Wall clock time and date at job start Mon Mar 30 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28432 * 125.21230 * 2 1 4 4 C 1.30888 * 111.06554 * 180.02562 * 3 2 1 5 5 C 1.39639 * 107.96198 * 0.02562 * 4 3 2 6 6 Br 1.89100 * 127.34908 * 180.02562 * 5 4 3 7 7 C 1.36956 * 125.21209 * 180.32294 * 2 1 3 8 8 C 1.46164 * 126.95325 * 0.02562 * 7 2 1 9 9 O 1.21375 * 120.00062 * 0.19728 * 8 7 2 10 10 C 1.50700 * 120.00106 * 180.20420 * 8 7 2 11 11 C 1.50703 * 109.47176 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99904 * 359.97438 * 11 10 8 13 13 C 1.37880 * 119.99813 * 179.97438 * 11 10 8 14 14 N 1.31514 * 119.99917 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99778 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47294 * 59.99893 * 15 13 11 17 17 H 1.48497 * 109.46941 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47212 * 299.99979 * 15 13 11 19 19 H 1.08999 * 109.47822 * 89.97226 * 1 2 3 20 20 H 1.09008 * 109.47019 * 209.97579 * 1 2 3 21 21 H 1.08997 * 109.47192 * 329.96441 * 1 2 3 22 22 H 1.08003 * 126.02023 * 179.97438 * 4 3 2 23 23 H 1.09004 * 109.46854 * 299.99761 * 10 8 7 24 24 H 1.08996 * 109.47283 * 59.99387 * 10 8 7 25 25 H 0.97001 * 119.99956 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2056 1.0493 0.0000 4 6 3.4747 0.7294 -0.0005 5 6 3.5677 -0.6639 -0.0015 6 35 5.1439 -1.7085 -0.0020 7 6 2.2547 -1.1189 -0.0063 8 6 1.8070 -2.5103 -0.0147 9 8 0.6206 -2.7661 -0.0202 10 6 2.8186 -3.6273 -0.0162 11 6 2.1027 -4.9534 -0.0247 12 1 1.0231 -4.9842 -0.0281 13 6 2.8259 -6.1273 -0.0280 14 7 4.1405 -6.0897 -0.0243 15 14 1.9385 -7.7710 -0.0377 16 1 1.0905 -7.8686 -1.2529 17 1 2.9353 -8.8716 -0.0406 18 1 1.0841 -7.8794 1.1720 19 1 -0.3635 0.0005 -1.0276 20 1 -0.3633 -0.8903 0.5135 21 1 -0.3633 0.8896 0.5144 22 1 4.3041 1.4212 -0.0011 23 1 3.4467 -3.5475 -0.9036 24 1 3.4401 -3.5560 0.8763 25 1 4.6493 -6.9156 -0.0271 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306176258.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:11 Heat of formation + Delta-G solvation = 43.686602 kcal Electronic energy + Delta-G solvation = -13392.798385 eV Core-core repulsion = 10840.889332 eV Total energy + Delta-G solvation = -2551.909054 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.990 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.33236 -38.24672 -33.65144 -32.88961 -31.71487 -29.77170 -28.68080 -26.83639 -24.36974 -21.95749 -20.94799 -19.09847 -16.91521 -16.17681 -16.00801 -15.10209 -14.65826 -14.01256 -13.80830 -13.47120 -13.14269 -12.85506 -12.35396 -12.19002 -11.30807 -11.08573 -10.85571 -10.78971 -10.53791 -10.06683 -9.92432 -9.09599 -8.87289 -8.85029 -8.46262 -8.40004 -6.05047 -4.07053 1.25650 1.87339 2.57427 2.77304 3.35096 3.38422 3.38426 3.42638 4.38246 4.59392 4.69498 5.10324 5.19486 5.31947 5.39070 5.50156 5.59375 6.31048 6.45661 6.75572 7.24126 7.34301 7.87796 8.02648 8.15909 8.41331 8.99865 9.57027 11.05864 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.008633 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.808491 B = 3242.430516 C = 4448.788385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.263 5.263 3 N -0.284 5.284 4 C 0.023 3.977 5 C -0.164 4.164 6 Br 0.020 6.980 7 C -0.018 4.018 8 C 0.417 3.583 9 O -0.461 6.461 10 C -0.011 4.011 11 C -0.522 4.522 12 H 0.071 0.929 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 H 0.085 0.915 20 H 0.111 0.889 21 H 0.092 0.908 22 H 0.191 0.809 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 12.286 0.150 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.051 5.051 3 N -0.117 5.117 4 C -0.155 4.155 5 C -0.255 4.255 6 Br 0.104 6.896 7 C -0.147 4.147 8 C 0.294 3.706 9 O -0.335 6.335 10 C -0.049 4.049 11 C -0.560 4.560 12 H 0.089 0.911 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 H 0.103 0.897 20 H 0.130 0.870 21 H 0.111 0.889 22 H 0.208 0.792 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.066 12.571 0.151 12.572 hybrid contribution -0.104 -1.146 -0.038 1.151 sum -0.038 11.425 0.112 11.425 Atomic orbital electron populations 1.22375 0.72331 1.05882 1.04800 1.45816 1.07896 1.02245 1.49125 1.73129 1.03632 1.14331 1.20559 1.23458 0.93687 0.93045 1.05305 1.22748 0.92652 0.95147 1.14905 1.96772 1.26820 1.68489 1.97539 1.23045 0.90189 0.92231 1.09281 1.22913 0.91731 0.85840 0.70095 1.90386 1.19922 1.85906 1.37296 1.19747 0.93915 0.90280 1.00915 1.21091 0.93976 0.89402 1.51565 0.91098 1.24945 0.94838 0.99238 0.94995 1.69958 1.04995 1.27844 1.50119 0.86554 0.79258 0.82831 0.78770 1.20187 1.21298 1.20179 0.89672 0.87043 0.88905 0.79237 0.91398 0.91408 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 10.81 59.85 0.65 1.76 15 2 N -0.26 -4.40 3.76 -63.96 -0.24 -4.64 15 3 N -0.28 -4.55 11.89 30.59 0.36 -4.18 15 4 C 0.02 0.34 12.02 -17.43 -0.21 0.13 15 5 C -0.16 -2.86 6.72 -38.79 -0.26 -3.13 15 6 Br 0.02 0.34 30.42 -68.01 -2.07 -1.73 15 7 C -0.02 -0.35 6.94 -82.13 -0.57 -0.92 15 8 C 0.42 9.29 7.10 -31.13 -0.22 9.06 15 9 O -0.46 -10.71 13.81 5.47 0.08 -10.64 15 10 C -0.01 -0.28 3.65 -29.03 -0.11 -0.39 15 11 C -0.52 -14.61 8.92 -34.44 -0.31 -14.92 15 12 H 0.07 2.02 6.75 -52.49 -0.35 1.67 15 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 14 N -0.89 -25.35 13.29 55.43 0.74 -24.62 15 15 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 15 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 19 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 20 H 0.11 1.56 6.34 -51.92 -0.33 1.23 15 21 H 0.09 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.19 2.14 8.06 -52.48 -0.42 1.71 15 23 H 0.07 1.73 7.17 -51.93 -0.37 1.36 15 24 H 0.07 1.73 7.18 -51.93 -0.37 1.36 15 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 LS Contribution 245.74 15.07 3.70 3.70 Total: -1.00 -30.48 245.74 -5.41 -35.89 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: -1.83 Total: -3.52 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.12 Total: -6.77 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.86 Total: -33.44 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 35 Polarization: 0.34 SS G_CDS: -2.07 Total: -1.73 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.48 -5.41 -35.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306176258.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.575 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds