Wall clock time and date at job start Mon Mar 30 2020 06:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36447 * 125.64541 * 2 1 4 4 C 1.34827 * 108.22622 * 180.23216 * 3 2 1 5 5 C 1.50704 * 126.28302 * 179.75546 * 4 3 2 6 6 H 1.08992 * 109.46953 * 359.97438 * 5 4 3 7 7 C 1.50693 * 109.47137 * 120.00009 * 5 4 3 8 8 H 1.08005 * 120.00598 * 5.44427 * 7 5 4 9 9 C 1.37877 * 120.00051 * 185.44189 * 7 5 4 10 10 N 1.31515 * 120.00212 * 9.40339 * 9 7 5 11 11 Si 1.86798 * 120.00105 * 189.40266 * 9 7 5 12 12 H 1.48496 * 109.47400 * 84.99431 * 11 9 7 13 13 H 1.48505 * 109.47232 * 204.99396 * 11 9 7 14 14 H 1.48501 * 109.47501 * 324.99143 * 11 9 7 15 15 C 1.53006 * 109.46824 * 239.99652 * 5 4 3 16 16 N 1.46902 * 109.46912 * 63.20407 * 15 5 4 17 17 C 1.40911 * 107.43298 * 359.77323 * 4 3 2 18 18 C 1.34943 * 107.41904 * 0.02562 * 17 4 3 19 19 Br 1.89100 * 125.89657 * 179.97438 * 18 17 4 20 20 H 1.09002 * 109.46892 * 270.19156 * 1 2 3 21 21 H 1.09004 * 109.46663 * 30.18565 * 1 2 3 22 22 H 1.08996 * 109.47077 * 150.18746 * 1 2 3 23 23 H 1.07997 * 125.88224 * 0.02562 * 3 2 1 24 24 H 0.96994 * 120.00304 * 179.97438 * 10 9 7 25 25 H 1.09002 * 109.46664 * 183.19782 * 15 5 4 26 26 H 1.08999 * 109.47211 * 303.20416 * 15 5 4 27 27 H 1.00900 * 111.00146 * 56.04232 * 16 15 5 28 28 H 1.00902 * 110.99863 * 179.97438 * 16 15 5 29 29 H 1.08001 * 126.29215 * 179.97438 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2602 1.1088 0.0000 4 6 3.5466 0.7052 -0.0052 5 6 4.7612 1.5974 -0.0123 6 1 4.4456 2.6406 -0.0131 7 6 5.5922 1.3243 1.2148 8 1 5.3209 0.5201 1.8829 9 6 6.6989 2.1010 1.4848 10 7 6.9258 3.1893 0.7821 11 14 7.8760 1.6076 2.8487 12 1 8.8649 0.6337 2.3209 13 1 8.5862 2.8120 3.3495 14 1 7.1129 0.9852 3.9602 15 6 5.5935 1.3157 -1.2649 16 7 4.8096 1.6547 -2.4601 17 6 3.5470 -0.7039 -0.0032 18 6 2.2595 -1.1082 0.0026 19 35 1.6607 -2.9018 0.0068 20 1 -0.3633 0.0034 1.0277 21 1 -0.3633 0.8884 -0.5167 22 1 -0.3633 -0.8916 -0.5109 23 1 1.9180 2.1331 0.0004 24 1 7.7042 3.7359 0.9723 25 1 6.5004 1.9199 -1.2418 26 1 5.8611 0.2595 -1.2934 27 1 4.4944 2.6126 -2.4261 28 1 5.3380 1.4778 -3.3013 29 1 4.4176 -1.3430 -0.0066 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260124643.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:09 Heat of formation + Delta-G solvation = 28.373986 kcal Electronic energy + Delta-G solvation = -13686.830520 eV Core-core repulsion = 11270.090556 eV Total energy + Delta-G solvation = -2416.739964 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 272.022 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.92155 -37.05038 -34.10959 -33.54826 -32.56503 -30.45770 -28.45978 -26.79512 -25.53496 -22.83734 -20.70137 -20.16663 -18.32948 -17.70601 -16.53262 -16.14095 -15.99201 -15.17743 -14.74423 -14.65910 -13.96956 -13.68251 -13.48870 -13.25500 -13.01551 -12.90464 -12.79575 -12.41940 -11.86925 -11.66668 -11.53491 -11.26264 -11.13258 -10.42562 -9.28184 -9.14096 -8.72109 -8.07885 -6.15337 0.48085 1.26161 1.42853 1.44551 1.53367 2.27076 2.28340 2.51864 3.20389 4.03794 4.13938 4.35995 4.45347 4.67537 4.68332 4.81768 4.95381 5.12359 5.28742 5.41901 5.58729 5.87053 5.91818 6.08661 6.36063 6.40348 6.55306 6.63918 6.81980 7.00762 7.50678 8.98015 Molecular weight = 272.02amu Principal moments of inertia in cm(-1) A = 0.025533 B = 0.006214 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.362051 B = 4504.568482 C = 4949.275012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.439 5.439 3 C -0.012 4.012 4 C -0.115 4.115 5 C 0.117 3.883 6 H 0.007 0.993 7 C -0.517 4.517 8 H 0.046 0.954 9 C 0.020 3.980 10 N -0.917 5.917 11 Si 0.945 3.055 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.093 3.907 16 N -0.842 5.842 17 C -0.159 4.159 18 C -0.012 4.012 19 Br 0.004 6.996 20 H 0.083 0.917 21 H 0.105 0.895 22 H 0.090 0.910 23 H 0.176 0.824 24 H 0.260 0.740 25 H 0.011 0.989 26 H 0.036 0.964 27 H 0.334 0.666 28 H 0.333 0.667 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.323 -8.634 -3.369 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.117 5.117 3 C -0.142 4.142 4 C -0.122 4.122 5 C 0.097 3.903 6 H 0.025 0.975 7 C -0.556 4.556 8 H 0.064 0.936 9 C -0.179 4.179 10 N -0.557 5.557 11 Si 0.771 3.229 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.197 1.197 15 C -0.038 4.038 16 N -0.370 5.370 17 C -0.188 4.188 18 C -0.201 4.201 19 Br 0.087 6.913 20 H 0.101 0.899 21 H 0.124 0.876 22 H 0.109 0.891 23 H 0.193 0.807 24 H 0.069 0.931 25 H 0.029 0.971 26 H 0.055 0.945 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.344 -9.728 -3.123 17.611 hybrid contribution 1.908 1.046 0.540 2.242 sum -12.436 -8.683 -2.583 15.385 Atomic orbital electron populations 1.22301 0.75035 1.05737 1.04373 1.43905 1.07096 1.03737 1.56996 1.21817 0.89737 0.91397 1.11290 1.19757 0.94505 0.93514 1.04378 1.17028 0.88971 0.92178 0.92113 0.97453 1.21380 1.10559 1.15134 1.08519 0.93572 1.25623 0.99323 0.94463 0.98507 1.70051 1.28546 1.14307 1.42751 0.85774 0.79457 0.77722 0.79968 1.20091 1.20968 1.19727 1.21533 0.94754 0.97305 0.90220 1.58869 1.45135 1.28839 1.04121 1.20590 0.94022 0.95405 1.08793 1.21798 0.91741 0.86162 1.20364 1.96548 1.89577 1.06846 1.98372 0.89873 0.87636 0.89102 0.80731 0.93085 0.97056 0.94539 0.85481 0.85579 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 10.92 127.77 1.40 2.76 15 2 N -0.44 -14.09 3.15 -541.67 -1.71 -15.80 15 3 C -0.01 -0.45 11.33 83.19 0.94 0.50 15 4 C -0.11 -5.12 4.45 -19.99 -0.09 -5.21 15 5 C 0.12 5.91 2.16 -12.28 -0.03 5.88 15 6 H 0.01 0.41 8.06 -2.39 -0.02 0.39 15 7 C -0.52 -28.87 8.35 25.60 0.21 -28.66 15 8 H 0.05 2.63 7.72 -2.91 -0.02 2.61 15 9 C 0.02 1.09 5.18 84.65 0.44 1.53 15 10 N -0.92 -52.58 12.15 21.45 0.26 -52.32 15 11 Si 0.94 44.08 29.55 68.60 2.03 46.11 15 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 14 H -0.27 -12.53 7.11 99.48 0.71 -11.83 15 15 C 0.09 4.42 6.00 86.30 0.52 4.94 15 16 N -0.84 -32.92 9.29 -186.70 -1.73 -34.66 15 17 C -0.16 -6.74 10.28 22.17 0.23 -6.51 15 18 C -0.01 -0.41 7.30 83.23 0.61 0.19 15 19 Br 0.00 0.10 33.33 -20.37 -0.68 -0.58 15 20 H 0.08 1.51 8.14 -2.39 -0.02 1.49 15 21 H 0.11 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.09 1.66 7.63 -2.39 -0.02 1.64 15 23 H 0.18 5.75 8.06 -2.91 -0.02 5.72 15 24 H 0.26 14.25 8.31 -92.71 -0.77 13.48 15 25 H 0.01 0.59 6.83 -2.39 -0.02 0.58 15 26 H 0.04 1.77 7.95 -2.39 -0.02 1.75 15 27 H 0.33 12.60 8.99 -89.69 -0.81 11.79 15 28 H 0.33 11.30 9.08 -89.69 -0.81 10.48 15 29 H 0.12 5.24 8.06 -2.91 -0.02 5.22 15 Total: -1.00 -62.84 271.73 1.94 -60.90 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -0.45 Total: 20.93 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 4.23 Total: -24.58 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -3.18 Total: -102.77 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 35 Polarization: 0.10 SS G_CDS: -0.68 Total: -0.58 kcal Total: -62.84 1.94 -60.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260124643.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.272 kcal (2) G-P(sol) polarization free energy of solvation -62.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds