Wall clock time and date at job start Mon Mar 30 2020 06:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36447 * 125.64541 * 2 1 4 4 C 1.34827 * 108.22622 * 180.23216 * 3 2 1 5 5 C 1.50704 * 126.28302 * 179.75546 * 4 3 2 6 6 H 1.08992 * 109.46953 * 359.97438 * 5 4 3 7 7 C 1.50693 * 109.47137 * 120.00009 * 5 4 3 8 8 H 1.08005 * 120.00598 * 5.44427 * 7 5 4 9 9 C 1.37877 * 120.00051 * 185.44189 * 7 5 4 10 10 N 1.31515 * 120.00212 * 9.40339 * 9 7 5 11 11 Si 1.86798 * 120.00105 * 189.40266 * 9 7 5 12 12 H 1.48496 * 109.47400 * 84.99431 * 11 9 7 13 13 H 1.48505 * 109.47232 * 204.99396 * 11 9 7 14 14 H 1.48501 * 109.47501 * 324.99143 * 11 9 7 15 15 C 1.53006 * 109.46824 * 239.99652 * 5 4 3 16 16 N 1.46902 * 109.46912 * 63.20407 * 15 5 4 17 17 C 1.40911 * 107.43298 * 359.77323 * 4 3 2 18 18 C 1.34943 * 107.41904 * 0.02562 * 17 4 3 19 19 Br 1.89100 * 125.89657 * 179.97438 * 18 17 4 20 20 H 1.09002 * 109.46892 * 270.19156 * 1 2 3 21 21 H 1.09004 * 109.46663 * 30.18565 * 1 2 3 22 22 H 1.08996 * 109.47077 * 150.18746 * 1 2 3 23 23 H 1.07997 * 125.88224 * 0.02562 * 3 2 1 24 24 H 0.96994 * 120.00304 * 179.97438 * 10 9 7 25 25 H 1.09002 * 109.46664 * 183.19782 * 15 5 4 26 26 H 1.08999 * 109.47211 * 303.20416 * 15 5 4 27 27 H 1.00900 * 111.00146 * 56.04232 * 16 15 5 28 28 H 1.00902 * 110.99863 * 179.97438 * 16 15 5 29 29 H 1.08001 * 126.29215 * 179.97438 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2602 1.1088 0.0000 4 6 3.5466 0.7052 -0.0052 5 6 4.7612 1.5974 -0.0123 6 1 4.4456 2.6406 -0.0131 7 6 5.5922 1.3243 1.2148 8 1 5.3209 0.5201 1.8829 9 6 6.6989 2.1010 1.4848 10 7 6.9258 3.1893 0.7821 11 14 7.8760 1.6076 2.8487 12 1 8.8649 0.6337 2.3209 13 1 8.5862 2.8120 3.3495 14 1 7.1129 0.9852 3.9602 15 6 5.5935 1.3157 -1.2649 16 7 4.8096 1.6547 -2.4601 17 6 3.5470 -0.7039 -0.0032 18 6 2.2595 -1.1082 0.0026 19 35 1.6607 -2.9018 0.0068 20 1 -0.3633 0.0034 1.0277 21 1 -0.3633 0.8884 -0.5167 22 1 -0.3633 -0.8916 -0.5109 23 1 1.9180 2.1331 0.0004 24 1 7.7042 3.7359 0.9723 25 1 6.5004 1.9199 -1.2418 26 1 5.8611 0.2595 -1.2934 27 1 4.4944 2.6126 -2.4261 28 1 5.3380 1.4778 -3.3013 29 1 4.4176 -1.3430 -0.0066 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260124643.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:09 Heat of formation + Delta-G solvation = 46.962836 kcal Electronic energy + Delta-G solvation = -13686.024447 eV Core-core repulsion = 11270.090556 eV Total energy + Delta-G solvation = -2415.933891 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 272.022 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.46515 -35.24386 -32.19237 -32.07619 -31.18834 -28.75392 -26.96280 -25.34829 -23.63497 -21.08990 -19.23963 -18.53706 -16.45885 -16.09813 -14.89217 -14.57860 -14.30339 -13.55613 -13.24619 -12.96207 -12.35415 -12.28821 -11.97341 -11.93720 -11.32615 -11.16727 -10.89185 -10.56820 -10.43063 -10.11180 -9.84246 -9.50860 -9.18041 -8.34289 -7.69881 -7.52441 -7.18222 -6.00520 -4.00655 1.88073 2.71361 3.34068 3.40333 3.44057 3.53679 3.92876 4.49600 5.01692 5.30420 5.34478 5.54997 5.76321 5.80753 6.27690 6.36596 6.75112 6.95428 6.98761 7.12762 7.51438 7.58756 7.70268 7.92983 7.98277 8.09996 8.21351 8.42125 8.56886 9.04631 9.62478 11.07769 Molecular weight = 272.02amu Principal moments of inertia in cm(-1) A = 0.025533 B = 0.006214 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.362051 B = 4504.568482 C = 4949.275012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.448 5.448 3 C -0.016 4.016 4 C -0.080 4.080 5 C 0.111 3.889 6 H 0.035 0.965 7 C -0.502 4.502 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.888 3.112 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.274 1.274 15 C 0.076 3.924 16 N -0.853 5.853 17 C -0.127 4.127 18 C -0.015 4.015 19 Br -0.034 7.034 20 H 0.066 0.934 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.157 0.843 24 H 0.259 0.741 25 H 0.041 0.959 26 H 0.046 0.954 27 H 0.328 0.672 28 H 0.317 0.683 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.728 -7.829 -3.387 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.128 5.128 3 C -0.145 4.145 4 C -0.087 4.087 5 C 0.092 3.908 6 H 0.053 0.947 7 C -0.541 4.541 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.716 3.284 12 H -0.206 1.206 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.054 4.054 16 N -0.379 5.379 17 C -0.156 4.156 18 C -0.202 4.202 19 Br 0.049 6.951 20 H 0.084 0.916 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.175 0.825 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.139 0.861 28 H 0.126 0.874 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.718 -8.914 -3.129 15.843 hybrid contribution 1.522 0.862 0.574 1.841 sum -11.196 -8.052 -2.555 14.025 Atomic orbital electron populations 1.21902 0.78382 1.03756 1.02624 1.43627 1.05183 1.04856 1.59145 1.21658 0.90217 0.90067 1.12529 1.19953 0.94263 0.93155 1.01324 1.17255 0.87839 0.93214 0.92524 0.94684 1.21129 1.09766 1.15606 1.07602 0.92291 1.24966 0.98039 0.94505 0.96356 1.69954 1.28150 1.13611 1.41447 0.86673 0.81378 0.77955 0.82441 1.20592 1.21484 1.19910 1.21897 0.95828 0.98652 0.89057 1.59008 1.45799 1.28427 1.04686 1.20666 0.92954 0.95784 1.06186 1.21603 0.92099 0.84098 1.22411 1.96525 1.90199 1.09892 1.98491 0.91564 0.90063 0.90499 0.82541 0.93091 0.94110 0.93575 0.86129 0.87356 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.92 59.85 0.65 1.57 15 2 N -0.45 -7.69 3.15 -122.56 -0.39 -8.08 15 3 C -0.02 -0.31 11.33 -16.71 -0.19 -0.50 15 4 C -0.08 -1.77 4.45 -104.82 -0.47 -2.24 15 5 C 0.11 2.74 2.16 -92.92 -0.20 2.54 15 6 H 0.04 0.93 8.06 -51.93 -0.42 0.52 15 7 C -0.50 -13.64 8.35 -34.44 -0.29 -13.93 15 8 H 0.06 1.63 7.72 -52.48 -0.41 1.23 15 9 C 0.06 1.71 5.18 -17.82 -0.09 1.61 15 10 N -0.89 -25.09 12.15 55.43 0.67 -24.42 15 11 Si 0.89 21.24 29.55 -169.99 -5.02 16.22 15 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 15 C 0.08 1.76 6.00 -3.82 -0.02 1.74 15 16 N -0.85 -16.72 9.29 -10.36 -0.10 -16.81 15 17 C -0.13 -2.67 10.28 -39.74 -0.41 -3.08 15 18 C -0.02 -0.28 7.30 -16.71 -0.12 -0.40 15 19 Br -0.03 -0.51 33.33 -68.01 -2.27 -2.77 15 20 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.08 0.83 8.14 -51.93 -0.42 0.40 15 22 H 0.08 0.85 7.63 -51.93 -0.40 0.46 15 23 H 0.16 2.70 8.06 -52.49 -0.42 2.27 15 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 25 H 0.04 1.04 6.83 -51.93 -0.35 0.69 15 26 H 0.05 1.09 7.95 -51.93 -0.41 0.67 15 27 H 0.33 6.22 8.99 -39.29 -0.35 5.87 15 28 H 0.32 5.48 9.08 -39.29 -0.36 5.12 15 29 H 0.13 2.83 8.06 -52.49 -0.42 2.40 15 LS Contribution 271.73 15.07 4.09 4.09 Total: -1.00 -29.05 271.73 -7.66 -36.72 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -3.52 Total: 7.75 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -1.14 Total: -12.69 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.19 Total: -49.31 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.27 Total: -2.77 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.05 -7.66 -36.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260124643.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.678 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds