Wall clock time and date at job start Mon Mar 30 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32395 * 121.92984 * 2 1 4 4 S 1.75504 * 109.43191 * 179.87825 * 3 2 1 5 5 C 1.76548 * 91.14484 * 359.89191 * 4 3 2 6 6 C 1.33967 * 110.08610 * 0.29833 * 5 4 3 7 7 C 1.52012 * 126.88124 * 179.50387 * 6 5 4 8 8 H 1.08993 * 109.06172 * 259.58257 * 7 6 5 9 9 C 1.50702 * 109.05469 * 140.59102 * 7 6 5 10 10 H 1.08002 * 120.00396 * 325.59673 * 9 7 6 11 11 C 1.37878 * 119.99692 * 145.60138 * 9 7 6 12 12 N 1.31517 * 119.99990 * 359.97438 * 11 9 7 13 13 Si 1.86796 * 120.00128 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46879 * 89.99765 * 13 11 9 15 15 H 1.48500 * 109.47518 * 210.00251 * 13 11 9 16 16 H 1.48499 * 109.47147 * 330.00230 * 13 11 9 17 17 C 1.52327 * 111.57040 * 20.12650 * 7 6 5 18 18 S 1.81863 * 108.56039 * 306.39415 * 17 7 6 19 19 O 1.42101 * 108.83109 * 180.02562 * 18 17 7 20 20 O 1.42100 * 108.83306 * 311.74923 * 18 17 7 21 21 C 1.51839 * 122.49739 * 180.59242 * 5 4 3 22 22 H 1.09001 * 109.46903 * 264.23711 * 1 2 3 23 23 H 1.09004 * 109.47310 * 24.24250 * 1 2 3 24 24 H 1.09003 * 109.46807 * 144.24234 * 1 2 3 25 25 H 1.08003 * 125.28349 * 359.92192 * 3 2 1 26 26 H 0.96997 * 119.99835 * 179.97438 * 12 11 9 27 27 H 1.09000 * 109.62787 * 66.11709 * 17 7 6 28 28 H 1.08997 * 109.61919 * 186.48672 * 17 7 6 29 29 H 1.08997 * 109.54685 * 317.80592 * 21 5 4 30 30 H 1.09002 * 109.54582 * 78.08607 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.1236 0.0000 4 16 3.9207 0.7438 0.0035 5 6 3.5731 -0.9871 0.0082 6 6 2.2490 -1.1905 0.0004 7 6 1.5320 -2.5309 -0.0095 8 1 1.2051 -2.7522 -1.0254 9 6 0.3248 -2.4496 0.8890 10 1 0.3575 -1.8464 1.7842 11 6 -0.8214 -3.1455 0.5681 12 7 -0.8614 -3.8797 -0.5223 13 14 -2.3176 -3.0455 1.6820 14 1 -3.1804 -1.9160 1.2516 15 1 -3.0841 -4.3145 1.5967 16 1 -1.8777 -2.8262 3.0833 17 6 2.4381 -3.6543 0.4775 18 16 3.9696 -3.6289 -0.5028 19 8 4.8192 -4.6756 -0.0534 20 8 3.6311 -3.5460 -1.8804 21 6 4.6680 -2.0389 0.0261 22 1 -0.3633 -0.1032 1.0225 23 1 -0.3634 0.9371 -0.4220 24 1 -0.3633 -0.8340 -0.6005 25 1 1.7889 2.1194 -0.0012 26 1 -1.6676 -4.3696 -0.7479 27 1 2.6750 -3.5031 1.5307 28 1 1.9342 -4.6123 0.3497 29 1 5.4661 -1.7462 -0.6561 30 1 5.0663 -2.1336 1.0363 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260987731.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:42 Heat of formation + Delta-G solvation = -42.128207 kcal Electronic energy + Delta-G solvation = -17346.836850 eV Core-core repulsion = 14553.971194 eV Total energy + Delta-G solvation = -2792.865657 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 272.033 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.59814 -36.38681 -35.43195 -33.93289 -32.79664 -30.75588 -27.93297 -26.68376 -25.05419 -22.45399 -20.34501 -18.63395 -17.71231 -17.01571 -16.40271 -15.84195 -15.29264 -15.09136 -14.71307 -14.03113 -13.93938 -13.09054 -12.79743 -12.72369 -12.56655 -12.00434 -11.58231 -11.51545 -11.43842 -11.37126 -11.10186 -11.08577 -10.85746 -10.75521 -10.53637 -10.30262 -10.22675 -9.47963 -9.18391 -8.70305 -8.05261 -7.60348 -6.31578 -4.32134 0.58227 1.50391 2.13214 2.45562 3.13538 3.21353 3.23796 3.28305 3.30726 4.16083 4.20640 4.46081 4.91317 4.98453 5.23364 5.39368 5.49362 5.73599 5.96625 6.06171 6.10298 6.27434 6.45325 6.63194 6.73271 6.94140 7.14593 7.31380 7.43951 7.60799 7.96049 8.68401 9.25013 10.75778 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.010054 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.049076 B = 2784.323008 C = 4063.099668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.055 4.055 3 C -0.227 4.227 4 S 0.036 5.964 5 C -0.191 4.191 6 C -0.057 4.057 7 C 0.096 3.904 8 H 0.099 0.901 9 C -0.495 4.495 10 H 0.067 0.933 11 C 0.066 3.934 12 N -0.879 5.879 13 Si 0.892 3.108 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.271 1.271 17 C -0.542 4.542 18 S 2.384 3.616 19 O -0.965 6.965 20 O -0.936 6.936 21 C -0.529 4.529 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.095 0.905 25 H 0.158 0.842 26 H 0.269 0.731 27 H 0.118 0.882 28 H 0.136 0.864 29 H 0.129 0.871 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 6.214 2.176 8.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.068 4.068 3 C -0.361 4.361 4 S 0.300 5.700 5 C -0.307 4.307 6 C -0.069 4.069 7 C 0.074 3.926 8 H 0.116 0.884 9 C -0.535 4.535 10 H 0.085 0.915 11 C -0.138 4.138 12 N -0.516 5.516 13 Si 0.719 3.281 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.196 1.196 17 C -0.676 4.676 18 S 2.570 3.430 19 O -0.962 6.962 20 O -0.933 6.933 21 C -0.657 4.657 22 H 0.092 0.908 23 H 0.054 0.946 24 H 0.114 0.886 25 H 0.176 0.824 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.864 6.377 1.420 9.476 hybrid contribution -2.096 -0.099 1.228 2.431 sum 4.768 6.277 2.647 8.315 Atomic orbital electron populations 1.20763 0.89006 1.01143 1.03380 1.19063 0.98443 0.90454 0.98790 1.24925 0.95060 1.02033 1.14112 1.83812 1.07722 1.00683 1.77765 1.23197 0.94883 0.95740 1.16869 1.20486 0.90205 0.99261 0.96988 1.17637 0.91634 0.81856 1.01428 0.88354 1.20838 0.95218 1.29015 1.08417 0.91494 1.24997 0.98801 0.94949 0.95081 1.69892 1.29094 1.28914 1.23651 0.86565 0.82526 0.77913 0.81067 1.20090 1.21000 1.19604 1.30241 1.14116 1.10677 1.12525 1.09301 0.79618 0.76178 0.77893 1.93516 1.67344 1.51730 1.83563 1.93553 1.83592 1.85915 1.30216 1.28953 1.06154 1.18420 1.12146 0.90844 0.94628 0.88609 0.82403 0.92070 0.86356 0.84613 0.85300 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 8.22 36.01 0.30 -1.25 16 2 C -0.06 -1.04 5.66 -105.78 -0.60 -1.64 16 3 C -0.23 -3.72 10.87 28.81 0.31 -3.41 16 4 S 0.04 0.56 23.27 -107.50 -2.50 -1.94 16 5 C -0.19 -3.41 6.31 -35.25 -0.22 -3.63 16 6 C -0.06 -1.13 5.42 -104.71 -0.57 -1.70 16 7 C 0.10 2.11 1.76 -92.62 -0.16 1.94 16 8 H 0.10 2.44 7.27 -51.93 -0.38 2.06 16 9 C -0.49 -11.36 4.68 -34.44 -0.16 -11.52 16 10 H 0.07 1.53 7.03 -52.49 -0.37 1.16 16 11 C 0.07 1.58 5.04 -17.82 -0.09 1.49 16 12 N -0.88 -22.41 12.80 55.43 0.71 -21.70 16 13 Si 0.89 18.80 29.54 -169.99 -5.02 13.78 16 14 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 17 C -0.54 -10.44 5.61 36.81 0.21 -10.24 16 18 S 2.38 43.11 5.38 -107.50 -0.58 42.53 16 19 O -0.96 -19.01 18.11 -57.79 -1.05 -20.06 16 20 O -0.94 -20.23 17.80 -57.79 -1.03 -21.26 16 21 C -0.53 -8.12 6.65 36.57 0.24 -7.88 16 22 H 0.07 1.35 6.98 -51.93 -0.36 0.99 16 23 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 24 H 0.10 2.00 6.28 -51.93 -0.33 1.68 16 25 H 0.16 2.14 8.06 -52.48 -0.42 1.72 16 26 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 27 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 28 H 0.14 2.72 8.14 -51.93 -0.42 2.30 16 29 H 0.13 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 273.00 15.07 4.11 4.11 Total: -1.00 -29.01 273.00 -9.20 -38.21 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -3.10 Total: 4.13 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: -0.74 Total: -37.82 kcal Atomic # 7 Polarization: -22.41 SS G_CDS: 0.71 Total: -21.70 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -2.08 Total: -41.32 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Atomic # 16 Polarization: 43.67 SS G_CDS: -3.08 Total: 40.59 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.01 -9.20 -38.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987731.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.915 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds