Wall clock time and date at job start Mon Mar 30 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38602 * 119.99694 * 2 1 4 4 N 1.32892 * 120.42529 * 0.02562 * 3 2 1 5 5 C 1.32698 * 121.12260 * 179.97438 * 4 3 2 6 6 N 1.38405 * 118.99814 * 179.97438 * 5 4 3 7 7 N 1.32052 * 122.00683 * 0.25839 * 5 4 3 8 8 C 1.34213 * 120.71752 * 359.47982 * 7 5 4 9 9 C 1.41470 * 120.59519 * 180.23377 * 8 7 5 10 10 H 1.08003 * 119.99485 * 180.27411 * 9 8 7 11 11 C 1.40072 * 119.99978 * 0.27390 * 9 8 7 12 12 N 1.30694 * 119.99951 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99841 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47252 * 59.99524 * 13 11 9 15 15 H 1.48496 * 109.46899 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47144 * 299.99954 * 13 11 9 17 17 C 1.39655 * 120.42471 * 179.97438 * 3 2 1 18 18 Br 1.89100 * 120.90468 * 0.05316 * 17 3 2 19 19 H 1.09000 * 109.47051 * 299.99310 * 1 2 3 20 20 H 1.08995 * 109.47586 * 59.99485 * 1 2 3 21 21 H 1.09002 * 109.46789 * 179.97438 * 1 2 3 22 22 H 0.96992 * 119.99879 * 180.02562 * 2 1 3 23 23 H 0.97000 * 119.99304 * 0.02562 * 6 5 4 24 24 H 0.96995 * 120.00050 * 179.72709 * 6 5 4 25 25 H 0.96999 * 120.00115 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1580 1.2004 0.0000 4 7 1.5020 2.3561 0.0005 5 6 2.1514 3.5133 0.0010 6 7 1.4241 4.6909 0.0010 7 7 3.4705 3.5757 -0.0040 8 6 4.2098 2.4556 0.0006 9 6 5.6228 2.5255 0.0002 10 1 6.2082 1.6179 -0.0006 11 6 6.2623 3.7716 0.0007 12 7 5.5538 4.8698 0.0011 13 14 8.1281 3.8638 -0.0006 14 1 8.6562 3.1900 -1.2139 15 1 8.5533 5.2866 -0.0004 16 1 8.6579 3.1881 1.2110 17 6 3.5545 1.2108 0.0005 18 35 4.5378 -0.4044 -0.0002 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.9500 -0.8400 -0.0004 23 1 0.4545 4.6619 0.0010 24 1 1.8839 5.5449 0.0054 25 1 5.9966 5.7328 0.0011 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261063842.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:01 Heat of formation + Delta-G solvation = 32.070742 kcal Electronic energy + Delta-G solvation = -13528.768654 eV Core-core repulsion = 11008.648650 eV Total energy + Delta-G solvation = -2520.120004 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.997 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.77314 -37.15325 -36.14032 -34.27898 -32.60208 -31.90363 -29.43269 -28.40384 -26.20757 -23.29742 -22.88861 -19.98907 -18.51164 -17.68740 -17.10894 -16.16128 -15.83992 -15.69356 -15.28726 -14.86724 -14.46657 -14.37119 -13.07395 -12.98267 -12.81464 -12.68609 -12.35208 -11.92904 -11.72672 -11.04649 -11.04127 -10.71105 -10.33229 -9.36204 -9.24122 -8.34021 -8.29209 -6.72510 0.97597 1.27543 1.44142 1.48536 1.55793 1.66586 2.24185 2.44604 2.94807 3.06684 3.98957 4.28781 4.49312 4.78822 4.80472 5.00326 5.15572 5.20508 5.41433 6.15519 6.29674 6.40833 6.52313 6.74709 7.00347 7.07934 7.41458 8.35985 8.49446 Molecular weight = 272.00amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.010908 C = 0.007061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.329514 B = 2566.376344 C = 3964.561928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.726 5.726 3 C 0.480 3.520 4 N -0.692 5.692 5 C 0.569 3.431 6 N -0.820 5.820 7 N -0.604 5.604 8 C 0.305 3.695 9 C -0.436 4.436 10 H 0.100 0.900 11 C 0.029 3.971 12 N -0.733 5.733 13 Si 0.983 3.017 14 H -0.258 1.258 15 H -0.265 1.265 16 H -0.258 1.258 17 C -0.412 4.412 18 Br -0.070 7.070 19 H 0.042 0.958 20 H 0.042 0.958 21 H 0.100 0.900 22 H 0.410 0.590 23 H 0.409 0.591 24 H 0.411 0.589 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 -5.781 0.020 6.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.362 5.362 3 C 0.237 3.763 4 N -0.434 5.434 5 C 0.206 3.794 6 N -0.371 5.371 7 N -0.338 5.338 8 C 0.176 3.824 9 C -0.469 4.469 10 H 0.118 0.882 11 C -0.196 4.196 12 N -0.354 5.354 13 Si 0.803 3.197 14 H -0.183 1.183 15 H -0.189 1.189 16 H -0.182 1.182 17 C -0.505 4.505 18 Br 0.012 6.988 19 H 0.061 0.939 20 H 0.061 0.939 21 H 0.119 0.881 22 H 0.248 0.752 23 H 0.240 0.760 24 H 0.242 0.758 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.360 -5.320 0.010 6.292 hybrid contribution 0.738 -0.151 0.007 0.753 sum -2.622 -5.471 0.017 6.067 Atomic orbital electron populations 1.21416 0.78464 1.02652 1.00756 1.44299 1.07057 1.03761 1.81063 1.17704 0.86295 0.86811 0.85528 1.67104 1.39707 0.96477 1.40149 1.19670 0.87108 0.86024 0.86572 1.41342 1.08300 1.03535 1.83905 1.69033 1.02662 1.29975 1.32087 1.18417 0.94159 0.84701 0.85105 1.20128 0.90096 0.94917 1.41767 0.88159 1.27017 1.05630 0.94571 0.92383 1.70174 1.39272 0.99048 1.26886 0.85239 0.75564 0.78646 0.80248 1.18263 1.18928 1.18242 1.22275 0.92728 0.92531 1.42935 1.96081 1.75327 1.28485 1.98899 0.93931 0.93945 0.88111 0.75202 0.76005 0.75847 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.19 10.75 127.77 1.37 4.56 15 2 N -0.73 -26.66 5.81 -366.05 -2.13 -28.79 15 3 C 0.48 22.50 7.51 133.18 1.00 23.50 15 4 N -0.69 -33.17 9.69 -195.66 -1.90 -35.07 15 5 C 0.57 28.25 8.66 261.59 2.27 30.52 15 6 N -0.82 -31.76 9.07 -59.88 -0.54 -32.30 15 7 N -0.60 -33.53 8.05 -191.64 -1.54 -35.07 15 8 C 0.31 17.05 6.58 40.17 0.26 17.31 15 9 C -0.44 -23.39 8.84 23.51 0.21 -23.18 15 10 H 0.10 5.11 6.50 -2.91 -0.02 5.10 15 11 C 0.03 1.44 5.50 85.31 0.47 1.91 15 12 N -0.73 -37.90 11.52 21.84 0.25 -37.65 15 13 Si 0.98 37.25 29.56 68.60 2.03 39.27 15 14 H -0.26 -9.55 7.11 99.48 0.71 -8.84 15 15 H -0.27 -9.42 7.11 99.48 0.71 -8.71 15 16 H -0.26 -9.54 7.11 99.48 0.71 -8.83 15 17 C -0.41 -20.72 6.35 23.21 0.15 -20.58 15 18 Br -0.07 -2.85 30.62 -20.37 -0.62 -3.47 15 19 H 0.04 1.28 8.14 -2.39 -0.02 1.26 15 20 H 0.04 1.27 8.14 -2.39 -0.02 1.25 15 21 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 22 H 0.41 13.72 7.36 -92.71 -0.68 13.04 15 23 H 0.41 13.19 8.94 -92.71 -0.83 12.36 15 24 H 0.41 15.01 8.94 -92.71 -0.83 14.18 15 25 H 0.28 13.10 8.29 -92.71 -0.77 12.33 15 Total: -1.00 -64.14 244.28 0.21 -63.93 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: -1.07 Total: 35.12 kcal Atomic # 6 Polarization: 28.31 SS G_CDS: 5.73 Total: 34.03 kcal Atomic # 7 Polarization: -163.02 SS G_CDS: -5.86 Total: -168.88 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.27 kcal Atomic # 35 Polarization: -2.85 SS G_CDS: -0.62 Total: -3.47 kcal Total: -64.14 0.21 -63.93 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261063842.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.997 kcal (2) G-P(sol) polarization free energy of solvation -64.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds