Wall clock time and date at job start Mon Mar 30 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32395 * 121.92984 * 2 1 4 4 S 1.75504 * 109.43191 * 179.87825 * 3 2 1 5 5 C 1.76548 * 91.14484 * 359.89191 * 4 3 2 6 6 C 1.33967 * 110.08610 * 0.29833 * 5 4 3 7 7 C 1.52012 * 126.88124 * 179.50387 * 6 5 4 8 8 H 1.08993 * 109.06172 * 259.58257 * 7 6 5 9 9 C 1.50702 * 109.05469 * 140.59102 * 7 6 5 10 10 H 1.08002 * 120.00396 * 325.59673 * 9 7 6 11 11 C 1.37878 * 119.99692 * 145.60138 * 9 7 6 12 12 N 1.31517 * 119.99990 * 359.97438 * 11 9 7 13 13 Si 1.86796 * 120.00128 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46879 * 89.99765 * 13 11 9 15 15 H 1.48500 * 109.47518 * 210.00251 * 13 11 9 16 16 H 1.48499 * 109.47147 * 330.00230 * 13 11 9 17 17 C 1.52327 * 111.57040 * 20.12650 * 7 6 5 18 18 S 1.81863 * 108.56039 * 306.39415 * 17 7 6 19 19 O 1.42101 * 108.83109 * 180.02562 * 18 17 7 20 20 O 1.42100 * 108.83306 * 311.74923 * 18 17 7 21 21 C 1.51839 * 122.49739 * 180.59242 * 5 4 3 22 22 H 1.09001 * 109.46903 * 264.23711 * 1 2 3 23 23 H 1.09004 * 109.47310 * 24.24250 * 1 2 3 24 24 H 1.09003 * 109.46807 * 144.24234 * 1 2 3 25 25 H 1.08003 * 125.28349 * 359.92192 * 3 2 1 26 26 H 0.96997 * 119.99835 * 179.97438 * 12 11 9 27 27 H 1.09000 * 109.62787 * 66.11709 * 17 7 6 28 28 H 1.08997 * 109.61919 * 186.48672 * 17 7 6 29 29 H 1.08997 * 109.54685 * 317.80592 * 21 5 4 30 30 H 1.09002 * 109.54582 * 78.08607 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.1236 0.0000 4 16 3.9207 0.7438 0.0035 5 6 3.5731 -0.9871 0.0082 6 6 2.2490 -1.1905 0.0004 7 6 1.5320 -2.5309 -0.0095 8 1 1.2051 -2.7522 -1.0254 9 6 0.3248 -2.4496 0.8890 10 1 0.3575 -1.8464 1.7842 11 6 -0.8214 -3.1455 0.5681 12 7 -0.8614 -3.8797 -0.5223 13 14 -2.3176 -3.0455 1.6820 14 1 -3.1804 -1.9160 1.2516 15 1 -3.0841 -4.3145 1.5967 16 1 -1.8777 -2.8262 3.0833 17 6 2.4381 -3.6543 0.4775 18 16 3.9696 -3.6289 -0.5028 19 8 4.8192 -4.6756 -0.0534 20 8 3.6311 -3.5460 -1.8804 21 6 4.6680 -2.0389 0.0261 22 1 -0.3633 -0.1032 1.0225 23 1 -0.3634 0.9371 -0.4220 24 1 -0.3633 -0.8340 -0.6005 25 1 1.7889 2.1194 -0.0012 26 1 -1.6676 -4.3696 -0.7479 27 1 2.6750 -3.5031 1.5307 28 1 1.9342 -4.6123 0.3497 29 1 5.4661 -1.7462 -0.6561 30 1 5.0663 -2.1336 1.0363 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260987731.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:41 Heat of formation + Delta-G solvation = -61.430218 kcal Electronic energy + Delta-G solvation = -17347.673848 eV Core-core repulsion = 14553.971194 eV Total energy + Delta-G solvation = -2793.702655 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 272.033 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.03527 -37.96481 -37.02767 -35.57854 -34.25431 -32.37754 -29.35985 -28.15257 -26.69347 -24.00651 -21.81211 -20.10050 -19.21926 -18.63184 -17.89111 -17.32092 -16.80574 -16.67705 -16.31568 -15.52571 -15.32513 -14.59296 -14.30246 -14.18348 -13.96454 -13.48988 -13.19890 -13.12898 -13.03259 -12.89744 -12.71890 -12.59798 -12.48625 -12.27023 -12.09375 -11.82403 -11.66886 -11.13456 -10.79435 -10.49991 -9.41840 -8.92731 -8.12657 -6.17461 -0.89100 0.14116 0.80605 1.11368 1.44329 1.48329 1.55207 1.80379 1.87385 2.44881 2.71010 3.02009 3.21518 3.55814 3.97511 4.05563 4.22755 4.26745 4.50210 4.60112 4.72282 4.89944 5.02835 5.14112 5.25532 5.39970 5.59219 5.68391 5.77805 5.96636 6.22280 6.87662 7.42563 8.95110 Molecular weight = 272.03amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.010054 C = 0.006890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.049076 B = 2784.323008 C = 4063.099668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.089 4.089 3 C -0.217 4.217 4 S 0.104 5.896 5 C -0.204 4.204 6 C -0.087 4.087 7 C 0.095 3.905 8 H 0.055 0.945 9 C -0.486 4.486 10 H 0.067 0.933 11 C 0.023 3.977 12 N -0.921 5.921 13 Si 0.942 3.058 14 H -0.270 1.270 15 H -0.292 1.292 16 H -0.265 1.265 17 C -0.554 4.554 18 S 2.411 3.589 19 O -0.978 6.978 20 O -0.977 6.977 21 C -0.511 4.511 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.189 0.811 26 H 0.265 0.735 27 H 0.141 0.859 28 H 0.116 0.884 29 H 0.161 0.839 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.277 8.633 3.444 11.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 C -0.352 4.352 4 S 0.369 5.631 5 C -0.320 4.320 6 C -0.100 4.100 7 C 0.073 3.927 8 H 0.072 0.928 9 C -0.526 4.526 10 H 0.085 0.915 11 C -0.177 4.177 12 N -0.560 5.560 13 Si 0.768 3.232 14 H -0.196 1.196 15 H -0.218 1.218 16 H -0.189 1.189 17 C -0.687 4.687 18 S 2.599 3.401 19 O -0.975 6.975 20 O -0.974 6.974 21 C -0.643 4.643 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.206 0.794 26 H 0.074 0.926 27 H 0.159 0.841 28 H 0.135 0.865 29 H 0.179 0.821 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.927 8.774 2.699 12.805 hybrid contribution -2.569 -0.704 0.826 2.789 sum 6.358 8.071 3.525 10.862 Atomic orbital electron populations 1.20593 0.89592 1.00995 1.02469 1.19109 0.98495 0.91098 1.01419 1.25326 0.95865 1.02614 1.11378 1.83585 1.06118 0.97398 1.75962 1.23522 0.94641 0.98349 1.15524 1.20321 0.91484 0.98472 0.99763 1.17394 0.92374 0.84064 0.98851 0.92752 1.20998 0.95858 1.27779 1.07989 0.91473 1.25580 1.01076 0.95048 0.95968 1.70024 1.29445 1.30893 1.25667 0.85775 0.80062 0.77440 0.79882 1.19573 1.21847 1.18917 1.30089 1.15514 1.08871 1.14233 1.08095 0.78409 0.77198 0.76360 1.93499 1.66842 1.53677 1.83512 1.93506 1.84181 1.87115 1.32607 1.28829 1.05890 1.14328 1.15232 0.91458 0.92011 0.92238 0.79370 0.92624 0.84101 0.86545 0.82086 0.80758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.85 8.22 71.24 0.59 -2.26 16 2 C -0.09 -3.24 5.66 -20.47 -0.12 -3.36 16 3 C -0.22 -6.34 10.87 66.72 0.73 -5.62 16 4 S 0.10 2.81 23.27 -56.49 -1.31 1.50 16 5 C -0.20 -6.65 6.31 25.08 0.16 -6.49 16 6 C -0.09 -3.41 5.42 -19.92 -0.11 -3.52 16 7 C 0.10 4.29 1.76 -12.09 -0.02 4.27 16 8 H 0.05 2.90 7.27 -2.39 -0.02 2.88 16 9 C -0.49 -23.03 4.68 25.60 0.12 -22.91 16 10 H 0.07 3.10 7.03 -2.91 -0.02 3.08 16 11 C 0.02 1.15 5.04 84.65 0.43 1.58 16 12 N -0.92 -49.89 12.80 21.45 0.27 -49.61 16 13 Si 0.94 39.65 29.54 68.60 2.03 41.68 16 14 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 15 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 16 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 17 C -0.55 -21.80 5.61 71.76 0.40 -21.40 16 18 S 2.41 85.21 5.38 -56.49 -0.30 84.90 16 19 O -0.98 -37.25 18.11 -127.41 -2.31 -39.56 16 20 O -0.98 -42.82 17.80 -127.41 -2.27 -45.08 16 21 C -0.51 -13.67 6.65 71.60 0.48 -13.19 16 22 H 0.07 2.47 6.98 -2.39 -0.02 2.46 16 23 H 0.06 1.86 8.08 -2.39 -0.02 1.84 16 24 H 0.06 2.60 6.28 -2.39 -0.01 2.59 16 25 H 0.19 4.23 8.06 -2.91 -0.02 4.20 16 26 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 27 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 28 H 0.12 4.96 8.14 -2.39 -0.02 4.94 16 29 H 0.16 3.43 8.14 -2.39 -0.02 3.41 16 30 H 0.17 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -64.65 273.00 -0.08 -64.74 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 1.16 Total: 14.35 kcal Atomic # 6 Polarization: -75.56 SS G_CDS: 2.65 Total: -72.91 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.27 Total: -49.61 kcal Atomic # 8 Polarization: -80.07 SS G_CDS: -4.58 Total: -84.65 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Atomic # 16 Polarization: 88.02 SS G_CDS: -1.62 Total: 86.40 kcal Total: -64.65 -0.08 -64.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260987731.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.308 kcal (2) G-P(sol) polarization free energy of solvation -64.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds