Wall clock time and date at job start Mon Mar 30 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99975 * 2 1 4 4 H 1.48503 * 109.47263 * 264.80067 * 3 2 1 5 5 H 1.48496 * 109.47174 * 24.80114 * 3 2 1 6 6 H 1.48507 * 109.46830 * 144.80014 * 3 2 1 7 7 C 1.37876 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99845 * 6.27603 * 7 2 1 9 9 C 1.50698 * 120.00112 * 186.27391 * 7 2 1 10 10 O 1.42899 * 110.29499 * 61.04865 * 9 7 2 11 11 C 1.54438 * 110.33481 * 298.90010 * 9 7 2 12 12 C 1.54444 * 101.98833 * 215.28781 * 11 9 7 13 13 C 1.51322 * 104.99640 * 25.71641 * 12 11 9 14 14 N 1.35217 * 141.93821 * 163.05720 * 13 12 11 15 15 H 0.97007 * 126.02060 * 359.97438 * 14 13 12 16 16 N 1.39996 * 107.95666 * 180.02562 * 14 13 12 17 17 C 1.30790 * 108.21004 * 359.97438 * 16 14 13 18 18 Br 1.89099 * 125.88970 * 179.97438 * 17 16 14 19 19 C 1.35133 * 110.30021 * 343.33107 * 13 12 11 20 20 H 0.97004 * 119.99840 * 359.97438 * 1 2 3 21 21 H 0.96699 * 113.99679 * 57.84818 * 10 9 7 22 22 H 1.08994 * 110.93016 * 97.10901 * 11 9 7 23 23 H 1.09000 * 110.95721 * 333.46669 * 11 9 7 24 24 H 1.09007 * 110.33139 * 266.83302 * 12 11 9 25 25 H 1.08995 * 110.42523 * 144.64388 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6066 1.9831 -1.3943 5 1 1.3960 2.6819 0.5873 6 1 3.4875 1.4743 0.8071 7 6 2.0045 -1.1940 -0.0005 8 1 1.4694 -2.1265 -0.1032 9 6 3.5047 -1.1981 0.1421 10 8 3.8855 -0.6162 1.3905 11 6 4.1572 -0.4309 -1.0287 12 6 5.4507 -1.2417 -1.2623 13 6 5.1374 -2.6331 -0.7568 14 7 5.5735 -3.9115 -0.8184 15 1 6.3440 -4.2281 -1.3155 16 7 4.7164 -4.6980 -0.0394 17 6 3.7988 -3.9189 0.4720 18 35 2.3869 -4.4648 1.6053 19 6 4.0385 -2.6099 0.0293 20 1 -0.4850 0.8401 0.0004 21 1 3.5050 -1.0573 2.1623 22 1 4.3872 0.5952 -0.7418 23 1 3.5195 -0.4523 -1.9124 24 1 6.2760 -0.8097 -0.6961 25 1 5.6951 -1.2705 -2.3242 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260393811.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:17 Heat of formation + Delta-G solvation = 48.875794 kcal Electronic energy + Delta-G solvation = -14027.366291 eV Core-core repulsion = 11475.682258 eV Total energy + Delta-G solvation = -2551.684033 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.990 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.20418 -37.00192 -33.49584 -32.25511 -31.88529 -29.54318 -27.94840 -27.35569 -23.35158 -21.14607 -20.57161 -19.09122 -17.27223 -17.03756 -14.89781 -14.70715 -14.31106 -13.81123 -13.48477 -12.98864 -12.59694 -12.27031 -11.87547 -11.54845 -11.20390 -11.06054 -10.62672 -10.39398 -10.28666 -10.05365 -9.70692 -8.90757 -8.78179 -8.65863 -8.36435 -7.89453 -6.07674 -4.15434 1.72429 2.06340 3.01859 3.18570 3.35764 3.48323 3.64938 4.51299 4.85935 5.22158 5.23204 5.44323 5.59848 5.71097 5.82569 5.99511 6.41400 6.53466 6.59866 6.91193 7.19547 7.51857 7.61194 7.82065 8.37346 8.90463 9.07909 9.56447 11.03131 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.022700 B = 0.011294 C = 0.008203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.172726 B = 2478.622168 C = 3412.464694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.087 3.913 3 Si 0.867 3.133 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.229 1.229 7 C -0.541 4.541 8 H 0.084 0.916 9 C 0.288 3.712 10 O -0.572 6.572 11 C -0.112 4.112 12 C -0.039 4.039 13 C 0.050 3.950 14 N -0.456 5.456 15 H 0.434 0.566 16 N -0.274 5.274 17 C 0.104 3.896 18 Br 0.032 6.968 19 C -0.200 4.200 20 H 0.264 0.736 21 H 0.365 0.635 22 H 0.077 0.923 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.382 -5.647 0.084 10.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.117 4.117 3 Si 0.695 3.305 4 H -0.211 1.211 5 H -0.228 1.228 6 H -0.152 1.152 7 C -0.579 4.579 8 H 0.102 0.898 9 C 0.247 3.753 10 O -0.378 6.378 11 C -0.150 4.150 12 C -0.078 4.078 13 C -0.079 4.079 14 N -0.166 5.166 15 H 0.278 0.722 16 N -0.100 5.100 17 C -0.139 4.139 18 Br 0.113 6.887 19 C -0.212 4.212 20 H 0.074 0.926 21 H 0.212 0.788 22 H 0.096 0.904 23 H 0.109 0.891 24 H 0.102 0.898 25 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.463 -6.528 0.041 11.497 hybrid contribution 0.399 1.014 -0.251 1.118 sum 9.862 -5.514 -0.209 11.301 Atomic orbital electron populations 1.69950 1.06567 1.27202 1.48809 1.24940 0.94511 0.99290 0.92987 0.87218 0.81920 0.82797 0.78607 1.21089 1.22825 1.15229 1.21383 0.88959 0.95318 1.52213 0.89826 1.17961 0.93871 0.81254 0.82184 1.86464 1.75606 1.59536 1.16238 1.22734 0.94039 0.98594 0.99676 1.20804 1.00282 0.86477 1.00251 1.21986 0.96715 0.88274 1.00904 1.45544 1.25830 1.04040 1.41233 0.72226 1.77354 1.04136 1.16987 1.11561 1.23342 0.96392 0.93277 1.00926 1.96704 1.40469 1.91184 1.60368 1.21649 0.99109 0.96483 1.03985 0.92639 0.78795 0.90443 0.89146 0.89823 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.96 55.43 0.77 -25.52 15 2 C 0.09 2.40 5.46 -17.82 -0.10 2.30 15 3 Si 0.87 20.84 23.99 -169.99 -4.08 16.77 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.30 -7.44 7.11 56.52 0.40 -7.04 15 6 H -0.23 -5.35 5.30 56.52 0.30 -5.05 15 7 C -0.54 -14.41 8.74 -34.44 -0.30 -14.72 15 8 H 0.08 2.44 7.95 -52.49 -0.42 2.02 15 9 C 0.29 6.51 0.75 -91.85 -0.07 6.44 15 10 O -0.57 -12.81 10.52 -35.23 -0.37 -13.18 15 11 C -0.11 -2.25 4.43 -25.22 -0.11 -2.36 15 12 C -0.04 -0.61 6.79 -26.82 -0.18 -0.80 15 13 C 0.05 0.89 8.07 -81.90 -0.66 0.23 15 14 N -0.46 -7.29 7.36 33.64 0.25 -7.05 15 15 H 0.43 4.99 8.96 -182.67 -1.64 3.35 15 16 N -0.27 -5.17 12.69 31.96 0.41 -4.77 15 17 C 0.10 2.13 7.72 -17.24 -0.13 2.00 15 18 Br 0.03 0.59 34.06 -68.01 -2.32 -1.72 15 19 C -0.20 -4.22 5.82 -104.65 -0.61 -4.83 15 20 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 21 H 0.37 7.56 9.07 45.56 0.41 7.98 15 22 H 0.08 1.54 5.35 -51.93 -0.28 1.26 15 23 H 0.09 1.85 7.85 -51.93 -0.41 1.44 15 24 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 LS Contribution 233.66 15.07 3.52 3.52 Total: -1.00 -31.19 233.66 -6.39 -37.58 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -2.41 Total: 6.10 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -2.16 Total: -11.72 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 1.43 Total: -37.34 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.37 Total: -13.18 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.08 Total: 16.77 kcal Atomic # 35 Polarization: 0.59 SS G_CDS: -2.32 Total: -1.72 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -31.19 -6.39 -37.58 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260393811.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.452 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds