08997 * 109.47198 * 299.99673 * 9 7 2 24 24 H 1.08001 * 124.78374 * 180.22924 * 12 11 10 25 25 H 1.08997 * 109.10543 * 281.08682 * 15 14 10 26 26 H 1.09000 * 109.11065 * 40.19856 * 15 14 10 27 27 H 1.09003 * 109.59950 * 173.67496 * 16 15 14 28 28 H 1.08996 * 109.59700 * 294.14446 * 16 15 14 29 29 H 1.09000 * 109.55501 * 41.57585 * 20 13 12 30 30 H 1.09004 * 109.63247 * 281.33229 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0140 -2.6147 0.0010 11 16 4.3497 -3.5542 1.4413 12 6 4.8316 -4.9264 0.4637 13 6 4.7291 -4.6292 -0.8476 14 6 4.2709 -3.3398 -1.1100 15 6 4.0431 -2.7125 -2.4762 16 6 4.8077 -3.4580 -3.5623 17 16 4.3656 -5.2192 -3.4817 18 8 2.9529 -5.3322 -3.3788 19 8 5.0472 -5.9100 -4.5198 20 6 5.1090 -5.6756 -1.8901 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8912 23 1 3.8753 -0.6803 -0.8888 24 1 5.1643 -5.8760 0.8562 25 1 2.9783 -2.7382 -2.7075 26 1 4.3781 -1.6755 -2.4530 27 1 4.5380 -3.0577 -4.5396 28 1 5.8793 -3.3421 -3.4002 29 1 4.7346 -6.6514 -1.5808 30 1 6.1936 -5.7160 -1.9901 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259881532.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:12 Heat of formation + Delta-G solvation = -43.832201 kcal Electronic energy + Delta-G solvation = -16781.604408 eV Core-core repulsion = 13988.664861 eV Total energy + Delta-G solvation = -2792.939547 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 272.033 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.64159 -36.86044 -35.94368 -33.76391 -32.89301 -31.59463 -28.98163 -26.78198 -24.09188 -22.83421 -20.83990 -18.94611 -17.60585 -17.18870 -16.95049 -16.52354 -15.75214 -15.40452 -14.90808 -14.25995 -14.07665 -13.63045 -13.52444 -12.92752 -12.58280 -12.25179 -12.16885 -12.02949 -11.97306 -11.81577 -11.47993 -11.27259 -10.92845 -10.71821 -10.51961 -10.23939 -10.14284 -10.08536 -9.50618 -8.68601 -7.96851 -7.86275 -6.16936 -4.18347 0.07560 1.39955 2.06463 2.39771 2.69743 2.86578 3.19264 3.28172 3.28615 3.69058 4.06058 4.30398 4.56294 4.72876 4.81268 5.04883 5.08946 5.15778 5.27350 5.41823 5.66746 5.95062 6.04500 6.25520 6.28682 6.47656 6.73642 6.87995 7.07285 7.50811 8.36690 8.88774 9.40798 10.95524 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.022307 B = 0.006776 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.909314 B = 4131.100299 C = 4828.965350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.074 3.926 3 Si 0.872 3.128 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.079 0.921 9 C 0.041 3.959 10 C -0.095 4.095 11 S 0.129 5.871 12 C -0.243 4.243 13 C -0.076 4.076 14 C -0.158 4.158 15 C -0.038 4.038 16 C -0.594 4.594 17 S 2.418 3.582 18 O -0.924 6.924 19 O -0.951 6.951 20 C -0.538 4.538 21 H 0.266 0.734 22 H 0.031 0.969 23 H 0.039 0.961 24 H 0.158 0.842 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.136 0.864 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.895 -7.515 -2.783 15.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.097 0.903 9 C 0.002 3.998 10 C -0.213 4.213 11 S 0.397 5.603 12 C -0.379 4.379 13 C -0.091 4.091 14 C -0.168 4.168 15 C -0.078 4.078 16 C -0.724 4.724 17 S 2.601 3.399 18 O -0.921 6.921 19 O -0.948 6.948 20 C -0.669 4.669 21 H 0.076 0.924 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.176 0.824 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.154 0.846 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.159 -7.671 -1.773 14.485 hybrid contribution 0.927 0.948 -0.818 1.557 sum 13.085 -6.724 -2.591 14.938 Atomic orbital electron populations 1.69884 1.06196 1.27127 1.49725 1.24952 0.94721 0.98825 0.94343 0.86897 0.80452 0.83954 0.78799 1.19947 1.21002 1.18955 1.20869 0.87518 0.95058 1.52235 0.90298 1.18516 0.97797 0.85504 0.97973 1.25151 1.00526 1.02185 0.93470 1.83984 1.62475 1.04112 1.09767 1.25543 1.12360 1.03884 0.96150 1.18312 1.04942 0.92759 0.93097 1.19156 1.08470 0.93056 0.96160 1.19973 1.01489 0.99843 0.86458 1.29962 1.10780 1.23555 1.08094 1.07943 0.76305 0.78829 0.76868 1.93629 1.27027 1.85307 1.86127 1.93574 1.76653 1.71700 1.52923 1.29211 1.12930 1.06443 1.18273 0.92382 0.95041 0.94283 0.82400 0.87929 0.88477 0.84596 0.85115 0.84424 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.96 55.43 0.77 -25.62 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 7 C -0.52 -13.92 9.65 -34.44 -0.33 -14.25 16 8 H 0.08 2.36 7.98 -52.49 -0.42 1.94 16 9 C 0.04 0.91 4.10 -29.03 -0.12 0.79 16 10 C -0.10 -1.86 5.68 -35.41 -0.20 -2.06 16 11 S 0.13 2.15 23.28 -107.50 -2.50 -0.35 16 12 C -0.24 -3.54 10.86 29.53 0.32 -3.22 16 13 C -0.08 -1.15 5.75 -104.51 -0.60 -1.75 16 14 C -0.16 -2.74 5.72 -104.65 -0.60 -3.34 16 15 C -0.04 -0.59 5.02 -27.57 -0.14 -0.73 16 16 C -0.59 -6.80 6.35 36.81 0.23 -6.57 16 17 S 2.42 31.31 5.35 -107.50 -0.57 30.73 16 18 O -0.92 -16.13 17.75 -57.80 -1.03 -17.15 16 19 O -0.95 -13.97 18.11 -57.80 -1.05 -15.02 16 20 C -0.54 -6.02 6.43 36.91 0.24 -5.78 16 21 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 22 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 23 H 0.04 0.82 5.95 -51.93 -0.31 0.51 16 24 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 25 H 0.10 1.80 8.06 -51.93 -0.42 1.38 16 26 H 0.10 1.46 6.67 -51.93 -0.35 1.11 16 27 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.14 1.31 8.14 -51.92 -0.42 0.88 16 30 H 0.14 1.11 8.14 -51.92 -0.42 0.69 16 LS Contribution 276.49 15.07 4.17 4.17 Total: -1.00 -33.98 276.49 -9.32 -43.30 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -3.15 Total: -0.62 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: -1.30 Total: -34.95 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.77 Total: -25.62 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -2.07 Total: -32.17 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Atomic # 16 Polarization: 33.46 SS G_CDS: -3.08 Total: 30.38 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.98 -9.32 -43.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259881532.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.529 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds