Wall clock time and date at job start Mon Mar 30 2020 06:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99558 * 2 1 4 4 H 1.48500 * 109.47052 * 269.99212 * 3 2 1 5 5 H 1.48497 * 109.47471 * 30.00060 * 3 2 1 6 6 H 1.48508 * 109.46939 * 150.00258 * 3 2 1 7 7 C 1.37880 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99689 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99701 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.46747 * 180.02562 * 9 7 2 11 11 S 1.75204 * 124.70239 * 269.84269 * 10 9 7 12 12 C 1.75241 * 90.79944 * 179.97438 * 11 10 9 13 13 C 1.34842 * 110.42638 * 0.25564 * 12 11 10 14 14 C 1.35128 * 124.70149 * 89.99919 * 10 9 7 15 15 C 1.52046 * 119.26791 * 359.73416 * 14 10 9 16 16 C 1.52316 * 111.32093 * 160.61213 * 15 14 10 17 17 S 1.81761 * 108.69877 * 53.91162 * 16 15 14 18 18 O 1.42096 * 108.78657 * 46.70097 * 17 16 15 19 19 O 1.42100 * 108.78525 * 178.27652 * 17 16 15 20 20 C 1.52515 * 119.64369 * 179.51217 * 13 12 11 21 21 H 0.96996 * 119.99919 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47329 * 60.00688 * 9 7 2 23 23 H 1.08997 * 109.47198 * 299.99673 * 9 7 2 24 24 H 1.08001 * 124.78374 * 180.22924 * 12 11 10 25 25 H 1.08997 * 109.10543 * 281.08682 * 15 14 10 26 26 H 1.09000 * 109.11065 * 40.19856 * 15 14 10 27 27 H 1.09003 * 109.59950 * 173.67496 * 16 15 14 28 28 H 1.08996 * 109.59700 * 294.14446 * 16 15 14 29 29 H 1.09000 * 109.55501 * 41.57585 * 20 13 12 30 30 H 1.09004 * 109.63247 * 281.33229 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0140 -2.6147 0.0010 11 16 4.3497 -3.5542 1.4413 12 6 4.8316 -4.9264 0.4637 13 6 4.7291 -4.6292 -0.8476 14 6 4.2709 -3.3398 -1.1100 15 6 4.0431 -2.7125 -2.4762 16 6 4.8077 -3.4580 -3.5623 17 16 4.3656 -5.2192 -3.4817 18 8 2.9529 -5.3322 -3.3788 19 8 5.0472 -5.9100 -4.5198 20 6 5.1090 -5.6756 -1.8901 21 1 -0.4850 0.8400 -0.0004 22 1 3.8746 -0.6800 0.8912 23 1 3.8753 -0.6803 -0.8888 24 1 5.1643 -5.8760 0.8562 25 1 2.9783 -2.7382 -2.7075 26 1 4.3781 -1.6755 -2.4530 27 1 4.5380 -3.0577 -4.5396 28 1 5.8793 -3.3421 -3.4002 29 1 4.7346 -6.6514 -1.5808 30 1 6.1936 -5.7160 -1.9901 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259881532.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:11 Heat of formation + Delta-G solvation = -68.791252 kcal Electronic energy + Delta-G solvation = -16782.686714 eV Core-core repulsion = 13988.664861 eV Total energy + Delta-G solvation = -2794.021853 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 272.033 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88551 -37.99255 -37.08176 -35.51868 -34.15972 -33.20440 -30.35317 -28.08350 -25.57304 -24.26275 -22.25399 -20.05985 -19.01763 -18.77913 -18.42294 -17.62366 -16.86825 -16.65317 -16.26280 -15.87923 -15.29339 -14.82179 -14.73557 -14.49868 -14.08884 -13.52733 -13.46798 -13.28131 -13.19616 -13.06698 -12.92207 -12.53736 -12.39138 -12.23552 -11.94251 -11.85202 -11.62845 -11.52314 -11.16432 -10.77965 -9.24613 -9.21911 -8.29470 -6.35963 -0.92613 0.11111 0.79454 1.13494 1.36292 1.38661 1.49123 1.57911 1.74289 2.34091 2.70075 3.01974 3.05221 3.48855 3.69354 3.88965 4.01140 4.16022 4.21384 4.48586 4.61131 4.63299 4.80616 4.86582 5.01251 5.06186 5.13069 5.48234 5.57004 5.60944 6.23984 6.70424 7.27083 8.87077 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.022307 B = 0.006776 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.909314 B = 4131.100299 C = 4828.965350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.945 3.055 4 H -0.260 1.260 5 H -0.285 1.285 6 H -0.242 1.242 7 C -0.519 4.519 8 H 0.027 0.973 9 C 0.048 3.952 10 C -0.151 4.151 11 S 0.118 5.882 12 C -0.221 4.221 13 C -0.092 4.092 14 C -0.149 4.149 15 C -0.046 4.046 16 C -0.581 4.581 17 S 2.423 3.577 18 O -0.981 6.981 19 O -0.969 6.969 20 C -0.522 4.522 21 H 0.268 0.732 22 H 0.033 0.967 23 H 0.052 0.948 24 H 0.198 0.802 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.157 0.843 28 H 0.170 0.830 29 H 0.161 0.839 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.333 -8.035 -3.079 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.767 3.233 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.558 4.558 8 H 0.046 0.954 9 C 0.010 3.990 10 C -0.269 4.269 11 S 0.386 5.614 12 C -0.357 4.357 13 C -0.106 4.106 14 C -0.161 4.161 15 C -0.086 4.086 16 C -0.712 4.712 17 S 2.610 3.390 18 O -0.978 6.978 19 O -0.966 6.966 20 C -0.654 4.654 21 H 0.077 0.923 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.215 0.785 25 H 0.089 0.911 26 H 0.120 0.880 27 H 0.175 0.825 28 H 0.188 0.812 29 H 0.179 0.821 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 15.600 -8.215 -2.092 17.755 hybrid contribution -0.147 0.968 -0.697 1.201 sum 15.453 -7.247 -2.789 17.294 Atomic orbital electron populations 1.70062 1.08412 1.28283 1.51934 1.25947 0.95529 1.03263 0.93923 0.85744 0.79644 0.78232 0.79656 1.18489 1.21134 1.16558 1.21079 0.90439 0.93050 1.51192 0.95425 1.18264 0.94258 0.88142 0.98375 1.24982 1.04352 1.01921 0.95613 1.83915 1.62773 1.05260 1.09472 1.26027 1.10091 1.04090 0.95468 1.18557 1.05064 0.92584 0.94442 1.19554 1.06433 0.93935 0.96145 1.19978 1.00398 1.00952 0.87321 1.29881 1.12540 1.21195 1.07623 1.07518 0.74964 0.79182 0.77352 1.93569 1.30767 1.86342 1.87163 1.93552 1.76420 1.72417 1.54215 1.29159 1.15549 1.06046 1.14628 0.92342 0.94923 0.93041 0.78469 0.91060 0.87980 0.82539 0.81206 0.82099 0.79898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 2 C 0.01 0.62 5.47 84.65 0.46 1.08 16 3 Si 0.94 41.88 27.47 68.60 1.88 43.77 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 7 C -0.52 -29.11 9.65 25.60 0.25 -28.86 16 8 H 0.03 1.77 7.98 -2.91 -0.02 1.75 16 9 C 0.05 2.15 4.10 29.10 0.12 2.27 16 10 C -0.15 -5.86 5.68 24.97 0.14 -5.72 16 11 S 0.12 3.82 23.28 -56.49 -1.32 2.51 16 12 C -0.22 -5.65 10.86 67.04 0.73 -4.92 16 13 C -0.09 -2.48 5.75 -19.79 -0.11 -2.60 16 14 C -0.15 -5.00 5.72 -19.88 -0.11 -5.11 16 15 C -0.05 -1.42 5.02 30.05 0.15 -1.26 16 16 C -0.58 -11.72 6.35 71.76 0.46 -11.27 16 17 S 2.42 57.60 5.35 -56.49 -0.30 57.30 16 18 O -0.98 -34.45 17.75 -127.40 -2.26 -36.71 16 19 O -0.97 -26.05 18.11 -127.40 -2.31 -28.36 16 20 C -0.52 -9.34 6.43 71.82 0.46 -8.88 16 21 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 22 H 0.03 1.42 7.20 -2.39 -0.02 1.41 16 23 H 0.05 2.13 5.95 -2.39 -0.01 2.11 16 24 H 0.20 3.43 8.06 -2.91 -0.02 3.41 16 25 H 0.07 2.61 8.06 -2.39 -0.02 2.60 16 26 H 0.10 2.96 6.67 -2.39 -0.02 2.95 16 27 H 0.16 2.53 8.14 -2.39 -0.02 2.52 16 28 H 0.17 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.16 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.18 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -78.52 276.49 -0.36 -78.88 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.10 Total: 6.20 kcal Atomic # 6 Polarization: -67.81 SS G_CDS: 2.54 Total: -65.27 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.30 Total: -58.31 kcal Atomic # 8 Polarization: -60.50 SS G_CDS: -4.57 Total: -65.07 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.88 Total: 43.77 kcal Atomic # 16 Polarization: 61.42 SS G_CDS: -1.62 Total: 59.80 kcal Total: -78.52 -0.36 -78.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259881532.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.089 kcal (2) G-P(sol) polarization free energy of solvation -78.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds