Wall clock time and date at job start Mon Mar 30 2020 06:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99647 * 2 1 4 4 C 1.46898 * 110.99888 * 123.95022 * 2 1 3 5 5 C 1.50701 * 109.47175 * 170.00045 * 4 2 1 6 6 C 1.39240 * 125.95511 * 104.71240 * 5 4 2 7 7 C 1.39766 * 107.08623 * 179.84730 * 6 5 4 8 8 C 1.39911 * 126.34671 * 180.13520 * 7 6 5 9 9 H 1.07999 * 119.99981 * 0.30974 * 8 7 6 10 10 C 1.40033 * 119.99782 * 180.30871 * 8 7 6 11 11 N 1.30884 * 120.00476 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99526 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46936 * 90.00287 * 12 10 8 14 14 H 1.48503 * 109.47096 * 209.99971 * 12 10 8 15 15 H 1.48501 * 109.47409 * 329.99866 * 12 10 8 16 16 N 1.38095 * 107.30656 * 0.41701 * 7 6 5 17 17 H 0.97005 * 125.74837 * 179.71909 * 16 7 6 18 18 C 1.36153 * 125.95428 * 285.02870 * 5 4 2 19 19 Br 1.89095 * 125.49026 * 0.02562 * 18 5 4 20 20 H 1.08992 * 109.47459 * 56.04762 * 1 2 3 21 21 H 1.09004 * 109.47040 * 176.04912 * 1 2 3 22 22 H 1.09000 * 109.47033 * 296.04865 * 1 2 3 23 23 H 1.09002 * 109.47611 * 59.99815 * 3 2 1 24 24 H 1.09001 * 109.46987 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47141 * 299.99621 * 3 2 1 26 26 H 1.09000 * 109.47384 * 290.00200 * 4 2 1 27 27 H 1.08997 * 109.47542 * 49.99973 * 4 2 1 28 28 H 1.08000 * 126.45543 * 359.96879 * 6 5 4 29 29 H 0.97000 * 120.00097 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4818 -0.9524 0.9729 6 6 4.4738 -0.2710 1.6731 7 6 5.7037 -0.7511 1.2145 8 6 6.9685 -0.3418 1.6507 9 1 7.0569 0.4128 2.4183 10 6 8.1197 -0.9106 1.0921 11 7 8.0126 -1.8255 0.1623 12 14 9.8084 -0.3646 1.6752 13 1 10.2394 -1.2178 2.8117 14 1 10.7824 -0.4943 0.5617 15 1 9.7459 1.0522 2.1156 16 7 5.4392 -1.6997 0.2464 17 1 6.1034 -2.2010 -0.2523 18 6 4.0887 -1.8124 0.1093 19 35 3.2000 -2.9753 -1.0881 20 1 -0.3634 0.5739 -0.8524 21 1 -0.3633 -1.0253 -0.0708 22 1 -0.3633 0.4513 0.9233 23 1 1.6459 1.8948 0.8900 24 1 3.0850 1.3424 -0.0005 25 1 1.6459 1.8948 -0.8900 26 1 1.7975 -0.2247 2.0628 27 1 1.5090 -1.7406 1.1758 28 1 4.3216 0.4847 2.4296 29 1 8.8101 -2.2192 -0.2249 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260254820.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:51 Heat of formation + Delta-G solvation = 14.843280 kcal Electronic energy + Delta-G solvation = -13680.678629 eV Core-core repulsion = 11263.351929 eV Total energy + Delta-G solvation = -2417.326700 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 272.022 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.06189 -37.98235 -35.40982 -32.11986 -31.87992 -30.13760 -28.32305 -27.62701 -25.47838 -22.84715 -21.25176 -20.06281 -19.14932 -17.25645 -16.41430 -16.22395 -15.83652 -15.37422 -14.50546 -14.43721 -13.99493 -13.48951 -13.34000 -13.03197 -12.96599 -12.73051 -12.56109 -12.43480 -12.32270 -12.06697 -11.63108 -11.58573 -11.04704 -10.96625 -9.23732 -9.02599 -8.80605 -8.78366 -6.27802 1.03298 1.28197 1.41188 1.55324 1.82464 2.19806 2.20998 3.30042 3.41481 3.48210 4.34249 4.38196 4.53158 4.60855 4.76700 4.88536 4.91049 5.08752 5.15811 5.19387 5.31776 5.49564 5.74675 5.97988 6.13114 6.26365 6.38667 6.72178 6.84656 7.09012 7.57617 8.30126 Molecular weight = 272.02amu Principal moments of inertia in cm(-1) A = 0.025570 B = 0.007308 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.752136 B = 3830.719595 C = 4722.867820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.550 5.550 3 C 0.035 3.965 4 C 0.138 3.862 5 C -0.093 4.093 6 C -0.347 4.347 7 C 0.216 3.784 8 C -0.478 4.478 9 H 0.095 0.905 10 C 0.027 3.973 11 N -0.872 5.872 12 Si 1.004 2.996 13 H -0.264 1.264 14 H -0.270 1.270 15 H -0.258 1.258 16 N -0.551 5.551 17 H 0.417 0.583 18 C -0.084 4.084 19 Br -0.030 7.030 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.028 0.972 23 H 0.026 0.974 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.862 0.136 -1.682 8.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.274 5.274 3 C -0.113 4.113 4 C 0.011 3.989 5 C -0.103 4.103 6 C -0.370 4.370 7 C 0.098 3.902 8 C -0.513 4.513 9 H 0.113 0.887 10 C -0.183 4.183 11 N -0.504 5.504 12 Si 0.824 3.176 13 H -0.189 1.189 14 H -0.195 1.195 15 H -0.181 1.181 16 N -0.161 5.161 17 H 0.264 0.736 18 C -0.270 4.270 19 Br 0.052 6.948 20 H 0.096 0.904 21 H 0.089 0.911 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.130 0.870 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.877 -0.780 -2.821 8.403 hybrid contribution 1.054 0.484 0.901 1.469 sum -6.823 -0.296 -1.920 7.094 Atomic orbital electron populations 1.22399 0.86172 1.02548 1.00842 1.61914 1.08398 1.13869 1.43192 1.22241 1.00216 0.88549 1.00303 1.20284 0.90014 0.97629 0.91014 1.18810 0.94386 0.98481 0.98663 1.20703 0.91111 1.12481 1.12726 1.18482 0.94515 0.88657 0.88529 1.19115 0.89116 1.21905 1.21128 0.88734 1.26839 1.05713 0.92816 0.92938 1.68862 1.33806 1.23989 1.23778 0.84840 0.74620 0.79642 0.78450 1.18888 1.19515 1.18121 1.42884 1.04790 1.34691 1.33712 0.73602 1.21483 0.85463 1.10954 1.09104 1.96312 1.75771 1.61960 1.60720 0.90436 0.91139 0.95355 0.95532 0.93543 0.90689 0.94788 0.90728 0.87016 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.57 127.69 1.22 1.93 15 2 N -0.55 -18.40 5.01 -953.47 -4.78 -23.18 15 3 C 0.04 1.15 9.42 127.69 1.20 2.35 15 4 C 0.14 5.14 5.12 85.56 0.44 5.58 15 5 C -0.09 -4.26 4.57 -20.11 -0.09 -4.35 15 6 C -0.35 -17.41 10.34 22.88 0.24 -17.18 15 7 C 0.22 11.69 6.71 38.93 0.26 11.95 15 8 C -0.48 -25.24 9.33 23.11 0.22 -25.02 15 9 H 0.09 4.76 7.85 -2.91 -0.02 4.74 15 10 C 0.03 1.32 5.50 85.27 0.47 1.78 15 11 N -0.87 -43.73 10.69 21.85 0.23 -43.49 15 12 Si 1.00 37.50 29.56 68.60 2.03 39.53 15 13 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 14 H -0.27 -9.69 7.11 99.48 0.71 -8.98 15 15 H -0.26 -9.36 7.11 99.48 0.71 -8.66 15 16 N -0.55 -28.91 5.78 -181.66 -1.05 -29.96 15 17 H 0.42 22.15 6.28 -92.70 -0.58 21.57 15 18 C -0.08 -3.99 7.63 83.53 0.64 -3.36 15 19 Br -0.03 -1.19 33.76 -20.37 -0.69 -1.87 15 20 H 0.08 1.69 8.14 -2.39 -0.02 1.67 15 21 H 0.07 1.67 8.12 -2.38 -0.02 1.65 15 22 H 0.03 0.65 8.14 -2.39 -0.02 0.63 15 23 H 0.03 0.79 8.14 -2.39 -0.02 0.77 15 24 H 0.05 1.84 6.79 -2.39 -0.02 1.82 15 25 H 0.07 2.11 8.14 -2.38 -0.02 2.09 15 26 H 0.03 1.22 8.11 -2.39 -0.02 1.20 15 27 H 0.07 2.64 8.06 -2.39 -0.02 2.62 15 28 H 0.11 5.34 8.06 -2.91 -0.02 5.31 15 29 H 0.29 13.41 8.30 -92.71 -0.77 12.64 15 Total: -1.00 -55.99 268.44 0.91 -55.08 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.57 Total: 30.20 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 4.59 Total: -26.30 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -5.59 Total: -96.63 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Atomic # 35 Polarization: -1.19 SS G_CDS: -0.69 Total: -1.87 kcal Total: -55.99 0.91 -55.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260254820.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.923 kcal (2) G-P(sol) polarization free energy of solvation -55.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds