Wall clock time and date at job start Mon Mar 30 2020 06:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86795 * 119.99694 * 2 1 4 4 H 1.48500 * 109.47347 * 239.99692 * 3 2 1 5 5 H 1.48499 * 109.47336 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47119 * 120.00160 * 3 2 1 7 7 C 1.40043 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99967 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00312 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00198 * 359.97438 * 9 7 2 11 11 N 1.34772 * 120.00120 * 179.97438 * 9 7 2 12 12 C 1.46500 * 120.00011 * 179.97438 * 11 9 7 13 13 C 1.50704 * 109.47074 * 180.02562 * 12 11 9 14 14 C 1.34858 * 125.88394 * 95.00332 * 13 12 11 15 15 C 1.40929 * 107.42973 * 180.27742 * 14 13 12 16 16 Br 1.89097 * 126.29683 * 179.75768 * 15 14 13 17 17 C 1.34898 * 107.40813 * 359.59551 * 15 14 13 18 18 N 1.36336 * 125.87879 * 275.03579 * 13 12 11 19 19 H 0.96998 * 125.63543 * 359.95076 * 18 13 12 20 20 H 0.96999 * 120.00231 * 0.02562 * 1 2 3 21 21 H 0.97004 * 120.00232 * 359.97438 * 11 9 7 22 22 H 1.08997 * 109.47733 * 59.99809 * 12 11 9 23 23 H 1.09001 * 109.47035 * 299.99537 * 12 11 9 24 24 H 1.08002 * 126.28178 * 0.02562 * 14 13 12 25 25 H 1.08002 * 125.90014 * 180.16183 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.0945 1.6965 -1.2124 5 1 1.2756 2.7464 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4806 0.0005 11 7 1.9490 -3.6476 0.0005 12 6 1.2166 -4.9164 0.0011 13 6 2.1959 -6.0618 0.0016 14 6 2.6372 -6.7240 1.0904 15 6 3.5404 -7.7108 0.6470 16 35 4.4788 -8.9398 1.7356 17 6 3.6098 -7.6197 -0.6971 18 7 2.7889 -6.6066 -1.0985 19 1 2.6499 -6.3212 -2.0151 20 1 -0.4850 0.8400 -0.0004 21 1 2.9191 -3.6476 0.0002 22 1 0.5895 -4.9744 -0.8885 23 1 0.5903 -4.9739 0.8914 24 1 2.3538 -6.5307 2.1145 25 1 4.2140 -8.2390 -1.3435 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306538138.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:27 Heat of formation + Delta-G solvation = 1.804056 kcal Electronic energy + Delta-G solvation = -12848.669875 eV Core-core repulsion = 10294.944658 eV Total energy + Delta-G solvation = -2553.725217 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.990 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.16520 -37.25511 -33.55149 -32.37007 -31.99135 -30.01993 -28.92294 -26.53954 -24.44670 -20.44165 -20.09820 -19.75311 -18.01956 -16.76201 -15.37617 -14.74112 -14.22302 -14.09686 -13.73910 -13.48523 -12.89197 -12.57857 -12.36780 -11.82674 -11.40464 -11.20469 -10.98688 -10.91665 -10.49964 -10.29030 -10.10047 -8.88288 -8.68884 -8.21342 -7.61840 -7.61196 -6.22440 -4.68636 1.87217 2.09999 2.73993 3.13915 3.19052 3.21009 3.37392 4.09015 4.54158 4.92780 5.02975 5.15390 5.34618 5.66213 5.85241 6.00190 6.21082 6.26475 6.75465 7.01416 7.39738 7.47070 7.85154 7.99374 8.27463 8.98359 9.45497 10.54583 10.72512 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.045787 B = 0.003736 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.379065 B = 7491.893822 C = 7744.437586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.580 6.580 11 N -0.765 5.765 12 C 0.197 3.803 13 C 0.030 3.970 14 C -0.160 4.160 15 C -0.169 4.169 16 Br -0.045 7.045 17 C 0.025 3.975 18 N -0.542 5.542 19 H 0.421 0.579 20 H 0.269 0.731 21 H 0.382 0.618 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.144 0.856 25 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.518 -16.394 -0.240 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.422 5.422 12 C 0.072 3.928 13 C -0.084 4.084 14 C -0.186 4.186 15 C -0.255 4.255 16 Br 0.039 6.961 17 C -0.111 4.111 18 N -0.138 5.138 19 H 0.258 0.742 20 H 0.080 0.920 21 H 0.214 0.786 22 H 0.075 0.925 23 H 0.093 0.907 24 H 0.162 0.838 25 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.710 -16.668 0.012 18.807 hybrid contribution 0.756 1.070 -0.650 1.462 sum 9.466 -15.598 -0.638 18.257 Atomic orbital electron populations 1.70005 1.07060 1.27475 1.35090 1.25709 0.94640 1.00317 0.92591 0.86414 0.79803 0.80941 0.79480 1.19314 1.20526 1.19213 1.20835 0.93578 0.89279 1.54448 0.91443 1.18243 0.87204 0.82284 0.76388 1.90609 1.14036 1.86699 1.54987 1.46270 1.08736 1.04159 1.83007 1.19349 0.90859 0.80464 1.02158 1.20748 1.01850 0.99976 0.85813 1.20622 1.01203 0.98029 0.98697 1.21019 1.07668 1.03418 0.93404 1.96537 1.74594 1.57468 1.67548 1.21639 0.99729 0.95387 0.94359 1.42061 1.35103 1.27209 1.09398 0.74162 0.91978 0.78624 0.92477 0.90719 0.83779 0.81170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.82 11.83 55.55 0.66 -22.16 15 2 C 0.09 2.42 5.50 -17.37 -0.10 2.32 15 3 Si 0.91 19.96 29.56 -169.99 -5.02 14.93 15 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 7 C -0.54 -15.20 9.54 -35.63 -0.34 -15.54 15 8 H 0.07 1.73 7.85 -52.48 -0.41 1.31 15 9 C 0.55 15.49 7.75 -12.99 -0.10 15.39 15 10 O -0.58 -18.48 15.02 5.20 0.08 -18.40 15 11 N -0.77 -16.65 5.54 -62.90 -0.35 -16.99 15 12 C 0.20 3.64 6.21 -5.19 -0.03 3.60 15 13 C 0.03 0.44 6.53 -81.79 -0.53 -0.09 15 14 C -0.16 -2.36 10.75 -39.76 -0.43 -2.79 15 15 C -0.17 -2.23 6.57 -39.75 -0.26 -2.49 15 16 Br -0.05 -0.53 34.09 -68.01 -2.32 -2.85 15 17 C 0.02 0.28 11.91 -16.69 -0.20 0.08 15 18 N -0.54 -6.51 6.08 -9.09 -0.06 -6.56 15 19 H 0.42 4.08 8.96 -40.82 -0.37 3.71 15 20 H 0.27 7.27 8.29 -40.82 -0.34 6.93 15 21 H 0.38 7.55 8.44 -40.82 -0.34 7.20 15 22 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 23 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 24 H 0.14 2.09 8.06 -52.49 -0.42 1.67 15 25 H 0.17 1.40 8.06 -52.49 -0.42 0.98 15 LS Contribution 254.15 15.07 3.83 3.83 Total: -1.00 -33.37 254.15 -7.12 -40.49 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -1.95 Total: 7.24 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.99 Total: 0.47 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.25 Total: -45.72 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.08 Total: -18.40 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.32 Total: -2.85 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -33.37 -7.12 -40.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306538138.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.294 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds