Wall clock time and date at job start Mon Mar 30 2020 06:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36442 * 125.64282 * 2 1 4 4 C 1.34825 * 108.22915 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.28586 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47396 * 359.97438 * 5 4 3 7 7 C 1.50707 * 109.47068 * 239.99959 * 5 4 3 8 8 H 1.08001 * 119.99896 * 270.86362 * 7 5 4 9 9 C 1.37874 * 119.99850 * 90.87416 * 7 5 4 10 10 N 1.31512 * 119.99846 * 187.20805 * 9 7 5 11 11 Si 1.86796 * 120.00198 * 7.19599 * 9 7 5 12 12 H 1.48500 * 109.47515 * 274.87582 * 11 9 7 13 13 H 1.48501 * 109.46980 * 154.87477 * 11 9 7 14 14 H 1.48499 * 109.47133 * 34.88088 * 11 9 7 15 15 C 1.53005 * 109.47350 * 120.00237 * 5 4 3 16 16 N 1.46895 * 109.47226 * 185.10760 * 15 5 4 17 17 C 1.40920 * 107.43067 * 0.26313 * 4 3 2 18 18 C 1.34946 * 107.41547 * 359.56789 * 17 4 3 19 19 Br 1.89101 * 125.89524 * 180.15728 * 18 17 4 20 20 H 1.08999 * 109.46965 * 90.00261 * 1 2 3 21 21 H 1.09004 * 109.47002 * 209.99932 * 1 2 3 22 22 H 1.08999 * 109.47167 * 330.00191 * 1 2 3 23 23 H 1.07999 * 125.88483 * 359.97298 * 3 2 1 24 24 H 0.97001 * 120.00298 * 179.97438 * 10 9 7 25 25 H 1.09003 * 109.46858 * 305.10389 * 15 5 4 26 26 H 1.08998 * 109.47083 * 65.10080 * 15 5 4 27 27 H 1.00901 * 111.00200 * 65.45879 * 16 15 5 28 28 H 1.00897 * 110.99721 * 189.41522 * 16 15 5 29 29 H 1.07994 * 126.29160 * 179.72044 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2601 1.1088 0.0000 4 6 3.5466 0.7053 0.0006 5 6 4.7611 1.5975 0.0002 6 1 4.4456 2.6408 -0.0010 7 6 5.5868 1.3215 -1.2299 8 1 6.3528 0.5604 -1.2066 9 6 5.3646 2.0407 -2.3850 10 7 5.9830 1.7070 -3.4966 11 14 4.1848 3.4889 -2.3711 12 1 2.7984 3.0001 -2.5812 13 1 4.5471 4.4328 -3.4588 14 1 4.2712 4.1852 -1.0624 15 6 5.5989 1.3190 1.2499 16 7 6.7159 2.2709 1.3127 17 6 3.5470 -0.7039 -0.0052 18 6 2.2596 -1.1082 0.0006 19 35 1.6608 -2.9019 0.0009 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.9180 2.1332 -0.0004 24 1 5.8264 2.2127 -4.3094 25 1 4.9759 1.4308 2.1373 26 1 5.9898 0.3024 1.2061 27 1 6.3807 3.2136 1.4434 28 1 7.3685 2.0152 2.0385 29 1 4.4177 -1.3428 -0.0106 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260124641.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:06 Heat of formation + Delta-G solvation = 31.281351 kcal Electronic energy + Delta-G solvation = -13783.984842 eV Core-core repulsion = 11367.370951 eV Total energy + Delta-G solvation = -2416.613891 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 272.022 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.05038 -37.08552 -34.18402 -33.72138 -32.66577 -30.82131 -28.53463 -26.86821 -25.71442 -22.55326 -20.80900 -20.26565 -18.83704 -17.80941 -16.63533 -16.21813 -15.91330 -15.13504 -14.95852 -14.83732 -14.39080 -13.81046 -13.58050 -13.37491 -13.02027 -12.99169 -12.75577 -12.36005 -12.04678 -11.67155 -11.59679 -11.37600 -10.89645 -10.57616 -9.31681 -9.17696 -8.83422 -8.09581 -6.05853 0.40938 1.14087 1.38058 1.43511 1.50839 2.11729 2.18219 2.49186 3.29148 3.94166 4.08309 4.20402 4.38639 4.43733 4.62717 4.68047 4.74792 4.84239 5.01245 5.23528 5.39711 5.63341 5.78364 6.02391 6.18601 6.39904 6.51102 6.63351 6.92823 6.96979 7.54024 9.08728 Molecular weight = 272.02amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.007043 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.668919 B = 3974.689344 C = 4215.040222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.440 5.440 3 C -0.019 4.019 4 C -0.141 4.141 5 C 0.072 3.928 6 H 0.042 0.958 7 C -0.451 4.451 8 H 0.023 0.977 9 C 0.003 3.997 10 N -0.963 5.963 11 Si 0.936 3.064 12 H -0.268 1.268 13 H -0.301 1.301 14 H -0.238 1.238 15 C 0.096 3.904 16 N -0.850 5.850 17 C -0.154 4.154 18 C -0.011 4.011 19 Br 0.007 6.993 20 H 0.079 0.921 21 H 0.095 0.905 22 H 0.110 0.890 23 H 0.180 0.820 24 H 0.257 0.743 25 H 0.024 0.976 26 H 0.046 0.954 27 H 0.340 0.660 28 H 0.342 0.658 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.667 -4.621 11.450 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.118 5.118 3 C -0.150 4.150 4 C -0.149 4.149 5 C 0.052 3.948 6 H 0.060 0.940 7 C -0.490 4.490 8 H 0.041 0.959 9 C -0.191 4.191 10 N -0.606 5.606 11 Si 0.762 3.238 12 H -0.193 1.193 13 H -0.228 1.228 14 H -0.162 1.162 15 C -0.035 4.035 16 N -0.380 5.380 17 C -0.183 4.183 18 C -0.200 4.200 19 Br 0.090 6.910 20 H 0.097 0.903 21 H 0.113 0.887 22 H 0.129 0.871 23 H 0.197 0.803 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.127 -5.487 10.550 19.242 hybrid contribution -0.172 0.941 0.203 0.978 sum -15.299 -4.546 10.752 19.244 Atomic orbital electron populations 1.22354 0.74826 1.06137 1.04379 1.43975 1.07289 1.03778 1.56745 1.21942 0.89778 0.91734 1.11564 1.20197 0.94751 0.94216 1.05700 1.17710 0.89468 0.93822 0.93785 0.93992 1.20865 1.15589 1.17766 0.94743 0.95914 1.25842 0.97864 1.00503 0.94913 1.70098 1.47163 1.42423 1.00873 0.85868 0.79653 0.80010 0.78256 1.19287 1.22776 1.16212 1.21495 0.91276 0.95344 0.95356 1.58342 1.18797 1.05587 1.55257 1.20635 0.94122 0.95469 1.08060 1.21888 0.91824 0.86350 1.19964 1.96572 1.89531 1.06594 1.98334 0.90272 0.88684 0.87134 0.80333 0.93441 0.95846 0.93539 0.84770 0.84499 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.26 10.92 127.77 1.40 2.66 15 2 N -0.44 -13.78 3.15 -541.66 -1.71 -15.49 15 3 C -0.02 -0.69 11.33 83.19 0.94 0.25 15 4 C -0.14 -5.95 4.75 -19.99 -0.09 -6.05 15 5 C 0.07 3.30 1.98 -12.28 -0.02 3.27 15 6 H 0.04 1.88 5.12 -2.39 -0.01 1.87 15 7 C -0.45 -25.99 8.44 25.60 0.22 -25.77 15 8 H 0.02 1.49 8.06 -2.91 -0.02 1.47 15 9 C 0.00 0.18 5.47 84.65 0.46 0.64 15 10 N -0.96 -62.67 13.96 21.45 0.30 -62.37 15 11 Si 0.94 44.81 27.33 68.60 1.87 46.68 15 12 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 13 H -0.30 -14.61 7.11 99.48 0.71 -13.91 15 14 H -0.24 -10.18 6.33 99.48 0.63 -9.55 15 15 C 0.10 3.81 6.02 86.31 0.52 4.33 15 16 N -0.85 -31.25 9.30 -186.72 -1.74 -32.99 15 17 C -0.15 -6.40 10.47 22.17 0.23 -6.16 15 18 C -0.01 -0.39 7.30 83.23 0.61 0.21 15 19 Br 0.01 0.18 33.33 -20.37 -0.68 -0.50 15 20 H 0.08 1.49 8.14 -2.39 -0.02 1.47 15 21 H 0.09 1.63 7.63 -2.39 -0.02 1.61 15 22 H 0.11 1.62 8.14 -2.39 -0.02 1.60 15 23 H 0.18 5.40 8.06 -2.91 -0.02 5.38 15 24 H 0.26 15.83 8.31 -92.71 -0.77 15.06 15 25 H 0.02 0.82 8.14 -2.39 -0.02 0.80 15 26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 27 H 0.34 11.20 9.07 -89.69 -0.81 10.38 15 28 H 0.34 10.30 9.08 -89.70 -0.81 9.49 15 29 H 0.12 5.30 8.06 -2.91 -0.02 5.28 15 Total: -1.00 -71.67 270.23 1.78 -69.89 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -0.53 Total: 21.38 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 4.26 Total: -26.61 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -3.14 Total: -110.85 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.87 Total: 46.68 kcal Atomic # 35 Polarization: 0.18 SS G_CDS: -0.68 Total: -0.50 kcal Total: -71.67 1.78 -69.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260124641.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.174 kcal (2) G-P(sol) polarization free energy of solvation -71.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds