Wall clock time and date at job start Mon Mar 30 2020 06:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29573 * 1 3 3 Si 1.86800 * 119.99923 * 2 1 4 4 H 1.48505 * 109.47218 * 269.99980 * 3 2 1 5 5 H 1.48504 * 109.47195 * 30.00279 * 3 2 1 6 6 H 1.48498 * 109.46991 * 150.00178 * 3 2 1 7 7 C 1.46388 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99763 * 190.62637 * 7 2 1 9 9 C 1.41160 * 120.00479 * 10.62024 * 7 2 1 10 10 C 1.41233 * 121.06561 * 31.32632 * 9 7 2 11 11 C 1.38116 * 118.80321 * 179.97438 * 10 9 7 12 12 Br 1.89100 * 119.48663 * 179.97438 * 11 10 9 13 13 N 1.31898 * 121.02004 * 359.72174 * 11 10 9 14 14 C 1.31817 * 122.41659 * 0.57179 * 13 11 10 15 15 C 1.37994 * 121.05904 * 359.43084 * 14 13 11 16 16 N 1.48027 * 120.58023 * 180.25283 * 15 14 13 17 17 O 1.31703 * 119.99820 * 6.12071 * 16 15 14 18 18 O 1.31697 * 120.00030 * 186.11771 * 16 15 14 19 19 H 0.97002 * 120.00148 * 359.97438 * 1 2 3 20 20 H 1.07999 * 120.59604 * 359.97438 * 10 9 7 21 21 H 1.07999 * 119.46623 * 179.70378 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2957 0.0000 0.0000 3 14 2.2297 1.6177 0.0000 4 1 2.4772 2.0465 -1.4001 5 1 1.4272 2.6527 0.7001 6 1 3.5273 1.4402 0.7000 7 6 2.0277 -1.2678 -0.0006 8 1 3.0938 -1.2758 0.1719 9 6 1.3401 -2.4797 -0.2264 10 6 0.1982 -2.5261 -1.0562 11 6 -0.4383 -3.7372 -1.2453 12 35 -1.9694 -3.8214 -2.3518 13 7 0.0083 -4.8369 -0.6699 14 6 1.0659 -4.8433 0.1168 15 6 1.7722 -3.6851 0.3696 16 7 2.9618 -3.7055 1.2504 17 8 3.4261 -4.8517 1.7034 18 8 3.5558 -2.5776 1.5810 19 1 -0.4850 0.8401 0.0004 20 1 -0.1707 -1.6307 -1.5342 21 1 1.3874 -5.7708 0.5673 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306937121.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:54 Heat of formation + Delta-G solvation = 34.386899 kcal Electronic energy + Delta-G solvation = -13185.491374 eV Core-core repulsion = 10497.345960 eV Total energy + Delta-G solvation = -2688.145414 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 271.958 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.29393 -36.98381 -34.97726 -32.90895 -31.94537 -31.42044 -29.20302 -26.93343 -24.94199 -22.43768 -21.21942 -18.58541 -16.98049 -16.79507 -16.09914 -15.08342 -14.97518 -14.57986 -13.55381 -13.27553 -13.17560 -12.29608 -11.97591 -11.75855 -11.31540 -10.82082 -10.45946 -10.16442 -9.91958 -9.82341 -9.65136 -9.35618 -8.97050 -8.75960 -8.38919 -7.87751 -5.51461 0.62196 1.98423 2.08847 2.24105 2.60419 2.68545 2.74299 2.81962 3.31528 3.71779 4.57612 5.25523 5.69509 5.75771 5.97618 6.10955 6.44393 6.58925 6.92978 7.11751 7.47512 7.66234 7.73677 8.37538 8.56511 8.96548 Molecular weight = 271.96amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.009411 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.001869 B = 2974.576969 C = 4466.726019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.053 3.947 3 Si 0.941 3.059 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.241 1.241 7 C -0.307 4.307 8 H 0.137 0.863 9 C 0.091 3.909 10 C -0.126 4.126 11 C 0.110 3.890 12 Br -0.045 7.045 13 N -0.533 5.533 14 C 0.216 3.784 15 C -0.154 4.154 16 N 0.044 4.956 17 O -0.321 6.321 18 O -0.256 6.256 19 H 0.311 0.689 20 H 0.146 0.854 21 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.033 3.058 -5.516 8.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.180 4.180 3 Si 0.761 3.239 4 H -0.178 1.178 5 H -0.189 1.189 6 H -0.163 1.163 7 C -0.335 4.335 8 H 0.154 0.846 9 C 0.083 3.917 10 C -0.151 4.151 11 C -0.090 4.090 12 Br 0.039 6.961 13 N -0.252 5.252 14 C 0.045 3.955 15 C -0.259 4.259 16 N 0.474 4.526 17 O -0.473 6.473 18 O -0.424 6.424 19 H 0.124 0.876 20 H 0.164 0.836 21 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.612 2.314 -6.318 9.433 hybrid contribution 1.141 1.325 0.681 1.877 sum -5.470 3.639 -5.637 8.657 Atomic orbital electron populations 1.69075 1.09314 1.33389 1.20769 1.28096 0.95113 1.03719 0.91122 0.85691 0.81293 0.76259 0.80700 1.17830 1.18858 1.16327 1.22565 0.98257 0.88110 1.24543 0.84570 1.17342 0.91809 0.91385 0.91174 1.22274 0.96472 0.96638 0.99722 1.22270 0.95160 0.92016 0.99544 1.96558 1.35835 1.99121 1.64620 1.67290 1.15206 1.28698 1.14019 1.22020 0.87579 0.96049 0.89875 1.21182 0.96155 0.98767 1.09757 1.49680 1.01620 1.01435 0.99838 1.96116 1.72068 1.14718 1.64383 1.96071 1.61906 1.16739 1.67678 0.87622 0.83642 0.82345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -13.90 11.25 55.98 0.63 -13.27 14 2 C 0.05 1.03 5.43 -15.23 -0.08 0.95 14 3 Si 0.94 14.59 29.65 -169.99 -5.04 9.55 14 4 H -0.25 -3.79 7.11 56.52 0.40 -3.39 14 5 H -0.26 -3.92 7.11 56.52 0.40 -3.52 14 6 H -0.24 -3.90 7.11 56.52 0.40 -3.50 14 7 C -0.31 -6.93 8.12 -35.20 -0.29 -7.21 14 8 H 0.14 3.15 5.81 -52.49 -0.30 2.84 14 9 C 0.09 2.16 5.57 -106.51 -0.59 1.57 14 10 C -0.13 -2.77 8.55 -38.49 -0.33 -3.10 14 11 C 0.11 2.34 7.16 -17.57 -0.13 2.21 14 12 Br -0.05 -0.80 33.86 -68.01 -2.30 -3.10 14 13 N -0.53 -11.79 10.27 -11.77 -0.12 -11.91 14 14 C 0.22 4.83 10.73 -17.65 -0.19 4.64 14 15 C -0.15 -3.75 6.97 -78.89 -0.55 -4.30 14 16 N 0.04 1.15 4.99 34.47 0.17 1.32 14 17 O -0.32 -8.41 19.21 -31.57 -0.61 -9.01 14 18 O -0.26 -6.78 16.37 -31.57 -0.52 -7.29 14 19 H 0.31 5.23 8.27 -40.82 -0.34 4.89 14 20 H 0.15 3.06 6.59 -52.49 -0.35 2.72 14 21 H 0.16 3.23 7.60 -52.49 -0.40 2.83 14 LS Contribution 227.71 15.07 3.43 3.43 Total: -1.00 -25.96 227.71 -6.69 -32.65 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -0.18 Total: 2.87 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -2.16 Total: -5.23 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.68 Total: -23.87 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -1.12 Total: -16.31 kcal Atomic # 14 Polarization: 14.59 SS G_CDS: -5.04 Total: 9.55 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -2.30 Total: -3.10 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -25.96 -6.69 -32.65 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306937121.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.036 kcal (2) G-P(sol) polarization free energy of solvation -25.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds