Wall clock time and date at job start Mon Mar 30 2020 06:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28432 * 125.21230 * 2 1 4 4 C 1.30888 * 111.06554 * 180.02562 * 3 2 1 5 5 C 1.39639 * 107.96198 * 0.02562 * 4 3 2 6 6 Br 1.89100 * 127.34908 * 180.02562 * 5 4 3 7 7 C 1.36956 * 125.21209 * 180.32294 * 2 1 3 8 8 C 1.46164 * 126.95325 * 0.02562 * 7 2 1 9 9 O 1.21375 * 120.00062 * 0.19728 * 8 7 2 10 10 C 1.50700 * 120.00106 * 180.20420 * 8 7 2 11 11 C 1.50703 * 109.47176 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99904 * 359.97438 * 11 10 8 13 13 C 1.37880 * 119.99813 * 179.97438 * 11 10 8 14 14 N 1.31514 * 119.99917 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99778 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47294 * 59.99893 * 15 13 11 17 17 H 1.48497 * 109.46941 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47212 * 299.99979 * 15 13 11 19 19 H 1.08999 * 109.47822 * 89.97226 * 1 2 3 20 20 H 1.09008 * 109.47019 * 209.97579 * 1 2 3 21 21 H 1.08997 * 109.47192 * 329.96441 * 1 2 3 22 22 H 1.08003 * 126.02023 * 179.97438 * 4 3 2 23 23 H 1.09004 * 109.46854 * 299.99761 * 10 8 7 24 24 H 1.08996 * 109.47283 * 59.99387 * 10 8 7 25 25 H 0.97001 * 119.99956 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2056 1.0493 0.0000 4 6 3.4747 0.7294 -0.0005 5 6 3.5677 -0.6639 -0.0015 6 35 5.1439 -1.7085 -0.0020 7 6 2.2547 -1.1189 -0.0063 8 6 1.8070 -2.5103 -0.0147 9 8 0.6206 -2.7661 -0.0202 10 6 2.8186 -3.6273 -0.0162 11 6 2.1027 -4.9534 -0.0247 12 1 1.0231 -4.9842 -0.0281 13 6 2.8259 -6.1273 -0.0280 14 7 4.1405 -6.0897 -0.0243 15 14 1.9385 -7.7710 -0.0377 16 1 1.0905 -7.8686 -1.2529 17 1 2.9353 -8.8716 -0.0406 18 1 1.0841 -7.8794 1.1720 19 1 -0.3635 0.0005 -1.0276 20 1 -0.3633 -0.8903 0.5135 21 1 -0.3633 0.8896 0.5144 22 1 4.3041 1.4212 -0.0011 23 1 3.4467 -3.5475 -0.9036 24 1 3.4401 -3.5560 0.8763 25 1 4.6493 -6.9156 -0.0271 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306176258.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:11 Heat of formation + Delta-G solvation = 24.515291 kcal Electronic energy + Delta-G solvation = -13393.629716 eV Core-core repulsion = 10840.889332 eV Total energy + Delta-G solvation = -2552.740384 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.990 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.65031 -39.99522 -35.24499 -34.63762 -33.14311 -31.34422 -30.44321 -27.99612 -26.27923 -23.57470 -22.28628 -20.59538 -18.68861 -17.81293 -17.47881 -16.88516 -16.26988 -15.61439 -15.55035 -14.75304 -14.69001 -14.16870 -13.95612 -13.45529 -13.23959 -12.88206 -12.60156 -12.33802 -12.08457 -12.06979 -11.68628 -10.64743 -10.56432 -10.53336 -10.38872 -9.78848 -8.17562 -6.26839 -0.25792 0.53120 1.32525 1.43517 1.45337 1.50996 1.55029 1.73717 2.43256 3.03115 3.16505 3.47392 3.82017 4.20840 4.24103 4.33006 4.50768 4.70400 5.10482 5.22263 5.33423 5.50330 5.74493 6.09897 6.55827 6.79134 6.83767 7.40757 8.92784 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.008633 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.808491 B = 3242.430516 C = 4448.788385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.259 5.259 3 N -0.276 5.276 4 C 0.033 3.967 5 C -0.164 4.164 6 Br 0.016 6.984 7 C -0.049 4.049 8 C 0.420 3.580 9 O -0.478 6.478 10 C -0.005 4.005 11 C -0.548 4.548 12 H 0.058 0.942 13 C 0.018 3.982 14 N -0.913 5.913 15 Si 0.958 3.042 16 H -0.273 1.273 17 H -0.278 1.278 18 H -0.273 1.273 19 H 0.099 0.901 20 H 0.097 0.903 21 H 0.126 0.874 22 H 0.230 0.770 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 13.285 0.128 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.047 5.047 3 N -0.109 5.109 4 C -0.144 4.144 5 C -0.255 4.255 6 Br 0.100 6.900 7 C -0.178 4.178 8 C 0.299 3.701 9 O -0.354 6.354 10 C -0.043 4.043 11 C -0.586 4.586 12 H 0.076 0.924 13 C -0.182 4.182 14 N -0.552 5.552 15 Si 0.783 3.217 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.198 1.198 19 H 0.118 0.882 20 H 0.116 0.884 21 H 0.144 0.856 22 H 0.246 0.754 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.170 13.581 0.129 13.583 hybrid contribution -0.018 -1.374 -0.030 1.375 sum -0.188 12.206 0.099 12.208 Atomic orbital electron populations 1.22644 0.70504 1.06833 1.06078 1.46110 1.08990 1.01446 1.48112 1.73179 1.04015 1.13708 1.20026 1.24069 0.94343 0.92388 1.03585 1.22932 0.91950 0.96295 1.14342 1.96774 1.26757 1.68988 1.97474 1.22447 0.91393 0.91470 1.12494 1.22507 0.90819 0.87117 0.69638 1.90367 1.20195 1.86598 1.38255 1.19538 0.94150 0.90576 1.00010 1.21361 0.93684 0.91311 1.52252 0.92370 1.25689 0.95601 1.02470 0.94437 1.70044 1.06042 1.28838 1.50297 0.85607 0.78348 0.78871 0.78828 1.19801 1.20274 1.19775 0.88215 0.88422 0.85615 0.75391 0.92406 0.92410 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.88 10.81 127.77 1.38 3.26 15 2 N -0.26 -8.17 3.76 -356.27 -1.34 -9.51 15 3 N -0.28 -8.05 11.89 -57.15 -0.68 -8.73 15 4 C 0.03 0.89 12.02 85.17 1.02 1.91 15 5 C -0.16 -5.51 6.72 22.78 0.15 -5.36 15 6 Br 0.02 0.54 30.42 -20.37 -0.62 -0.08 15 7 C -0.05 -1.84 6.94 40.57 0.28 -1.55 15 8 C 0.42 18.95 7.10 27.74 0.20 19.15 15 9 O -0.48 -22.56 13.81 -3.33 -0.05 -22.61 15 10 C -0.01 -0.27 3.65 29.10 0.11 -0.16 15 11 C -0.55 -31.18 8.92 25.60 0.23 -30.96 15 12 H 0.06 3.39 6.75 -2.91 -0.02 3.37 15 13 C 0.02 1.00 5.46 84.66 0.46 1.46 15 14 N -0.91 -52.21 13.29 21.45 0.28 -51.93 15 15 Si 0.96 44.08 29.54 68.60 2.03 46.11 15 16 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 17 H -0.28 -12.25 7.11 99.48 0.71 -11.55 15 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 19 H 0.10 2.11 8.14 -2.39 -0.02 2.09 15 20 H 0.10 2.66 6.34 -2.38 -0.02 2.65 15 21 H 0.13 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.23 4.21 8.06 -2.91 -0.02 4.18 15 23 H 0.06 3.02 7.17 -2.38 -0.02 3.01 15 24 H 0.06 3.02 7.18 -2.39 -0.02 3.00 15 25 H 0.27 14.36 8.31 -92.71 -0.77 13.59 15 Total: -1.00 -64.39 245.74 4.68 -59.71 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: 1.22 Total: -0.71 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 3.83 Total: -12.25 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -1.73 Total: -70.17 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.05 Total: -22.61 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 35 Polarization: 0.54 SS G_CDS: -0.62 Total: -0.08 kcal Total: -64.39 4.68 -59.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306176258.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.221 kcal (2) G-P(sol) polarization free energy of solvation -64.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds