Wall clock time and date at job start Mon Mar 30 2020 06:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29588 * 1 3 3 Si 1.86797 * 120.00281 * 2 1 4 4 H 1.48500 * 109.47316 * 240.00298 * 3 2 1 5 5 H 1.48495 * 109.47206 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47031 * 120.00145 * 3 2 1 7 7 C 1.46365 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.41044 * 119.99697 * 359.97438 * 7 2 1 10 10 C 1.40817 * 119.81814 * 180.02562 * 9 7 2 11 11 C 1.38565 * 118.94605 * 179.97438 * 10 9 7 12 12 Br 1.89099 * 120.73736 * 179.97438 * 11 10 9 13 13 C 1.38803 * 118.52801 * 0.02562 * 11 10 9 14 14 N 1.48016 * 120.23141 * 180.02562 * 13 11 10 15 15 O 1.31706 * 120.00040 * 179.97438 * 14 13 11 16 16 O 1.31702 * 120.00534 * 359.97193 * 14 13 11 17 17 C 1.39446 * 119.53029 * 359.97438 * 13 11 10 18 18 N 1.30980 * 121.04966 * 0.26165 * 17 13 11 19 19 H 0.97005 * 119.99644 * 359.97438 * 1 2 3 20 20 H 1.08003 * 120.52593 * 359.97438 * 10 9 7 21 21 H 1.08002 * 119.47261 * 179.97438 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2959 0.0000 0.0000 3 14 2.2299 1.6177 0.0000 4 1 3.0837 1.6964 -1.2125 5 1 1.2651 2.7464 0.0006 6 1 3.0837 1.6963 1.2125 7 6 2.0277 -1.2676 -0.0006 8 1 3.1077 -1.2676 -0.0010 9 6 1.3224 -2.4890 -0.0006 10 6 2.0303 -3.7063 -0.0006 11 6 1.3192 -4.8956 0.0000 12 35 2.2182 -6.5592 -0.0007 13 6 -0.0677 -4.8387 0.0000 14 7 -0.8647 -6.0860 0.0011 15 8 -2.1804 -6.0267 0.0016 16 8 -0.2583 -7.2551 0.0016 17 6 -0.7047 -3.5983 -0.0001 18 7 -0.0151 -2.4847 -0.0052 19 1 -0.4850 0.8401 0.0004 20 1 3.1103 -3.7129 -0.0010 21 1 -1.7839 -3.5551 -0.0005 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306611021.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:41 Heat of formation + Delta-G solvation = 35.963398 kcal Electronic energy + Delta-G solvation = -12991.875783 eV Core-core repulsion = 10303.798732 eV Total energy + Delta-G solvation = -2688.077052 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.84289 -38.87745 -36.08871 -34.88000 -33.86176 -32.80232 -30.87112 -29.00814 -26.08813 -24.10805 -23.12792 -20.05861 -19.02830 -18.57211 -17.74655 -16.64793 -16.51470 -16.20483 -15.03056 -14.61114 -14.33664 -13.88522 -13.37555 -13.10805 -13.06955 -12.56506 -12.39071 -12.05056 -11.72359 -11.46333 -11.35171 -10.43732 -10.30165 -10.28122 -10.12249 -9.05052 -7.25627 -1.22356 0.46185 0.49345 0.57688 1.01453 1.37534 1.50157 1.59409 2.04847 2.28293 3.19024 3.63730 3.95483 4.03934 4.36179 4.55854 4.65824 4.75220 5.12714 5.41735 5.60847 5.72255 6.10894 6.43577 7.37606 7.66763 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.032669 B = 0.006910 C = 0.005715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.871852 B = 4050.928205 C = 4897.956830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.662 5.662 2 C -0.004 4.004 3 Si 1.015 2.985 4 H -0.244 1.244 5 H -0.264 1.264 6 H -0.244 1.244 7 C -0.251 4.251 8 H 0.154 0.846 9 C 0.147 3.853 10 C -0.177 4.177 11 C -0.020 4.020 12 Br -0.015 7.015 13 C -0.198 4.198 14 N 0.047 4.953 15 O -0.364 6.364 16 O -0.299 6.299 17 C 0.217 3.783 18 N -0.476 5.476 19 H 0.317 0.683 20 H 0.164 0.836 21 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.514 6.485 0.004 11.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.278 5.278 2 C -0.239 4.239 3 Si 0.830 3.170 4 H -0.167 1.167 5 H -0.188 1.188 6 H -0.167 1.167 7 C -0.276 4.276 8 H 0.171 0.829 9 C 0.032 3.968 10 C -0.203 4.203 11 C -0.104 4.104 12 Br 0.071 6.929 13 C -0.308 4.308 14 N 0.463 4.537 15 O -0.507 6.507 16 O -0.457 6.457 17 C 0.032 3.968 18 N -0.191 5.191 19 H 0.131 0.869 20 H 0.181 0.819 21 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.389 6.950 -0.003 11.682 hybrid contribution -0.402 -0.757 0.005 0.857 sum 8.987 6.193 0.002 10.914 Atomic orbital electron populations 1.69410 1.10734 1.34078 1.13574 1.29079 0.95972 1.05674 0.93191 0.84706 0.78658 0.71975 0.81612 1.16741 1.18776 1.16745 1.22922 0.97755 0.88250 1.18700 0.82851 1.19247 0.88832 0.93362 0.95353 1.22279 1.01184 0.89164 1.07705 1.21629 0.91603 0.94122 1.03016 1.96604 1.74135 1.25192 1.96947 1.20914 0.90286 0.83144 1.36499 1.50002 1.02171 1.03898 0.97664 1.96078 0.91118 1.96149 1.67343 1.96178 1.71712 1.14557 1.63241 1.22723 1.00769 0.84868 0.88402 1.68821 1.08024 1.24424 1.17818 0.86920 0.81882 0.82618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -24.52 11.60 23.18 0.27 -24.25 14 2 C 0.00 -0.13 5.67 87.14 0.49 0.37 14 3 Si 1.02 22.07 29.64 68.60 2.03 24.11 14 4 H -0.24 -5.07 7.11 99.48 0.71 -4.36 14 5 H -0.26 -5.71 7.11 99.48 0.71 -5.00 14 6 H -0.24 -5.07 7.11 99.48 0.71 -4.36 14 7 C -0.25 -8.70 9.41 25.07 0.24 -8.47 14 8 H 0.15 4.08 7.94 -2.91 -0.02 4.06 14 9 C 0.15 6.13 6.56 40.17 0.26 6.39 14 10 C -0.18 -6.96 9.64 22.98 0.22 -6.74 14 11 C -0.02 -0.90 6.27 22.48 0.14 -0.76 14 12 Br -0.01 -0.58 30.33 -20.37 -0.62 -1.20 14 13 C -0.20 -9.78 6.95 36.80 0.26 -9.52 14 14 N 0.05 2.55 4.98 -45.45 -0.23 2.32 14 15 O -0.36 -20.49 19.18 3.50 0.07 -20.43 14 16 O -0.30 -16.18 16.23 3.51 0.06 -16.12 14 17 C 0.22 10.30 10.75 85.11 0.91 11.21 14 18 N -0.48 -21.88 7.99 -188.90 -1.51 -23.39 14 19 H 0.32 10.01 8.27 -92.70 -0.77 9.24 14 20 H 0.16 5.19 8.06 -2.91 -0.02 5.16 14 21 H 0.16 7.14 7.59 -2.91 -0.02 7.11 14 Total: -1.00 -58.52 228.36 3.88 -54.63 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 1.29 Total: 11.84 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 2.53 Total: -7.51 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -1.47 Total: -45.32 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: 0.12 Total: -36.55 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: 2.03 Total: 24.11 kcal Atomic # 35 Polarization: -0.58 SS G_CDS: -0.62 Total: -1.20 kcal Total: -58.52 3.88 -54.63 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306611021.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.596 kcal (2) G-P(sol) polarization free energy of solvation -58.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds