Wall clock time and date at job start Mon Mar 30 2020 06:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29593 * 1 3 3 Si 1.86797 * 120.00407 * 2 1 4 4 H 1.48499 * 109.47488 * 270.00538 * 3 2 1 5 5 H 1.48505 * 109.46821 * 30.00563 * 3 2 1 6 6 H 1.48501 * 109.47114 * 150.00017 * 3 2 1 7 7 C 1.46360 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99681 * 179.97438 * 7 2 1 9 9 C 1.41035 * 119.99995 * 359.97438 * 7 2 1 10 10 N 1.33781 * 119.82412 * 0.29268 * 9 7 2 11 11 C 1.30954 * 121.58997 * 180.33417 * 10 9 7 12 12 C 1.39493 * 121.04149 * 359.65869 * 11 10 9 13 13 C 1.38751 * 119.53203 * 0.02562 * 12 11 10 14 14 Br 1.89109 * 120.73651 * 179.97438 * 13 12 11 15 15 C 1.38608 * 118.53193 * 0.02562 * 13 12 11 16 16 N 1.48020 * 120.52556 * 180.02562 * 15 13 12 17 17 O 1.31704 * 120.00150 * 90.00303 * 16 15 13 18 18 O 1.31700 * 120.00243 * 269.72162 * 16 15 13 19 19 H 0.97006 * 119.99485 * 359.97438 * 1 2 3 20 20 H 1.07988 * 119.48356 * 179.68372 * 11 10 9 21 21 H 1.08003 * 120.23363 * 180.02562 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2959 0.0000 0.0000 3 14 2.2300 1.6176 0.0000 4 1 2.4775 2.0464 -1.4000 5 1 1.4275 2.6526 0.7002 6 1 3.5276 1.4400 0.7000 7 6 2.0276 -1.2676 -0.0006 8 1 3.1076 -1.2676 -0.0010 9 6 1.3224 -2.4889 -0.0006 10 7 -0.0154 -2.4847 -0.0060 11 6 -0.7049 -3.5980 0.0003 12 6 -0.0676 -4.8388 0.0059 13 6 1.3188 -4.8956 0.0053 14 35 2.2180 -6.5592 0.0135 15 6 2.0301 -3.7060 -0.0004 16 7 3.5103 -3.7150 -0.0018 17 8 4.1677 -3.7238 -1.1430 18 8 4.1700 -3.7088 1.1380 19 1 -0.4850 0.8401 0.0004 20 1 -1.7839 -3.5549 0.0008 21 1 -0.6491 -5.7489 0.0107 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306721057.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:44 Heat of formation + Delta-G solvation = 34.970261 kcal Electronic energy + Delta-G solvation = -13266.064388 eV Core-core repulsion = 10577.944271 eV Total energy + Delta-G solvation = -2688.120117 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97179 -39.32061 -35.99503 -35.33687 -34.17085 -32.83681 -31.07079 -28.66978 -26.98294 -23.72372 -23.32898 -19.95511 -19.28910 -19.21185 -18.17474 -17.17926 -16.43071 -15.76755 -14.99531 -14.89616 -14.37644 -13.94348 -13.36512 -13.17818 -12.98635 -12.58334 -12.47216 -12.17841 -12.09025 -11.76138 -11.57073 -11.44581 -10.57008 -10.24021 -10.21203 -8.93036 -7.19374 -1.15907 -0.02571 0.11520 0.41700 0.53900 1.28708 1.37234 1.43844 2.03726 2.32115 3.18096 3.82040 3.83736 4.15804 4.28447 4.56737 4.76093 4.83939 5.00299 5.36042 5.64727 5.71999 5.86830 6.21969 7.44953 7.83611 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.032675 B = 0.008013 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.716523 B = 3493.569277 C = 4202.186505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.688 5.688 2 C 0.030 3.970 3 Si 0.994 3.006 4 H -0.251 1.251 5 H -0.241 1.241 6 H -0.263 1.263 7 C -0.416 4.416 8 H 0.078 0.922 9 C 0.247 3.753 10 N -0.478 5.478 11 C 0.170 3.830 12 C -0.271 4.271 13 C 0.028 3.972 14 Br -0.035 7.035 15 C -0.219 4.219 16 N 0.020 4.980 17 O -0.186 6.186 18 O -0.188 6.188 19 H 0.309 0.691 20 H 0.193 0.807 21 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 -3.935 0.024 5.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.304 5.304 2 C -0.203 4.203 3 Si 0.811 3.189 4 H -0.175 1.175 5 H -0.164 1.164 6 H -0.187 1.187 7 C -0.442 4.442 8 H 0.096 0.904 9 C 0.127 3.873 10 N -0.191 5.191 11 C -0.006 4.006 12 C -0.295 4.295 13 C -0.060 4.060 14 Br 0.051 6.949 15 C -0.307 4.307 16 N 0.511 4.489 17 O -0.389 6.389 18 O -0.390 6.390 19 H 0.123 0.877 20 H 0.210 0.790 21 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.282 -3.575 0.026 5.578 hybrid contribution 1.202 -0.150 -0.001 1.212 sum -3.080 -3.724 0.025 4.833 Atomic orbital electron populations 1.69335 1.09452 1.32637 1.19003 1.28346 0.95876 1.03996 0.92079 0.85026 0.79114 0.74124 0.80675 1.17537 1.16439 1.18672 1.21472 0.94242 0.90383 1.38137 0.90373 1.18323 0.88972 0.89089 0.90899 1.68800 1.03869 1.28776 1.17617 1.23754 1.01819 0.86807 0.88210 1.21936 0.89653 1.01322 1.16586 1.21630 0.95877 0.88386 1.00074 1.96653 1.77641 1.23222 1.97423 1.20919 0.74107 0.97370 1.38344 1.50287 1.05571 0.92215 1.00835 1.96140 1.71709 1.54914 1.16107 1.96141 1.71528 1.55005 1.16299 0.87736 0.78993 0.81528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -30.71 11.60 23.18 0.27 -30.44 14 2 C 0.03 1.35 5.67 87.14 0.49 1.84 14 3 Si 0.99 33.66 29.64 68.60 2.03 35.69 14 4 H -0.25 -8.20 7.11 99.48 0.71 -7.49 14 5 H -0.24 -7.18 7.11 99.48 0.71 -6.47 14 6 H -0.26 -9.33 7.11 99.48 0.71 -8.63 14 7 C -0.42 -21.68 9.22 25.07 0.23 -21.45 14 8 H 0.08 4.20 7.29 -2.91 -0.02 4.18 14 9 C 0.25 12.90 6.56 40.16 0.26 13.16 14 10 N -0.48 -22.87 7.99 -188.91 -1.51 -24.38 14 11 C 0.17 6.50 11.19 85.13 0.95 7.45 14 12 C -0.27 -9.99 9.93 22.70 0.23 -9.76 14 13 C 0.03 1.21 6.27 22.48 0.14 1.35 14 14 Br -0.03 -1.29 33.23 -20.37 -0.68 -1.96 14 15 C -0.22 -11.06 6.33 37.09 0.23 -10.83 14 16 N 0.02 1.04 3.27 -44.77 -0.15 0.89 14 17 O -0.19 -9.63 19.97 3.51 0.07 -9.56 14 18 O -0.19 -9.73 19.97 3.51 0.07 -9.66 14 19 H 0.31 11.74 8.27 -92.70 -0.77 10.97 14 20 H 0.19 5.46 8.06 -2.92 -0.02 5.44 14 21 H 0.17 4.77 8.06 -2.91 -0.02 4.75 14 Total: -1.00 -58.85 233.82 3.94 -54.91 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.29 Total: 2.75 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 2.54 Total: -18.24 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -1.39 Total: -53.93 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.14 Total: -19.22 kcal Atomic # 14 Polarization: 33.66 SS G_CDS: 2.03 Total: 35.69 kcal Atomic # 35 Polarization: -1.29 SS G_CDS: -0.68 Total: -1.96 kcal Total: -58.85 3.94 -54.91 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306721057.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.879 kcal (2) G-P(sol) polarization free energy of solvation -58.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds