Wall clock time and date at job start Mon Mar 30 2020 06:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31359 * 1 3 3 Si 1.86797 * 119.99764 * 2 1 4 4 H 1.48503 * 109.47003 * 240.00371 * 3 2 1 5 5 H 1.48504 * 109.47148 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47338 * 119.99906 * 3 2 1 7 7 C 1.38894 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99852 * 180.02562 * 7 2 1 9 9 O 1.34788 * 119.99805 * 359.97438 * 7 2 1 10 10 C 1.34662 * 116.99744 * 179.97438 * 9 7 2 11 11 O 1.21450 * 120.00041 * 0.02562 * 10 9 7 12 12 C 1.48179 * 119.99863 * 179.97438 * 10 9 7 13 13 N 1.33204 * 120.57049 * 0.02562 * 12 10 9 14 14 C 1.31516 * 120.73996 * 180.02562 * 13 12 10 15 15 N 1.31934 * 121.95898 * 0.02562 * 14 13 12 16 16 C 1.32174 * 121.07232 * 359.97438 * 15 14 13 17 17 C 1.38903 * 119.13983 * 0.02562 * 16 15 14 18 18 Br 1.89099 * 120.88570 * 179.97438 * 17 16 15 19 19 H 0.96998 * 120.00195 * 359.97438 * 1 2 3 20 20 H 1.07998 * 119.02364 * 180.02562 * 14 13 12 21 21 H 1.08000 * 120.42336 * 179.72999 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.1012 1.6965 -1.2126 5 1 1.2824 2.7465 -0.0006 6 1 3.1012 1.6965 1.2125 7 6 2.0081 -1.2028 0.0005 8 1 3.0881 -1.2028 0.0010 9 8 1.3341 -2.3701 0.0016 10 6 2.0676 -3.4995 0.0015 11 8 3.2804 -3.4359 0.0010 12 6 1.3949 -4.8198 0.0032 13 7 0.0654 -4.9027 0.0043 14 6 -0.5351 -6.0728 0.0063 15 7 0.1419 -7.2052 0.0078 16 6 1.4636 -7.2098 0.0069 17 6 2.1442 -5.9989 0.0048 18 35 4.0345 -5.9479 0.0041 19 1 -0.4850 0.8400 0.0004 20 1 -1.6145 -6.1077 0.0067 21 1 2.0073 -8.1430 0.0125 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306660339.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:36 Heat of formation + Delta-G solvation = -28.150370 kcal Electronic energy + Delta-G solvation = -13006.833711 eV Core-core repulsion = 10315.976477 eV Total energy + Delta-G solvation = -2690.857233 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.34906 -40.80298 -37.43491 -35.15577 -34.37351 -34.20455 -30.99301 -28.22055 -26.53055 -25.19302 -22.85547 -20.05026 -19.69688 -18.74919 -17.45094 -17.01575 -16.34877 -16.22932 -16.19527 -15.76901 -14.84804 -14.55308 -13.68959 -13.27963 -12.63702 -12.42182 -12.34612 -12.26398 -12.10361 -12.05418 -11.99954 -10.95692 -10.76532 -10.39259 -10.06322 -8.61896 -6.37220 -0.95887 -0.37226 0.31578 1.32507 1.33194 1.50526 1.63380 1.89226 2.33289 2.52051 2.90900 2.94994 2.96387 3.34429 3.66327 4.23732 4.63178 4.99662 5.09419 5.47920 5.71678 6.44526 6.72704 6.80034 7.62937 8.57196 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.028210 B = 0.007265 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.308683 B = 3852.938047 C = 4835.404189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C -0.001 4.001 3 Si 1.023 2.977 4 H -0.258 1.258 5 H -0.259 1.259 6 H -0.258 1.258 7 C -0.416 4.416 8 H 0.094 0.906 9 O -0.209 6.209 10 C 0.414 3.586 11 O -0.526 6.526 12 C 0.178 3.822 13 N -0.504 5.504 14 C 0.306 3.694 15 N -0.499 5.499 16 C 0.199 3.801 17 C -0.173 4.173 18 Br 0.021 6.979 19 H 0.283 0.717 20 H 0.245 0.755 21 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.540 -13.444 0.022 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.204 4.204 3 Si 0.841 3.159 4 H -0.183 1.183 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.112 0.888 9 O -0.115 6.115 10 C 0.260 3.740 11 O -0.422 6.422 12 C 0.031 3.969 13 N -0.221 5.221 14 C 0.019 3.981 15 N -0.213 5.213 16 C 0.029 3.971 17 C -0.258 4.258 18 Br 0.106 6.894 19 H 0.093 0.907 20 H 0.261 0.739 21 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 3.353 -13.226 0.023 13.645 hybrid contribution 0.620 0.845 -0.003 1.048 sum 3.972 -12.382 0.020 13.003 Atomic orbital electron populations 1.70071 1.07998 1.30001 1.44085 1.26739 0.96873 1.02602 0.94186 0.84611 0.77606 0.73616 0.80071 1.18267 1.18297 1.18258 1.21708 0.92796 0.80638 1.54020 0.88822 1.83973 1.39908 1.13752 1.73871 1.20893 0.85919 0.85472 0.81688 1.90767 1.13817 1.87036 1.50589 1.20518 0.90306 0.91623 0.94455 1.68704 1.08982 1.31835 1.12606 1.25988 1.03241 0.80994 0.87883 1.68621 1.08189 1.31396 1.13113 1.24061 0.89774 0.96666 0.86630 1.23976 0.95980 0.96781 1.09060 1.96763 0.96950 1.98876 1.96850 0.90726 0.73920 0.75583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.15 13.67 21.65 0.30 -51.86 14 2 C 0.00 -0.08 5.50 84.92 0.47 0.39 14 3 Si 1.02 42.36 29.55 68.60 2.03 44.39 14 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 14 5 H -0.26 -9.88 7.11 99.48 0.71 -9.17 14 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 14 7 C -0.42 -25.06 9.65 67.98 0.66 -24.40 14 8 H 0.09 5.57 6.86 -2.91 -0.02 5.55 14 9 O -0.21 -12.72 9.59 12.73 0.12 -12.59 14 10 C 0.41 21.79 7.89 70.46 0.56 22.35 14 11 O -0.53 -27.78 12.92 20.00 0.26 -27.52 14 12 C 0.18 7.55 6.79 41.94 0.28 7.83 14 13 N -0.50 -20.08 10.25 -189.20 -1.94 -22.02 14 14 C 0.31 8.69 12.27 180.93 2.22 10.91 14 15 N -0.50 -12.68 10.42 -200.01 -2.08 -14.76 14 16 C 0.20 4.83 11.10 84.80 0.94 5.77 14 17 C -0.17 -5.72 6.30 22.79 0.14 -5.58 14 18 Br 0.02 0.66 30.63 -20.37 -0.62 0.04 14 19 H 0.28 15.01 8.31 -92.71 -0.77 14.24 14 20 H 0.25 4.69 8.06 -2.91 -0.02 4.67 14 21 H 0.23 3.27 8.06 -2.91 -0.02 3.25 14 Total: -1.00 -72.19 229.14 4.61 -67.59 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: 1.28 Total: -0.53 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 5.27 Total: 17.28 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -3.73 Total: -88.64 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: 0.38 Total: -40.12 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 35 Polarization: 0.66 SS G_CDS: -0.62 Total: 0.04 kcal Total: -72.19 4.61 -67.59 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306660339.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.436 kcal (2) G-P(sol) polarization free energy of solvation -72.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds