Wall clock time and date at job start Mon Mar 30 2020 06:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86795 * 119.99694 * 2 1 4 4 H 1.48500 * 109.47347 * 239.99692 * 3 2 1 5 5 H 1.48499 * 109.47336 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47119 * 120.00160 * 3 2 1 7 7 C 1.40043 * 119.99969 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99967 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00312 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00198 * 359.97438 * 9 7 2 11 11 N 1.34772 * 120.00120 * 179.97438 * 9 7 2 12 12 C 1.46500 * 120.00011 * 179.97438 * 11 9 7 13 13 C 1.50704 * 109.47074 * 180.02562 * 12 11 9 14 14 C 1.34858 * 125.88394 * 95.00332 * 13 12 11 15 15 C 1.40929 * 107.42973 * 180.27742 * 14 13 12 16 16 Br 1.89097 * 126.29683 * 179.75768 * 15 14 13 17 17 C 1.34898 * 107.40813 * 359.59551 * 15 14 13 18 18 N 1.36336 * 125.87879 * 275.03579 * 13 12 11 19 19 H 0.96998 * 125.63543 * 359.95076 * 18 13 12 20 20 H 0.96999 * 120.00231 * 0.02562 * 1 2 3 21 21 H 0.97004 * 120.00232 * 359.97438 * 11 9 7 22 22 H 1.08997 * 109.47733 * 59.99809 * 12 11 9 23 23 H 1.09001 * 109.47035 * 299.99537 * 12 11 9 24 24 H 1.08002 * 126.28178 * 0.02562 * 14 13 12 25 25 H 1.08002 * 125.90014 * 180.16183 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.0945 1.6965 -1.2124 5 1 1.2756 2.7464 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4806 0.0005 11 7 1.9490 -3.6476 0.0005 12 6 1.2166 -4.9164 0.0011 13 6 2.1959 -6.0618 0.0016 14 6 2.6372 -6.7240 1.0904 15 6 3.5404 -7.7108 0.6470 16 35 4.4788 -8.9398 1.7356 17 6 3.6098 -7.6197 -0.6971 18 7 2.7889 -6.6066 -1.0985 19 1 2.6499 -6.3212 -2.0151 20 1 -0.4850 0.8400 -0.0004 21 1 2.9191 -3.6476 0.0002 22 1 0.5895 -4.9744 -0.8885 23 1 0.5903 -4.9739 0.8914 24 1 2.3538 -6.5307 2.1145 25 1 4.2140 -8.2390 -1.3435 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306538138.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:26 Heat of formation + Delta-G solvation = -22.782068 kcal Electronic energy + Delta-G solvation = -12849.736009 eV Core-core repulsion = 10294.944658 eV Total energy + Delta-G solvation = -2554.791352 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.990 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.23689 -39.30758 -35.39335 -34.45879 -33.03528 -31.31311 -30.17466 -28.39529 -25.99005 -21.88454 -21.46195 -21.12729 -19.63489 -18.29155 -17.41593 -16.31900 -15.90933 -15.60680 -15.11364 -14.69372 -14.44096 -14.08670 -13.65850 -13.41453 -13.14522 -12.93433 -12.66932 -12.61109 -12.06009 -11.95341 -11.06420 -10.92466 -10.01525 -9.71262 -9.54823 -9.13599 -8.29298 -6.86929 0.89777 1.04641 1.40942 1.43880 1.55647 1.62548 2.25452 2.35310 2.46201 3.27005 3.59693 3.80659 4.17234 4.28263 4.49465 4.70098 4.82639 5.06286 5.31207 5.63133 5.85039 5.89245 6.14460 6.23378 6.53466 6.85863 7.49502 8.46051 8.65401 Molecular weight = 271.99amu Principal moments of inertia in cm(-1) A = 0.045787 B = 0.003736 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.379065 B = 7491.893822 C = 7744.437586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.573 4.573 8 H 0.086 0.914 9 C 0.539 3.461 10 O -0.631 6.631 11 N -0.751 5.751 12 C 0.204 3.796 13 C 0.012 3.988 14 C -0.164 4.164 15 C -0.194 4.194 16 Br -0.033 7.033 17 C 0.054 3.946 18 N -0.533 5.533 19 H 0.432 0.568 20 H 0.275 0.725 21 H 0.394 0.606 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.138 0.862 25 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.806 -16.677 -0.884 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.609 4.609 8 H 0.105 0.895 9 C 0.344 3.656 10 O -0.518 6.518 11 N -0.406 5.406 12 C 0.080 3.920 13 C -0.101 4.101 14 C -0.190 4.190 15 C -0.280 4.280 16 Br 0.051 6.949 17 C -0.083 4.083 18 N -0.129 5.129 19 H 0.272 0.728 20 H 0.085 0.915 21 H 0.227 0.773 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.156 0.844 25 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 11.039 -16.997 -0.645 20.277 hybrid contribution 0.075 1.008 -0.438 1.102 sum 11.114 -15.988 -1.083 19.502 Atomic orbital electron populations 1.70171 1.09484 1.29095 1.36274 1.26963 0.95534 1.04926 0.91198 0.85072 0.78206 0.74758 0.80276 1.17769 1.19895 1.17962 1.21388 0.94712 0.90050 1.54794 0.89540 1.18584 0.86809 0.84152 0.76082 1.90564 1.16099 1.87859 1.57274 1.45910 1.09230 1.04101 1.81330 1.19196 0.91428 0.80322 1.01087 1.20056 1.02914 0.99966 0.87202 1.20708 1.01405 0.98474 0.98460 1.21167 1.08323 1.03986 0.94481 1.96544 1.74119 1.56750 1.67514 1.22253 0.97869 0.93961 0.94196 1.42030 1.34531 1.26971 1.09343 0.72752 0.91481 0.77254 0.93087 0.92378 0.84431 0.77303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.91 11.83 21.83 0.26 -49.66 15 2 C 0.03 1.61 5.50 85.30 0.47 2.08 15 3 Si 1.00 40.50 29.56 68.60 2.03 42.53 15 4 H -0.25 -9.64 7.11 99.48 0.71 -8.93 15 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 6 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 7 C -0.57 -32.16 9.54 24.83 0.24 -31.92 15 8 H 0.09 4.35 7.85 -2.91 -0.02 4.33 15 9 C 0.54 30.88 7.75 86.36 0.67 31.55 15 10 O -0.63 -41.78 15.02 -4.32 -0.06 -41.84 15 11 N -0.75 -33.07 5.54 -471.15 -2.61 -35.68 15 12 C 0.20 7.71 6.21 85.63 0.53 8.24 15 13 C 0.01 0.35 6.53 41.08 0.27 0.62 15 14 C -0.16 -4.71 10.75 22.15 0.24 -4.47 15 15 C -0.19 -4.71 6.57 22.16 0.15 -4.56 15 16 Br -0.03 -0.71 34.09 -20.37 -0.69 -1.40 15 17 C 0.05 1.05 11.91 83.21 0.99 2.04 15 18 N -0.53 -11.58 6.08 -182.66 -1.11 -12.69 15 19 H 0.43 7.36 8.96 -92.71 -0.83 6.52 15 20 H 0.28 15.17 8.29 -92.71 -0.77 14.40 15 21 H 0.39 15.40 8.44 -92.71 -0.78 14.62 15 22 H 0.05 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.06 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.14 4.02 8.06 -2.91 -0.02 4.00 15 25 H 0.21 2.41 8.06 -2.91 -0.02 2.38 15 Total: -1.00 -73.68 254.15 0.98 -72.70 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.37 Total: 22.48 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 3.55 Total: 3.57 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -3.46 Total: -98.03 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -0.06 Total: -41.84 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -0.69 Total: -1.40 kcal Total: -73.68 0.98 -72.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306538138.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.919 kcal (2) G-P(sol) polarization free energy of solvation -73.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds