Wall clock time and date at job start Mon Mar 30 2020 06:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99647 * 2 1 4 4 C 1.46898 * 110.99888 * 123.95022 * 2 1 3 5 5 C 1.50701 * 109.47175 * 170.00045 * 4 2 1 6 6 C 1.39240 * 125.95511 * 104.71240 * 5 4 2 7 7 C 1.39766 * 107.08623 * 179.84730 * 6 5 4 8 8 C 1.39911 * 126.34671 * 180.13520 * 7 6 5 9 9 H 1.07999 * 119.99981 * 0.30974 * 8 7 6 10 10 C 1.40033 * 119.99782 * 180.30871 * 8 7 6 11 11 N 1.30884 * 120.00476 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99526 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46936 * 90.00287 * 12 10 8 14 14 H 1.48503 * 109.47096 * 209.99971 * 12 10 8 15 15 H 1.48501 * 109.47409 * 329.99866 * 12 10 8 16 16 N 1.38095 * 107.30656 * 0.41701 * 7 6 5 17 17 H 0.97005 * 125.74837 * 179.71909 * 16 7 6 18 18 C 1.36153 * 125.95428 * 285.02870 * 5 4 2 19 19 Br 1.89095 * 125.49026 * 0.02562 * 18 5 4 20 20 H 1.08992 * 109.47459 * 56.04762 * 1 2 3 21 21 H 1.09004 * 109.47040 * 176.04912 * 1 2 3 22 22 H 1.09000 * 109.47033 * 296.04865 * 1 2 3 23 23 H 1.09002 * 109.47611 * 59.99815 * 3 2 1 24 24 H 1.09001 * 109.46987 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47141 * 299.99621 * 3 2 1 26 26 H 1.09000 * 109.47384 * 290.00200 * 4 2 1 27 27 H 1.08997 * 109.47542 * 49.99973 * 4 2 1 28 28 H 1.08000 * 126.45543 * 359.96879 * 6 5 4 29 29 H 0.97000 * 120.00097 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4818 -0.9524 0.9729 6 6 4.4738 -0.2710 1.6731 7 6 5.7037 -0.7511 1.2145 8 6 6.9685 -0.3418 1.6507 9 1 7.0569 0.4128 2.4183 10 6 8.1197 -0.9106 1.0921 11 7 8.0126 -1.8255 0.1623 12 14 9.8084 -0.3646 1.6752 13 1 10.2394 -1.2178 2.8117 14 1 10.7824 -0.4943 0.5617 15 1 9.7459 1.0522 2.1156 16 7 5.4392 -1.6997 0.2464 17 1 6.1034 -2.2010 -0.2523 18 6 4.0887 -1.8124 0.1093 19 35 3.2000 -2.9753 -1.0881 20 1 -0.3634 0.5739 -0.8524 21 1 -0.3633 -1.0253 -0.0708 22 1 -0.3633 0.4513 0.9233 23 1 1.6459 1.8948 0.8900 24 1 3.0850 1.3424 -0.0005 25 1 1.6459 1.8948 -0.8900 26 1 1.7975 -0.2247 2.0628 27 1 1.5090 -1.7406 1.1758 28 1 4.3216 0.4847 2.4296 29 1 8.8101 -2.2192 -0.2249 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260254820.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:51 Heat of formation + Delta-G solvation = 30.773767 kcal Electronic energy + Delta-G solvation = -13679.987831 eV Core-core repulsion = 11263.351929 eV Total energy + Delta-G solvation = -2416.635902 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 272.022 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.22883 -36.57277 -33.56252 -30.36423 -30.13358 -28.27873 -27.04897 -26.01997 -23.69143 -21.43389 -19.38026 -18.17583 -17.37760 -15.38087 -14.84152 -14.81219 -14.40647 -13.97938 -12.78268 -12.61894 -12.25571 -11.99508 -11.72376 -11.64997 -11.37294 -11.21151 -11.12129 -10.84029 -10.77871 -10.37754 -9.91406 -9.87092 -9.29075 -9.25302 -7.78330 -7.25575 -6.95413 -6.93275 -4.35277 2.83253 2.90045 3.03302 3.08075 3.59883 3.87210 3.97890 4.77762 5.30599 5.31957 5.59236 5.68739 5.83595 5.92580 6.10008 6.14141 6.27310 6.48848 6.60878 6.99925 7.17302 7.38790 7.47861 7.64085 7.73786 7.91775 8.05041 8.63347 8.68546 9.00807 9.52081 10.12258 Molecular weight = 272.02amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.007308 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.752136 B = 3830.719595 C = 4722.867820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.534 5.534 3 C 0.030 3.970 4 C 0.132 3.868 5 C -0.095 4.095 6 C -0.331 4.331 7 C 0.249 3.751 8 C -0.444 4.444 9 H 0.093 0.907 10 C 0.066 3.934 11 N -0.849 5.849 12 Si 0.930 3.070 13 H -0.270 1.270 14 H -0.278 1.278 15 H -0.262 1.262 16 N -0.540 5.540 17 H 0.423 0.577 18 C -0.064 4.064 19 Br -0.064 7.064 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.016 0.984 23 H 0.015 0.985 24 H 0.081 0.919 25 H 0.054 0.946 26 H 0.029 0.971 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.348 -0.072 -1.538 7.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.258 5.258 3 C -0.119 4.119 4 C 0.004 3.996 5 C -0.106 4.106 6 C -0.354 4.354 7 C 0.131 3.869 8 C -0.479 4.479 9 H 0.111 0.889 10 C -0.147 4.147 11 N -0.482 5.482 12 Si 0.755 3.245 13 H -0.195 1.195 14 H -0.203 1.203 15 H -0.186 1.186 16 N -0.150 5.150 17 H 0.270 0.730 18 C -0.250 4.250 19 Br 0.019 6.981 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.126 0.874 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.324 -0.986 -2.670 7.858 hybrid contribution 0.989 0.586 0.916 1.470 sum -6.336 -0.401 -1.754 6.586 Atomic orbital electron populations 1.22336 0.88804 1.01541 0.99477 1.61979 1.06010 1.13772 1.44009 1.22328 1.02427 0.88338 0.98759 1.20357 0.92381 0.96774 0.90041 1.18421 0.92565 0.99693 0.99899 1.20508 0.90807 1.11935 1.12153 1.18037 0.93496 0.87730 0.87615 1.18825 0.88230 1.20818 1.20062 0.88868 1.25942 1.02176 0.93246 0.93292 1.68819 1.32425 1.23607 1.23363 0.85929 0.79709 0.80022 0.78821 1.19500 1.20337 1.18562 1.42823 1.04043 1.34526 1.33567 0.72956 1.20961 0.85850 1.10080 1.08140 1.96328 1.76700 1.63159 1.61929 0.92117 0.91850 0.96561 0.96668 0.90017 0.92695 0.95292 0.91452 0.87364 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.57 60.07 0.57 0.95 15 2 N -0.53 -9.44 5.01 -252.72 -1.27 -10.71 15 3 C 0.03 0.51 9.42 60.06 0.57 1.07 15 4 C 0.13 2.53 5.12 -4.98 -0.03 2.51 15 5 C -0.09 -2.17 4.57 -105.00 -0.48 -2.65 15 6 C -0.33 -8.12 10.34 -38.64 -0.40 -8.52 15 7 C 0.25 6.57 6.71 -83.85 -0.56 6.00 15 8 C -0.44 -11.46 9.33 -38.28 -0.36 -11.82 15 9 H 0.09 2.29 7.85 -52.49 -0.41 1.88 15 10 C 0.07 1.61 5.50 -17.28 -0.10 1.51 15 11 N -0.85 -21.14 10.69 55.55 0.59 -20.54 15 12 Si 0.93 18.45 29.56 -169.99 -5.03 13.43 15 13 H -0.27 -5.31 7.11 56.52 0.40 -4.90 15 14 H -0.28 -5.44 7.11 56.52 0.40 -5.04 15 15 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 16 N -0.54 -13.87 5.78 -8.77 -0.05 -13.92 15 17 H 0.42 10.97 6.28 -40.82 -0.26 10.71 15 18 C -0.06 -1.51 7.63 -16.35 -0.12 -1.63 15 19 Br -0.06 -1.28 33.76 -68.01 -2.30 -3.58 15 20 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 21 H 0.06 0.85 8.12 -51.93 -0.42 0.42 15 22 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 15 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 15 24 H 0.08 1.62 6.79 -51.93 -0.35 1.27 15 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 15 26 H 0.03 0.54 8.11 -51.93 -0.42 0.12 15 27 H 0.07 1.25 8.06 -51.93 -0.42 0.83 15 28 H 0.11 2.52 8.06 -52.49 -0.42 2.09 15 29 H 0.29 6.55 8.30 -40.82 -0.34 6.21 15 LS Contribution 268.44 15.07 4.05 4.05 Total: -1.00 -26.20 268.44 -8.43 -34.64 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -3.53 Total: 9.21 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.90 Total: -12.58 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: -0.72 Total: -45.17 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 35 Polarization: -1.28 SS G_CDS: -2.30 Total: -3.58 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.20 -8.43 -34.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260254820.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.411 kcal (2) G-P(sol) polarization free energy of solvation -26.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds